ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58d05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Minus Query: 109 ccacgatgacggcgtcgccgttcccgacggtggagaagtgcgcgtcggtgggccggagcg 168 ||||||||| ||||||||||||||| ||||||||||||| |||| || ||| ||| Sbjct: 29861385 ccacgatgatcgcgtcgccgttcccggcggtggagaagtgttcgtccaaggaccgcggcg 29861326 Query: 169 gggacacggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccct 228 | |||||| | || |||||||| |||||||||||||||||||| |||||||||||||| | Sbjct: 29861325 gcgacacgatcgtcgccgacctcgacggcacgctgctgtgcggccggagctcgttcccgt 29861266 Query: 229 acttcgcgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgc 288 ||||||||||||||||||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct: 29861265 acttcgcgcacatggcgttcgagacggggggcgtcctccggctgctggcgctgatcctgc 29861206 Query: 289 tggcgccgctcgcggggctgctctactacgtcgtgtccgagtcggcggggatccaggtgc 348 ||||||||||||| || ||||||||||| | |||||||||||||| || |||||||||| Sbjct: 29861205 tggcgccgctcgccggcgtgctctactacctggtgtccgagtcggccggcatccaggtgc 29861146 Query: 349 tcatcttcgcgtccatggccggcgccaaggtggacgacgtcgaggccgtggcgcgcgccg 408 ||||||||||||||||||||||||| | ||| | |||||| ||||| ||||||||||||| Sbjct: 29861145 tcatcttcgcgtccatggccggcgcgagggtcgccgacgttgaggcggtggcgcgcgccg 29861086 Query: 409 tgctgccccagttctactgctccgacctccacccggagtcgtggcgcgtcttctcggcct 468 |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | Sbjct: 29861085 tgctgcccaagttctactgctccgacatccacccggagtcgtggcgcgtgttctcggcgt 29861026 Query: 469 gcggccgccggtgcg 483 |||| |||||||||| Sbjct: 29861025 gcgggcgccggtgcg 29861011 Score = 44.1 bits (22), Expect = 0.42 Identities = 64/78 (82%) Strand = Plus / Minus Query: 184 ccgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcgcgcacatgg 243 ||||||| |||||||||||||| || |||||| ||||||| |||| ||||| | | | Sbjct: 3584297 ccgacctcgacggcacgctgctccgctcccggagcgcgttcccgtactacgcgctcgtcg 3584238 Query: 244 cgttcgagaccggcggcg 261 | |||||| ||||||||| Sbjct: 3584237 ccttcgaggccggcggcg 3584220 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ggagacggagacagaccaag 42 |||||||||||||||||||| Sbjct: 29169557 ggagacggagacagaccaag 29169538 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 acgctgctgtgcgggcggag 217 |||||||||||||||||||| Sbjct: 2413502 acgctgctgtgcgggcggag 2413521
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Plus Query: 109 ccacgatgacggcgtcgccgttcccgacggtggagaagtgcgcgtcggtgggccggagcg 168 ||||||||| ||||||||||||||| ||||||||||||| |||| || ||| ||| Sbjct: 149220 ccacgatgatcgcgtcgccgttcccggcggtggagaagtgttcgtccaaggaccgcggcg 149279 Query: 169 gggacacggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccct 228 | |||||| | || |||||||| |||||||||||||||||||| |||||||||||||| | Sbjct: 149280 gcgacacgatcgtcgccgacctcgacggcacgctgctgtgcggccggagctcgttcccgt 149339 Query: 229 acttcgcgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgc 288 ||||||||||||||||||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct: 149340 acttcgcgcacatggcgttcgagacggggggcgtcctccggctgctggcgctgatcctgc 149399 Query: 289 tggcgccgctcgcggggctgctctactacgtcgtgtccgagtcggcggggatccaggtgc 348 ||||||||||||| || ||||||||||| | |||||||||||||| || |||||||||| Sbjct: 149400 tggcgccgctcgccggcgtgctctactacctggtgtccgagtcggccggcatccaggtgc 149459 Query: 349 tcatcttcgcgtccatggccggcgccaaggtggacgacgtcgaggccgtggcgcgcgccg 408 ||||||||||||||||||||||||| | ||| | |||||| ||||| ||||||||||||| Sbjct: 149460 tcatcttcgcgtccatggccggcgcgagggtcgccgacgttgaggcggtggcgcgcgccg 149519 Query: 409 tgctgccccagttctactgctccgacctccacccggagtcgtggcgcgtcttctcggcct 468 |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | Sbjct: 149520 tgctgcccaagttctactgctccgacatccacccggagtcgtggcgcgtgttctcggcgt 149579 Query: 469 gcggccgccggtgcg 483 |||| |||||||||| Sbjct: 149580 gcgggcgccggtgcg 149594
