ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58c12 |
|---|---|
| Clone Library Name | barley_pub |
>BIOH_VIBCH (Q9KNL4) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 255 Score = 33.5 bits (75), Expect = 0.24 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +1 Query: 313 GRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVYIPDLLFFG 438 G+ +VLVHG+ G V WQ AL+ H+ V++ DL +G Sbjct: 11 GQGQDLVLVHGWGMNGAV-WQQTAQALSDHFRVHVVDLPGYG 51
>BIOH_VIBF1 (Q5E8N3) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 257 Score = 33.5 bits (75), Expect = 0.24 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = +1 Query: 310 EGRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVYIPDLLFFG 438 EG +VL+HG+ G V WQ L++HY V+ DL +G Sbjct: 10 EGEGSDLVLIHGWGMNGAV-WQTTSEKLSQHYRVHTVDLSGYG 51
>RISB_SYNY3 (P73527) 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (DMRL| synthase) (Lumazine synthase) (Riboflavin synthase beta chain) Length = 164 Score = 31.6 bits (70), Expect = 0.91 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = +1 Query: 178 LRQHTVDVDDAGTVLTF-WVPKD-KVPSNNSTVAPEEKQSE---ASKVKEGRRPSVVLVH 342 L++H +DVD AGT + + WVP +VP +A + V G+ P V Sbjct: 40 LKRHGIDVDPAGTQVDYIWVPGSFEVPLVTRKLAVSGQYDAIICLGAVIRGQTPHFDFVA 99 Query: 343 GFAAEGIVTWQFQVG 387 G AA+GI Q G Sbjct: 100 GEAAKGIAAIASQTG 114
>TPSY_SCHPO (Q9UUI7) Putative alpha,alpha-trehalose-phosphate synthase| [UDP-forming] subunit 100 kDa subunit (EC 2.4.1.15) (Trehalose-6-phosphate synthase) (UDP-glucose-glucosephosphate glucosyltransferase) Length = 891 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -3 Query: 276 RRDGRVVAGDLVLGYPEGEHGAGVVDIDG-VLPEPRPLDQEVQQRLLRLHQVHHP 115 R +G AG+L E +HG V +DG VL EP + + + H + +P Sbjct: 777 RENGLRSAGELASSINETQHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNP 831
>EF1A_RHYAM (P27634) Elongation factor 1-alpha (EF-1-alpha) (Fragment)| Length = 412 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = -3 Query: 225 GEHGAGVVDIDGVLPEPRPLDQEVQQRLLRLHQVHHPTPT*VCSLTTGVVLVG 67 GE G +D +LP PRP DQ ++ L ++++ V L TG++ G Sbjct: 172 GEGKCGSXALDAILPPPRPTDQALRLPLPDVYKIGGIGTVPVGRLETGILKPG 224
>Y2734_MYCBO (P0A573) Hypothetical protein Mb2734| Length = 341 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 313 GRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVYIPDLLFFG 438 G P+++L+HG + TW LA+ + V PDLL G Sbjct: 35 GSGPAILLIHGIG-DNSTTWNGVHAKLAQRFTVIAPDLLGHG 75
>Y2715_MYCTU (P0A572) Hypothetical protein Rv2715/MT2788| Length = 341 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 313 GRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVYIPDLLFFG 438 G P+++L+HG + TW LA+ + V PDLL G Sbjct: 35 GSGPAILLIHGIG-DNSTTWNGVHAKLAQRFTVIAPDLLGHG 75
>BIOH_IDILO (Q5QZC0) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 255 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +1 Query: 313 GRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVYIPDLLFFG 438 G +V++HG+ + WQ V AL++H+ +Y DL FG Sbjct: 9 GTGTPIVVLHGWGMNSNI-WQPVVPALSEHFQLYCVDLPGFG 49
>DAPK3_RAT (O88764) Death-associated protein kinase 3 (EC 2.7.11.1) (DAP| kinase 3) (DAP-like kinase) (Dlk) (ZIP-kinase) Length = 448 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/38 (31%), Positives = 25/38 (65%) Frame = +1 Query: 229 WVPKDKVPSNNSTVAPEEKQSEASKVKEGRRPSVVLVH 342 ++ K ++PS+ V+ EE + E S ++E R P+++ +H Sbjct: 43 FIKKRRLPSSRRGVSREEIEREVSILREIRHPNIITLH 80
>DAPK3_MOUSE (O54784) Death-associated protein kinase 3 (EC 2.7.11.1) (DAP| kinase 3) (DAP-like kinase) (Dlk) (ZIP-kinase) Length = 448 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/38 (31%), Positives = 25/38 (65%) Frame = +1 Query: 229 WVPKDKVPSNNSTVAPEEKQSEASKVKEGRRPSVVLVH 342 ++ K ++PS+ V+ EE + E S ++E R P+++ +H Sbjct: 43 FIKKRRLPSSRRGVSREEIEREVSILREIRHPNIITLH 80
