ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58d10 |
|---|---|
| Clone Library Name | barley_pub |
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 102 bits (254), Expect = 4e-22 Identities = 51/108 (47%), Positives = 71/108 (65%) Frame = +1 Query: 94 LDAAIESLLNTEKQCRLAGDVAGTRKAAVDIVELCFKDGAWKALNDQIVVLSKRRGQLKQ 273 L IE+LL+ EKQ R A D+ T + V +V++C++ W LN+ I++LSKRR QLKQ Sbjct: 39 LQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQ 98 Query: 274 AITAVVQKAMEYIDVAPDVETRIELIXTLSSVAAGKIYVEIERARLIK 417 A+ +VQ+ Y++ D+ ++ LI TL V GKIYVEIERARL K Sbjct: 99 AVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 146
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 102 bits (254), Expect = 4e-22 Identities = 51/108 (47%), Positives = 71/108 (65%) Frame = +1 Query: 94 LDAAIESLLNTEKQCRLAGDVAGTRKAAVDIVELCFKDGAWKALNDQIVVLSKRRGQLKQ 273 L IE+LL+ EKQ R A D+ T + V +V++C++ W LN+ I++LSKRR QLKQ Sbjct: 39 LQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQ 98 Query: 274 AITAVVQKAMEYIDVAPDVETRIELIXTLSSVAAGKIYVEIERARLIK 417 A+ +VQ+ Y++ D+ ++ LI TL V GKIYVEIERARL K Sbjct: 99 AVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTK 146
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 100 bits (248), Expect = 2e-21 Identities = 50/108 (46%), Positives = 70/108 (64%) Frame = +1 Query: 94 LDAAIESLLNTEKQCRLAGDVAGTRKAAVDIVELCFKDGAWKALNDQIVVLSKRRGQLKQ 273 L IE+LL+ EKQ R A D+ T + V +V++C++ W N+ I++LSKRR QLKQ Sbjct: 39 LQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQ 98 Query: 274 AITAVVQKAMEYIDVAPDVETRIELIXTLSSVAAGKIYVEIERARLIK 417 A+ +VQ+ Y++ D+ ++ LI TL V GKIYVEIERARL K Sbjct: 99 AVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTK 146
>RPN5_SCHPO (Q9UTM3) 26S proteasome regulatory subunit rpn5| Length = 443 Score = 97.8 bits (242), Expect = 9e-21 Identities = 50/106 (47%), Positives = 72/106 (67%) Frame = +1 Query: 94 LDAAIESLLNTEKQCRLAGDVAGTRKAAVDIVELCFKDGAWKALNDQIVVLSKRRGQLKQ 273 +DA +E LL EKQ R A D + K + I +L F+ G ++ LN+Q+V L K+ GQLKQ Sbjct: 28 IDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQ 87 Query: 274 AITAVVQKAMEYIDVAPDVETRIELIXTLSSVAAGKIYVEIERARL 411 ++T++VQ M Y+ D++T+I LI TL ++ GKIYVE+ERARL Sbjct: 88 SMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARL 133
>RPN5_YEAST (Q12250) 26S proteasome regulatory subunit RPN5 (Proteasome| non-ATPase subunit 5) Length = 445 Score = 86.3 bits (212), Expect = 3e-17 Identities = 45/109 (41%), Positives = 70/109 (64%), Gaps = 2/109 (1%) Frame = +1 Query: 97 DAAIESLLNTEKQCRLAGDVAGTRKAAVDIVELCFKDGAWKALNDQIVVLSKRRGQLKQA 276 ++A++ LL EK+ R A D+A +++ IV+L W LN+Q+ +LSK+ GQLK + Sbjct: 33 NSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS 92 Query: 277 ITAVVQKAMEYIDVAP--DVETRIELIXTLSSVAAGKIYVEIERARLIK 417 I ++QK MEY+ + D+ TRI +I T+ V KI+VE+ERAR+ K Sbjct: 93 IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTK 141
>TLE1_BRARE (O13168) Groucho 1 protein (Fragment)| Length = 535 Score = 30.8 bits (68), Expect = 1.3 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = -3 Query: 239 TIWSLRAFQAPSLKQSSTMSTAAFLVPATSPARRHCFSVLRSDSIA 102 TIW L A Q P +K T S A A SP + CFS +IA Sbjct: 320 TIWDL-ASQTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIA 364
>TLE2_BRARE (O13166) Groucho 2 protein| Length = 761 Score = 30.8 bits (68), Expect = 1.3 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = -3 Query: 239 TIWSLRAFQAPSLKQSSTMSTAAFLVPATSPARRHCFSVLRSDSIA 102 TIW L A Q P +K T S A A SP + CFS +IA Sbjct: 546 TIWDL-ASQTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIA 590
>YQIK_ECOLI (P77306) Inner membrane protein yqiK| Length = 553 Score = 30.0 bits (66), Expect = 2.3 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 11/56 (19%) Frame = +1 Query: 172 AAVDIVELCFKDG-----AWKALNDQIVVLSKRRGQLK------QAITAVVQKAME 306 A V++ E K G A +ALND I VLS + LK QA+ AV++K++E Sbjct: 413 AIVELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPAVIEKSVE 468