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Minus Query: 109 ccacgatgacggcgtcgccgttcccgacggtggagaagtgcgcgtcggtgggccggagcg 168 ||||||||| ||||||||||||||| ||||||||||||| |||| || ||| ||| Sbjct: 27326 ccacgatgatcgcgtcgccgttcccggcggtggagaagtgttcgtccaaggaccgcggcg 27267 Query: 169 gggacacggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccct 228 | |||||| | || |||||||| |||||||||||||||||||| |||||||||||||| | Sbjct: 27266 gcgacacgatcgtcgccgacctcgacggcacgctgctgtgcggccggagctcgttcccgt 27207 Query: 229 acttcgcgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgc 288 ||||||||||||||||||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct: 27206 acttcgcgcacatggcgttcgagacggggggcgtcctccggctgctggcgctgatcctgc 27147 Query: 289 tggcgccgctcgcggggctgctctactacgtcgtgtccgagtcggcggggatccaggtgc 348 ||||||||||||| || ||||||||||| | |||||||||||||| || |||||||||| Sbjct: 27146 tggcgccgctcgccggcgtgctctactacctggtgtccgagtcggccggcatccaggtgc 27087 Query: 349 tcatcttcgcgtccatggccggcgccaaggtggacgacgtcgaggccgtggcgcgcgccg 408 ||||||||||||||||||||||||| | ||| | |||||| ||||| ||||||||||||| Sbjct: 27086 tcatcttcgcgtccatggccggcgcgagggtcgccgacgttgaggcggtggcgcgcgccg 27027 Query: 409 tgctgccccagttctactgctccgacctccacccggagtcgtggcgcgtcttctcggcct 468 |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | Sbjct: 27026 tgctgcccaagttctactgctccgacatccacccggagtcgtggcgcgtgttctcggcgt 26967 Query: 469 gcggccgccggtgcg 483 |||| |||||||||| Sbjct: 26966 gcgggcgccggtgcg 26952
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Minus Query: 109 ccacgatgacggcgtcgccgttcccgacggtggagaagtgcgcgtcggtgggccggagcg 168 ||||||||| ||||||||||||||| ||||||||||||| |||| || ||| ||| Sbjct: 29952807 ccacgatgatcgcgtcgccgttcccggcggtggagaagtgttcgtccaaggaccgcggcg 29952748 Query: 169 gggacacggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccct 228 | |||||| | || |||||||| |||||||||||||||||||| |||||||||||||| | Sbjct: 29952747 gcgacacgatcgtcgccgacctcgacggcacgctgctgtgcggccggagctcgttcccgt 29952688 Query: 229 acttcgcgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgc 288 ||||||||||||||||||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct: 29952687 acttcgcgcacatggcgttcgagacggggggcgtcctccggctgctggcgctgatcctgc 29952628 Query: 289 tggcgccgctcgcggggctgctctactacgtcgtgtccgagtcggcggggatccaggtgc 348 ||||||||||||| || ||||||||||| | |||||||||||||| || |||||||||| Sbjct: 29952627 tggcgccgctcgccggcgtgctctactacctggtgtccgagtcggccggcatccaggtgc 29952568 Query: 349 tcatcttcgcgtccatggccggcgccaaggtggacgacgtcgaggccgtggcgcgcgccg 408 ||||||||||||||||||||||||| | ||| | |||||| ||||| ||||||||||||| Sbjct: 29952567 tcatcttcgcgtccatggccggcgcgagggtcgccgacgttgaggcggtggcgcgcgccg 29952508 Query: 409 tgctgccccagttctactgctccgacctccacccggagtcgtggcgcgtcttctcggcct 468 |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | Sbjct: 29952507 tgctgcccaagttctactgctccgacatccacccggagtcgtggcgcgtgttctcggcgt 29952448 Query: 469 gcggccgccggtgcg 483 |||| |||||||||| Sbjct: 29952447 gcgggcgccggtgcg 29952433 Score = 44.1 bits (22), Expect = 0.42 Identities = 64/78 (82%) Strand = Plus / Minus Query: 184 ccgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcgcgcacatgg 243 ||||||| |||||||||||||| || |||||| ||||||| |||| ||||| | | | Sbjct: 3584408 ccgacctcgacggcacgctgctccgctcccggagcgcgttcccgtactacgcgctcgtcg 3584349 Query: 244 cgttcgagaccggcggcg 261 | |||||| ||||||||| Sbjct: 3584348 ccttcgaggccggcggcg 3584331 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ggagacggagacagaccaag 42 |||||||||||||||||||| Sbjct: 29260979 ggagacggagacagaccaag 29260960 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 acgctgctgtgcgggcggag 217 |||||||||||||||||||| Sbjct: 2413612 acgctgctgtgcgggcggag 2413631