>HSP1_PANPA (P35308) Sperm protamine P1 (Cysteine-rich protamine)| Length = 49 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 267 RRAGREAERGVQSQGRPAAICGARARLRGRRH 362 RR+ R + Q+Q R C R+RLR RRH Sbjct: 18 RRSRRRKRQSCQTQRRAMRCCRRRSRLRRRRH 49
>PO5F1_MACMU (Q5TM49) POU domain, class 5, transcription factor 1| (Octamer-binding transcription factor 3) (Oct-3) Length = 360 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -3 Query: 267 GRVVAGDLVLGYPEGEHGAGV-VDIDGVLPEP 175 G V G L PEGE GAGV + DG PEP Sbjct: 83 GLVPQGGLETSQPEGEAGAGVESNSDGASPEP 114
>ARGA_BUCAI (O66143) Amino-acid acetyltransferase (EC 2.3.1.1)| (N-acetylglutamate synthase) (AGS) (NAGS) Length = 442 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 300 GRLALLLFRRDGRVVAGDLVLGYPEGEHGAGVVDIDGVLPEPRPLDQE 157 G L LF RDG + +V+ E GA + DI G+L RPL+ + Sbjct: 273 GALLQELFSRDG--IGTQMVMESAEKIRGASINDIGGILELIRPLEHK 318
>YEEZ_ECOLI (P0AD12) Protein yeeZ precursor| Length = 274 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -3 Query: 330 HRWPPAFLDFGRLALLLF--RRDGRVVAGDLVLGYPEGEHGAGVVDIDGVL 184 H P +D RLA L+ R GR AG P+GEHG +V ++ V+ Sbjct: 147 HNLPGTSVDILRLAGLVGPGRHPGRFFAGKTA---PDGEHGVNLVHLEDVI 194
>YEEZ_ECO57 (P0AD13) Protein yeeZ precursor| Length = 274 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -3 Query: 330 HRWPPAFLDFGRLALLLF--RRDGRVVAGDLVLGYPEGEHGAGVVDIDGVL 184 H P +D RLA L+ R GR AG P+GEHG +V ++ V+ Sbjct: 147 HNLPGTSVDILRLAGLVGPGRHPGRFFAGKTA---PDGEHGVNLVHLEDVI 194
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 29.3 bits (64), Expect = 4.5 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Frame = +1 Query: 178 LRQHTVDVDDAG---------------TVLTFWVPKDKVPSNNSTVAPEEKQSEASKVKE 312 LR H + V D+G +++ P P ++ AP +S +S+V E Sbjct: 2006 LRLHHMSVADSGEYVCRANNNIDAQETSIMISVSPSTNSPPAPASPAPIRIESSSSRVAE 2065 Query: 313 GRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVY 414 G+ + V A VTW + G+L H+ + Sbjct: 2066 GQTLDLNCVVPGHAHAQVTWHKRGGSLPTHHQTH 2099
>YCAI_ECOLI (P37443) Hypothetical protein ycaI| Length = 754 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -3 Query: 324 WPPAFLDFGRLALLLFRRDGRVVAGDLVLGYPEGEHGAGVV 202 W LD G+ ++ R+G+ + D L +PEG+ G ++ Sbjct: 499 WQLYMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSGQQLI 539
>CLH2_ARATH (Q9M7I7) Chlorophyllase-2, chloroplast precursor (EC 3.1.1.14)| (AtCLH2) (Chlorophyll-chlorophyllido hydrolase 2) (Chlase 2) Length = 318 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/33 (36%), Positives = 23/33 (69%) Frame = +1 Query: 250 PSNNSTVAPEEKQSEASKVKEGRRPSVVLVHGF 348 PS+ ++ +P ++ A+ V+EG P V+L+HG+ Sbjct: 33 PSSRASPSPPKQLLVATPVEEGDYPVVMLLHGY 65
>TRPG_ASPNG (P05328) Anthranilate synthase component 2 (EC 4.1.3.27)| (Anthranilate synthase component II) [Includes: Glutamine amidotransferase; Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS); N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3 Length = 770 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -3 Query: 132 HQVHHPTPT*VCSLTTGVVLVG*QDSFMRGVYE 34 H HHPT S + V+L+ DSF VY+ Sbjct: 9 HSPHHPTKAAQLSTASNVILIDNYDSFTWNVYQ 41
>ARGA_SHEON (P59292) Amino-acid acetyltransferase (EC 2.3.1.1)| (N-acetylglutamate synthase) (AGS) (NAGS) Length = 445 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -3 Query: 315 AFLDFGRLALLLFRRDGRVVAGDLVLGYPEGEHGAGVVDIDGVLPEPRPLDQE 157 ++LD G L LF R+G + +V E A + DI G+L RPL+++ Sbjct: 272 SYLDDGALLQELFSREG--IGTQIVTESAERLRRASISDIGGILNLIRPLEEQ 322