>GLTL1_MOUSE (Q9JJ61) Putative polypeptide| N-acetylgalactosaminyltransferase-like protein 1 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase-like protein 1) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 1) (Polypeptide G Length = 558 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 179 TAAFLVPATSPARRHCFSVLRSDSIAASRPL 87 +A L P P R+H F+ L SD +++ RP+ Sbjct: 75 SAKQLKPGEDPYRQHAFNQLESDKLSSDRPI 105
>YIAV_ECOLI (P37683) Inner membrane protein yiaV precursor| Length = 378 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -2 Query: 279 NCLLELASPLGEDDDLVVESLPGAVLEAELDDVDGGLPGAGHIS 148 N LL LA G+D ++V +LPG V +L + +PG + S Sbjct: 267 NSLLRLAP--GDDAEVVFNALPGKVFSGKLAAISPAVPGGAYQS 308
>EFG_PELUB (Q4FLL6) Elongation factor G (EF-G)| Length = 692 Score = 29.3 bits (64), Expect = 3.8 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%) Frame = +1 Query: 67 IPTMEGSS----GLDAAIESLLNTEKQCRLAGDVAGTRKAAVDIVELCFKDG------AW 216 +P GS+ G+ +++++N G + GT+ + D+VE+ F DG A+ Sbjct: 255 VPITTGSAFKNKGVQPLLDAVINYLPSPIDIGSINGTKPGSEDVVEMKFDDGTGFSALAF 314 Query: 217 KALNDQIV 240 K ND V Sbjct: 315 KVANDPFV 322
>GPR97_MOUSE (Q8R0T6) Probable G-protein coupled receptor 97 precursor| Length = 542 Score = 29.3 bits (64), Expect = 3.8 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 19/88 (21%) Frame = -2 Query: 381 FSSSDTAQCXDKLNTCLHVWCHVDVLHRFLHHSSNCLLE-----------------LASP 253 F +DTAQC K H C V L R+ + + LLE +++ Sbjct: 41 FDLNDTAQCFTKCGQSEHSPCDVGNLQRYWLNYESYLLENSMETVDMPFVKALIQNISTD 100 Query: 252 LGED--DDLVVESLPGAVLEAELDDVDG 175 + ED L++ +P V++ E + DG Sbjct: 101 VSEDLLYSLMLSQIPRQVMQGEDEPADG 128
>MGAT2_HUMAN (Q10469) Alpha-1,6-mannosyl-glycoprotein| 2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.143) (Mannoside acetylglucosaminyltransferase 2) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II) (Beta-1,2-N-acetylglucosam Length = 447 Score = 28.9 bits (63), Expect = 5.0 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +1 Query: 100 AAIESLLNTEKQCRLAGDVAGTRKAAVDIVELCFKDGAWKALNDQIVVLSKRRGQ 264 A IESLLN KQ + + K V + K+G W + D + S RR Q Sbjct: 393 AQIESLLNNNKQYMFPETLTISEKFTVVAISPPRKNGGWGDIRDHELCKSYRRLQ 447
>UBD_HUMAN (O15205) Ubiquitin D (Ubiquitin-like protein FAT10) (Diubiquitin)| Length = 165 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 170 FLVPATSPARRHCFSVLRSDSIAASRPLLPSMVGI 66 FLV + A+RH V RS S+A + ++ + GI Sbjct: 91 FLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGI 125
>GLMS_LEGPL (Q5WSX8) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 603 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Frame = +1 Query: 259 GQLKQAITAVVQKAMEYIDVAPDVETRIELIXTLSSVAA--GKIYVEIE--------RAR 408 G+LK A+V K M I VAP+ E +L L V+A G+++V ++ AR Sbjct: 496 GELKHGPLALVDKDMPVIAVAPNDELLDKLKSNLHEVSARGGQLFVFVDDSQNWKANGAR 555 Query: 409 LIK 417 LIK Sbjct: 556 LIK 558
>GLMS_LEGPH (Q5ZRP4) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 603 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Frame = +1 Query: 259 GQLKQAITAVVQKAMEYIDVAPDVETRIELIXTLSSVAA--GKIYVEIE--------RAR 408 G+LK A+V K M I VAP+ E +L L V+A G+++V ++ AR Sbjct: 496 GELKHGPLALVDKDMPVIAVAPNDELLDKLKSNLHEVSARGGQLFVFVDDSQNWKANGAR 555 Query: 409 LIK 417 LIK Sbjct: 556 LIK 558
>GLMS_LEGPA (Q5X153) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 603 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Frame = +1 Query: 259 GQLKQAITAVVQKAMEYIDVAPDVETRIELIXTLSSVAA--GKIYVEIE--------RAR 408 G+LK A+V K M I VAP+ E +L L V+A G+++V ++ AR Sbjct: 496 GELKHGPLALVDKDMPVIAVAPNDELLDKLKSNLHEVSARGGQLFVFVDDSQNWKANGAR 555 Query: 409 LIK 417 LIK Sbjct: 556 LIK 558
>CLPX_CLOAB (Q97FT7) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 432 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +1 Query: 178 VDIVELCFKDGAWKALNDQIVVLSKRRGQLKQAITAVVQKAMEYIDVAPDVETRIELIXT 357 +D VEL FKDGA KA+ + + S L+ + +++ M I DV+ I T Sbjct: 338 MDNVELEFKDGALKAIASEAISRSTGARGLRAIVEDIMKDIMFDIPSREDVKKVIVTENT 397 Query: 358 LSS 366 +++ Sbjct: 398 INT 400 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,491,101 Number of Sequences: 219361 Number of extensions: 737138 Number of successful extensions: 2731 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2730 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