>ref|XM_469626.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1404 Score = 293 bits (148), Expect = 3e-76 Identities = 220/244 (90%) Strand = Plus / Plus Query: 240 atggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgctggcgccgctc 299 |||||||||||||| || ||||| ||||||||| ||||||| ||||||||||||||||| Sbjct: 1 atggcgttcgagacggggggcgtcctccggctgctggcgctgatcctgctggcgccgctc 60 Query: 300 gcggggctgctctactacgtcgtgtccgagtcggcggggatccaggtgctcatcttcgcg 359 || || ||||||||||| | |||||||||||||| || ||||||||||||||||||||| Sbjct: 61 gccggcgtgctctactacctggtgtccgagtcggccggcatccaggtgctcatcttcgcg 120 Query: 360 tccatggccggcgccaaggtggacgacgtcgaggccgtggcgcgcgccgtgctgccccag 419 |||||||||||||| | ||| | |||||| ||||| ||||||||||||||||||||| || Sbjct: 121 tccatggccggcgcgagggtcgccgacgttgaggcggtggcgcgcgccgtgctgcccaag 180 Query: 420 ttctactgctccgacctccacccggagtcgtggcgcgtcttctcggcctgcggccgccgg 479 ||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 181 ttctactgctccgacatccacccggagtcgtggcgcgtgttctcggcgtgcgggcgccgg 240 Query: 480 tgcg 483 |||| Sbjct: 241 tgcg 244
>ref|XM_463861.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1521 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 383 cgacgtcgaggccgtggcgcgcgccgtgctgcc 415 ||||||||||||||||||||||||||||||||| Sbjct: 291 cgacgtcgaggccgtggcgcgcgccgtgctgcc 323
>ref|NM_196477.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045B21.10), mRNA Length = 1593 Score = 65.9 bits (33), Expect = 1e-07 Identities = 105/129 (81%) Strand = Plus / Plus Query: 175 cggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcg 234 |||||| |||||||||||| || |||||||| | ||||||| ||||||| |||| || Sbjct: 101 cggtggcggccgacctggaggggacgctgctccggtcgcggagcgcgttcccgtactacg 160 Query: 235 cgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgctggcgc 294 ||| | ||||||||||| |||||||||| |||||| || |||||| |||||||| | Sbjct: 161 cgctcgtggcgttcgagtgtggcggcgtgccgcggctggcgctgctgctgctgctggccc 220 Query: 295 cgctcgcgg 303 |||| |||| Sbjct: 221 cgctggcgg 229 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 tcgaggccgtggcgcgcgccgtgctgcc 415 ||||| ||| |||||||||||||||||| Sbjct: 314 tcgagtccgcggcgcgcgccgtgctgcc 341
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 65.9 bits (33), Expect = 1e-07 Identities = 105/129 (81%) Strand = Plus / Plus Query: 175 cggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcg 234 |||||| |||||||||||| || |||||||| | ||||||| ||||||| |||| || Sbjct: 77640 cggtggcggccgacctggaggggacgctgctccggtcgcggagcgcgttcccgtactacg 77699 Query: 235 cgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgctggcgc 294 ||| | ||||||||||| |||||||||| |||||| || |||||| |||||||| | Sbjct: 77700 cgctcgtggcgttcgagtgtggcggcgtgccgcggctggcgctgctgctgctgctggccc 77759 Query: 295 cgctcgcgg 303 |||| |||| Sbjct: 77760 cgctggcgg 77768 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 tcgaggccgtggcgcgcgccgtgctgcc 415 ||||| ||| |||||||||||||||||| Sbjct: 77853 tcgagtccgcggcgcgcgccgtgctgcc 77880
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 65.9 bits (33), Expect = 1e-07 Identities = 105/129 (81%) Strand = Plus / Plus Query: 175 cggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcg 234 |||||| |||||||||||| || |||||||| | ||||||| ||||||| |||| || Sbjct: 13909014 cggtggcggccgacctggaggggacgctgctccggtcgcggagcgcgttcccgtactacg 13909073 Query: 235 cgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgctggcgc 294 ||| | ||||||||||| |||||||||| |||||| || |||||| |||||||| | Sbjct: 13909074 cgctcgtggcgttcgagtgtggcggcgtgccgcggctggcgctgctgctgctgctggccc 13909133 Query: 295 cgctcgcgg 303 |||| |||| Sbjct: 13909134 cgctggcgg 13909142 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 tcgaggccgtggcgcgcgccgtgctgcc 415 ||||| ||| |||||||||||||||||| Sbjct: 13909227 tcgagtccgcggcgcgcgccgtgctgcc 13909254