>CYAA_SALTY (P0A1A7) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 848 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +1 Query: 286 QSEASKVKEGRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVYIPD 423 Q E ++VK PSVV GFA+EGI+ + F+ K +++YI D Sbjct: 721 QVETNQVK---LPSVV--DGFASEGIIQFFFEETGDEKGFNIYILD 761
>CYAA_SALTI (P0A1A8) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 848 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +1 Query: 286 QSEASKVKEGRRPSVVLVHGFAAEGIVTWQFQVGALAKHYDVYIPD 423 Q E ++VK PSVV GFA+EGI+ + F+ K +++YI D Sbjct: 721 QVETNQVK---LPSVV--DGFASEGIIQFFFEETGDEKGFNIYILD 761
>LXN_RAT (Q64361) Latexin (Endogenous carboxypeptidase inhibitor) (ECI)| (Tissue carboxypeptidase inhibitor) (TCI) Length = 223 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Frame = +1 Query: 229 WVPKDKVPSNNSTVAPEEKQSEASKVKEGRRPS-------VVLVHGFAAEGIVTWQFQV 384 WV V NST K ++ VK+ +R VL+H A++ I+ WQ QV Sbjct: 142 WVACGYVMWQNSTEDTWYKMAKIQTVKQVQRNDDFIELDYTVLLHDVASQEIIPWQMQV 200
>AT10A_HUMAN (O60312) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)| (ATPVA) (Aminophospholipid translocase VA) Length = 1499 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -1 Query: 356 SAAKPCTSTTDGRRPSLTLDA-SLCFSSGATVE 261 S P TST GRRPSL +D SL ++ +E Sbjct: 956 SLCPPSTSTASGRRPSLVIDGRSLAYALEKNLE 988
>MUTS_DESVH (P61666) DNA mismatch repair protein mutS| Length = 905 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Frame = +1 Query: 64 LPNQHYSSCQRAHSSGSRMVNLVEAQKPLLHFLIKW-----AGLRQHTVDVDDAGTVLTF 228 L N + +R ++V+ + +K L + L + A R + + D L F Sbjct: 518 LANAERFTTERLKELEEKLVSATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDF 577 Query: 229 WVPKDKVPSNNSTVAPEEKQSEASKVKEGRRPSVVLVHGFAA 354 W V N V P+ ++EGR P V + G A+ Sbjct: 578 WQSLADVARRNGWVRPDVHTGHDIVIREGRHPVVEAMQGSAS 619
>CCW12_YEAST (Q12127) Covalently-linked cell wall protein 12 precursor (Protein| Alpha0.6) Length = 133 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = +1 Query: 190 TVDVDDAGTVLTFWVP-KDKVPSNNSTVAPEEKQSEASKVKEGRRP--SVVLVHGFAAEG 360 TV VDD T T W P + P N ++ A +EA K P SV G AA+ Sbjct: 58 TVTVDDVITQYTTWCPLTTEAPKNGTSTAAPVTSTEAPKNTTSAAPTHSVTSYTGAAAKA 117 Query: 361 I 363 + Sbjct: 118 L 118
>CYAA_YERPE (P40127) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 850 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +1 Query: 334 LVHGFAAEGIVTWQFQVGALAKHYDVYIPD 423 +V GFA+EGI+ + F+ A K +++YI D Sbjct: 732 VVDGFASEGIIQFFFEGTADEKGFNIYILD 761
>ARGA_YERPE (Q8ZH86) Amino-acid acetyltransferase (EC 2.3.1.1)| (N-acetylglutamate synthase) (AGS) (NAGS) Length = 441 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -3 Query: 315 AFLDFGRLALLLFRRDGRVVAGDLVLGYPEGEHGAGVVDIDGVLPEPRPLDQE 157 ++ + G L LF RDG + +V+ E A + DI G+L RPL+Q+ Sbjct: 268 SYQEDGALIQELFSRDG--IGTQIVMESAEQVRRATINDIGGILELIRPLEQQ 318
>CYAA_YERIN (P30528) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 848 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +1 Query: 334 LVHGFAAEGIVTWQFQVGALAKHYDVYIPD 423 +V GFA+EGI+ + F+ A K +++YI D Sbjct: 732 VVDGFASEGIIQFFFEGTADEKGFNIYILD 761
>ARGA_PHOLL (Q7N8S4) Amino-acid acetyltransferase (EC 2.3.1.1)| (N-acetylglutamate synthase) (AGS) (NAGS) Length = 448 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 300 GRLALLLFRRDGRVVAGDLVLGYPEGEHGAGVVDIDGVLPEPRPLDQE 157 G L LF RDG + +V+ E A + DI G+L RPL+Q+ Sbjct: 273 GSLLQELFSRDG--IGTQIVMESAEQIRRANINDIGGILELIRPLEQQ 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,666,599 Number of Sequences: 219361 Number of extensions: 1233727 Number of successful extensions: 4490 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4331 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4489 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
