>BAB2_DROME (Q9W0K4) Protein bric-a-brac 2|
          Length = 1067

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 252 AAVHLPPG--FSMSSMAPHVPSMLAPPAYTLFHHAAXYGA 365
           AA+H PPG     S++ PH+ +++ PP   + HHA    A
Sbjct: 464 AAMHSPPGGVAVQSALPPHMAAIVPPPPSAMHHHAQQLAA 503

>ACOB_BACSU (O34591) Acetoin:2,6-dichlorophenolindophenol oxidoreductase beta|
           subunit (EC 1.1.1.-) (Acetoin:DCPIP oxidoreductase-beta)
           (AO:DCPIP OR) (TPP-dependent acetoin dehydrogenase E1
           beta-subunit)
          Length = 341

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = +3

Query: 156 LDDDVFFAELSKRISLLITDDDEADFGSAQFPAAVHLPPGFSMSS------MAPHVPSML 317
           LD+D  F  L K   L+I D+       A   AA+    GF +         APH P   
Sbjct: 253 LDEDAIFTSLEKTNRLIIIDEANPRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPF 312

Query: 318 AP 323
           +P
Sbjct: 313 SP 314

>RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, beta and beta'|
            chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase
            beta chain (Transcriptase beta chain) (RNA polymerase
            beta subunit); DNA-directed RNA polymerase beta' chain
            (Transcri
          Length = 2894

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 266  EVDGGGELRGA--EVGLVVVGDEERNPLAELREEDVVVQ 156
            E DG  E+     EV + +VGD++R+    LR++DV  Q
Sbjct: 2358 EFDGELEVENVHDEVHITIVGDKKRSETYRLRKDDVAKQ 2396

>AFTIN_MOUSE (Q80WT5) Aftiphilin|
          Length = 931

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 301 WGAIDDMEKPGGRWTAAGNCAEPKSASSSSVMRSE 197
           W A +D +K G  W A G+  E +S     V +S+
Sbjct: 568 WNAFEDEQKDGCSWAAFGDQQETESHHLKEVWQSQ 602

>ONEC_DROME (Q9NJB5) Homeobox protein onecut|
          Length = 1081

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 270 PGFSMSSMAPHVPSMLAPPAYTLFHHAAXYGAXNSAGDAG 389
           PGFS +S A   P    PP  T+    A Y    S GD+G
Sbjct: 329 PGFSQTSYATLTPIQPLPPISTMSEKFA-YSGHISGGDSG 367

>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)|
            (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1)
          Length = 2688

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 183  LSKRISLLITDDDEADFGSAQFPAAVHLPPGFSMSSMAPHVPSMLAP--PAYTLFHHA 350
            L ++ISL I  D     GSA     + LP   ++   AP +P M +   PA+T+   A
Sbjct: 1415 LIRQISLNIASDSHLSPGSAAALQTIVLPSVNTVPFQAPRLPDMASADCPAHTVHPQA 1472

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2014

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +3

Query: 267 PPGFSMSSMAPHVPSM----LAPPAYTLFHHAA 353
           PPG SM S+AP + S+    L PP   + H  A
Sbjct: 856 PPGTSMESLAPSIDSLHGCPLLPPQVCIGHRDA 888

>PTPA1_CRYNE (Q5K9U4) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 362

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = +3

Query: 231 FGSAQFPAAVHLPPGFSMSSMAPHVPSMLAPPA------YTL-FHHAAXY 359
           FGSAQ   + +L P  S+S    H PS  +PP+      YTL  HH   +
Sbjct: 231 FGSAQLLGS-NLTPSASLSLALSHHPSATSPPSAPITDLYTLSLHHLTLF 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,005,476
Number of Sequences: 219361
Number of extensions: 484462
Number of successful extensions: 2137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)