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 383 cgacgtcgaggccgtggcgcgcgccgtgctgcc 415 ||||||||||||||||||||||||||||||||| Sbjct: 777978 cgacgtcgaggccgtggcgcgcgccgtgctgcc 777946 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 6473844 gccgtggcgcgcgccgtgct 6473825
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 383 cgacgtcgaggccgtggcgcgcgccgtgctgcc 415 ||||||||||||||||||||||||||||||||| Sbjct: 56109 cgacgtcgaggccgtggcgcgcgccgtgctgcc 56077
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 383 cgacgtcgaggccgtggcgcgcgccgtgctgcc 415 ||||||||||||||||||||||||||||||||| Sbjct: 134873 cgacgtcgaggccgtggcgcgcgccgtgctgcc 134841
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 65.9 bits (33), Expect = 1e-07 Identities = 105/129 (81%) Strand = Plus / Plus Query: 175 cggtggtggccgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcg 234 |||||| |||||||||||| || |||||||| | ||||||| ||||||| |||| || Sbjct: 13916356 cggtggcggccgacctggaggggacgctgctccggtcgcggagcgcgttcccgtactacg 13916415 Query: 235 cgcacatggcgttcgagaccggcggcgtgctccggctgacggcgctgctcctgctggcgc 294 ||| | ||||||||||| |||||||||| |||||| || |||||| |||||||| | Sbjct: 13916416 cgctcgtggcgttcgagtgtggcggcgtgccgcggctggcgctgctgctgctgctggccc 13916475 Query: 295 cgctcgcgg 303 |||| |||| Sbjct: 13916476 cgctggcgg 13916484 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 tcgaggccgtggcgcgcgccgtgctgcc 415 ||||| ||| |||||||||||||||||| Sbjct: 13916569 tcgagtccgcggcgcgcgccgtgctgcc 13916596
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 63.9 bits (32), Expect = 5e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 125 gccgttcccgacggtggagaagtgcgcgtcggtgggccggagcggggacacggtggtggc 184 |||||||||||||||||| ||||||| || |||||| ||| | || | |||||||| Sbjct: 33155 gccgttcccgacggtggacaagtgcgacgcgtcgggccgcggcgcgcacgccgtggtggc 33096 Query: 185 cgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcgcgcacatggc 244 |||||||||||| |||||||| || || ||| ||||||| |||| ||||| |||| Sbjct: 33095 ggacctggacggcgcgctgctgcgctcccgcagcgcgttcccgtactacgcgctggtggc 33036 Query: 245 gttcgagaccggcggcgtgc 264 |||||| |||||||||||| Sbjct: 33035 cttcgaggccggcggcgtgc 33016 Score = 44.1 bits (22), Expect = 0.42 Identities = 61/74 (82%) Strand = Plus / Minus Query: 398 ggcgcgcgccgtgctgccccagttctactgctccgacctccacccggagtcgtggcgcgt 457 ||||||||||||||| || | |||||| | ||||| | ||||||| |||||||||| Sbjct: 32882 ggcgcgcgccgtgctcccgcgcttctacgccgccgacgtgcacccggccgcgtggcgcgt 32823 Query: 458 cttctcggcctgcg 471 ||||||||||||| Sbjct: 32822 gttctcggcctgcg 32809
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 63.9 bits (32), Expect = 5e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 125 gccgttcccgacggtggagaagtgcgcgtcggtgggccggagcggggacacggtggtggc 184 |||||||||||||||||| ||||||| || |||||| ||| | || | |||||||| Sbjct: 35758 gccgttcccgacggtggacaagtgcgacgcgtcgggccgcggcgcgcacgccgtggtggc 35699 Query: 185 cgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcgcgcacatggc 244 |||||||||||| |||||||| || || ||| ||||||| |||| ||||| |||| Sbjct: 35698 ggacctggacggcgcgctgctgcgctcccgcagcgcgttcccgtactacgcgctggtggc 35639 Query: 245 gttcgagaccggcggcgtgc 264 |||||| |||||||||||| Sbjct: 35638 cttcgaggccggcggcgtgc 35619
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 390 gaggccgtggcgcgcgccgtgctgccccagttc 422 ||||||||||||||||||||||||||| ||||| Sbjct: 38489 gaggccgtggcgcgcgccgtgctgcccaagttc 38521
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 390 gaggccgtggcgcgcgccgtgctgccccagttc 422 ||||||||||||||||||||||||||| ||||| Sbjct: 22336854 gaggccgtggcgcgcgccgtgctgcccaagttc 22336886
>gb|AY105347.1| Zea mays PCO089398 mRNA sequence Length = 2225 Score = 48.1 bits (24), Expect = 0.027 Identities = 30/32 (93%) Strand = Plus / Plus Query: 174 acggtggtggccgacctggacggcacgctgct 205 ||||||| ||||||||||||||||||||||| Sbjct: 413 acggtggccgccgacctggacggcacgctgct 444
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 384 gacgtcgaggccgtggcgcgcgc 406 ||||||||||||||||||||||| Sbjct: 618887 gacgtcgaggccgtggcgcgcgc 618909
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 281 gctcctgctggcgccgctcgcgg 303 ||||||||||||||||||||||| Sbjct: 3824817 gctcctgctggcgccgctcgcgg 3824795 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 176 ggtggtggccgacctggacggc 197 |||||||||||||||||||||| Sbjct: 518646 ggtggtggccgacctggacggc 518625 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 gcgatggcgggcgcgggcgcg 107 ||||||||||||||||||||| Sbjct: 3705367 gcgatggcgggcgcgggcgcg 3705347 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 ggttgggagcgatggcgggcgcgg 102 |||| ||||||||||||||||||| Sbjct: 2468221 ggttcggagcgatggcgggcgcgg 2468244 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 ggcgttcgagaccggcggcgtgct 265 |||| ||||||||||||||||||| Sbjct: 1080471 ggcgctcgagaccggcggcgtgct 1080494
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 184 ccgacctggacggcacgctgctg 206 ||||||||||||||||||||||| Sbjct: 1010902 ccgacctggacggcacgctgctg 1010924
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 185 cgacctggacggcacgctgctg 206 |||||||||||||||||||||| Sbjct: 2205954 cgacctggacggcacgctgctg 2205975
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 184 ccgacctggacggcacgctgct 205 |||||||||||||||||||||| Sbjct: 173319 ccgacctggacggcacgctgct 173340
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 273 acggcgctgctcctgctggcgccgct 298 ||||||||| |||||||||||||||| Sbjct: 4469377 acggcgctgttcctgctggcgccgct 4469402 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 cgttcgagaccggcggcgtgc 264 ||||||||||||||||||||| Sbjct: 1164929 cgttcgagaccggcggcgtgc 1164949
>gb|AE012132.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 40 of 460 of the complete genome Length = 10029 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgacctggacggcacgctgctg 206 |||||||||||||||||||||| Sbjct: 6804 cgacctggacggcacgctgctg 6783
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 185 cgacctggacggcacgctgctg 206 |||||||||||||||||||||| Sbjct: 434937 cgacctggacggcacgctgctg 434916
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 44.1 bits (22), Expect = 0.42 Identities = 64/78 (82%) Strand = Plus / Minus Query: 184 ccgacctggacggcacgctgctgtgcgggcggagctcgttcccctacttcgcgcacatgg 243 ||||||| |||||||||||||| || |||||| ||||||| |||| ||||| | | | Sbjct: 101950 ccgacctcgacggcacgctgctccgctcccggagcgcgttcccgtactacgcgctcgtcg 101891 Query: 244 cgttcgagaccggcggcg 261 | |||||| ||||||||| Sbjct: 101890 ccttcgaggccggcggcg 101873
>gb|AY105490.1| Zea mays PCO147287 mRNA sequence Length = 727 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 389 cgaggccgtggcgcgcgccgtg 410 |||||||||||||||||||||| Sbjct: 205 cgaggccgtggcgcgcgccgtg 226
>ref|XM_867839.1| PREDICTED: Bos taurus hypothetical protein LOC615908 (LOC615908), mRNA Length = 1092 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 cggcgctgctcctgctggcgc 294 ||||||||||||||||||||| Sbjct: 578 cggcgctgctcctgctggcgc 598
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 231 ttcgcgcacatggcgttcgagaccg 255 |||||||||| |||||||||||||| Sbjct: 51935 ttcgcgcacaaggcgttcgagaccg 51911
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 231 ttcgcgcacatggcgttcgagaccg 255 |||||||||| |||||||||||||| Sbjct: 334692 ttcgcgcacaaggcgttcgagaccg 334668
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 231 ttcgcgcacatggcgttcgagaccg 255 |||||||||| |||||||||||||| Sbjct: 143999 ttcgcgcacaaggcgttcgagaccg 144023
>gb|DQ397560.1| Cenarchaeum symbiosum clone C01A04, complete sequence Length = 40230 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 tccgagtcggcggggatccaggtgc 348 |||||||||||||||||| |||||| Sbjct: 35458 tccgagtcggcggggatcgaggtgc 35482
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 cgttcgagaccggcggcgtgc 264 ||||||||||||||||||||| Sbjct: 1563074 cgttcgagaccggcggcgtgc 1563094
>gb|AE004917.1| Pseudomonas aeruginosa PAO1, section 478 of 529 of the complete genome Length = 11225 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 371 cgccaaggtggacgacgtcgaggcc 395 ||||||||||| ||||||||||||| Sbjct: 7999 cgccaaggtggtcgacgtcgaggcc 7975
>gb|U12892.1|PAU12892 Pseudomonas aeruginosa PAO1 fimbrial assembly (pilM), (pilN), (pilO) and (pilP) genes, complete cds Length = 2888 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 371 cgccaaggtggacgacgtcgaggcc 395 ||||||||||| ||||||||||||| Sbjct: 578 cgccaaggtggtcgacgtcgaggcc 602
>ref|XM_512297.1| PREDICTED: Pan troglodytes scaffold attachment factor B2 (LOC455618), mRNA Length = 2850 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gctgctcctgctggcgccgc 297 |||||||||||||||||||| Sbjct: 2278 gctgctcctgctggcgccgc 2259
>ref|NM_014649.1| Homo sapiens scaffold attachment factor B2 (SAFB2), mRNA Length = 3233 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gctgctcctgctggcgccgc 297 |||||||||||||||||||| Sbjct: 2191 gctgctcctgctggcgccgc 2172
>ref|XM_473711.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1266 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 988 gccgtggcgcgcgccgtgct 1007
>gb|AF167066.1| Crematogaster smithi microsatellites C20-1 and C20-2 sequence Length = 244 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 gcgcgaccacgatgacggcg 122 |||||||||||||||||||| Sbjct: 41 gcgcgaccacgatgacggcg 22
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ggagacggagacagaccaag 42 |||||||||||||||||||| Sbjct: 1418 ggagacggagacagaccaag 1399
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tcgagaccggcggcgtgctc 266 |||||||||||||||||||| Sbjct: 1166417 tcgagaccggcggcgtgctc 1166398
>ref|XM_870217.1| PREDICTED: Bos taurus similar to ciliary rootlet coiled-coil, rootletin (LOC617887), mRNA Length = 990 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gctgctcctgctggcgccgc 297 |||||||||||||||||||| Sbjct: 316 gctgctcctgctggcgccgc 297
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 cgaggccgtggcgcgcgccg 408 |||||||||||||||||||| Sbjct: 3197800 cgaggccgtggcgcgcgccg 3197781
>ref|XM_533945.2| PREDICTED: Canis familiaris similar to Scaffold attachment factor B2, transcript variant 1 (LOC476740), mRNA Length = 2910 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gctgctcctgctggcgccgc 297 |||||||||||||||||||| Sbjct: 2203 gctgctcctgctggcgccgc 2184
>gb|AC137997.2| Oryza sativa chromosome 3 BAC OJ1499_D04 genomic sequence, complete sequence Length = 91084 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ggagacggagacagaccaag 42 |||||||||||||||||||| Sbjct: 1819 ggagacggagacagaccaag 1838
>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains the CDH22 gene for cadherin-like 22, a novel gene and two CpG islands, complete sequence Length = 147815 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 gcggagctcgttcccctacttcgc 235 |||||||||||||||| ||||||| Sbjct: 68212 gcggagctcgttcccccacttcgc 68235
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgaggccgtggcgcgcgccg 408 |||||||||||||||||||| Sbjct: 196716 cgaggccgtggcgcgcgccg 196735
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgaggccgtggcgcgcgccg 408 |||||||||||||||||||| Sbjct: 110510 cgaggccgtggcgcgcgccg 110529
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgaggccgtggcgcgcgccg 408 |||||||||||||||||||| Sbjct: 186305 cgaggccgtggcgcgcgccg 186324
>gb|DQ436925.1| Setaria viridis ramosa 3 (RA3) mRNA, partial cds Length = 1020 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 gtccatggccggcgccaaggtgga 382 |||||| ||||||||||||||||| Sbjct: 645 gtccatcgccggcgccaaggtgga 668
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 29783447 gccgtggcgcgcgccgtgct 29783466
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 acgctgctgtgcgggcggag 217 |||||||||||||||||||| Sbjct: 130344 acgctgctgtgcgggcggag 130363
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ggcgcgggcgcgaccacgat 115 |||||||||||||||||||| Sbjct: 901929 ggcgcgggcgcgaccacgat 901910
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_D05 Length = 128178 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 115837 gccgtggcgcgcgccgtgct 115818
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1307A11 Length = 131538 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 34457 gccgtggcgcgcgccgtgct 34438
>dbj|D50928.1| Homo sapiens mRNA for KIAA0138 gene, partial cds Length = 3233 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gctgctcctgctggcgccgc 297 |||||||||||||||||||| Sbjct: 2191 gctgctcctgctggcgccgc 2172
>dbj|AK110959.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A10, full insert sequence Length = 1334 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 750 gccgtggcgcgcgccgtgct 731
>dbj|AK070506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050H20, full insert sequence Length = 1588 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 1030 gccgtggcgcgcgccgtgct 1049
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 catggccggcgccaaggtgg 381 |||||||||||||||||||| Sbjct: 3536776 catggccggcgccaaggtgg 3536795
>gb|AY110105.1| Zea mays CL22851_1 mRNA sequence Length = 845 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 gcgaccacgatgacggcgtcgccg 128 |||| ||||||||||||||||||| Sbjct: 300 gcgagcacgatgacggcgtcgccg 277
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 tgggagcgatggcgggcgcgggcg 105 |||||||| ||||||||||||||| Sbjct: 1820511 tgggagcggtggcgggcgcgggcg 1820534
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gccgtggcgcgcgccgtgct 412 |||||||||||||||||||| Sbjct: 64373 gccgtggcgcgcgccgtgct 64392
>gb|AC004611.1|AC004611 Homo sapiens chromosome 19, cosmid F24200, complete sequence Length = 47055 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gctgctcctgctggcgccgc 297 |||||||||||||||||||| Sbjct: 14016 gctgctcctgctggcgccgc 14035
>emb|BX004852.5| Mouse DNA sequence from clone RP23-26D22 on chromosome X, complete sequence Length = 165777 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 gctgctcctgctggcgccgctcgc 301 ||||||||||||| |||||||||| Sbjct: 76738 gctgctcctgctgccgccgctcgc 76715
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 392 ggccgtggcgcgcgccgtgctgccccag 419 |||| ||||| ||||||||||||||||| Sbjct: 3052688 ggccttggcgtgcgccgtgctgccccag 3052715 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 392 ggccgtggcgcgcgccgtgctgccccag 419 |||| ||||| ||||||||||||||||| Sbjct: 1251960 ggccttggcgtgcgccgtgctgccccag 1251933 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 392 ggccgtggcgcgcgccgtgctgccccag 419 |||| ||||| ||||||||||||||||| Sbjct: 919962 ggccttggcgtgcgccgtgctgccccag 919989 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,757,548 Number of Sequences: 3902068 Number of extensions: 2757548 Number of successful extensions: 68024 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 65041 Number of HSP's gapped (non-prelim): 2974 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
