>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 2e-21
 Identities = 116/136 (85%)
 Strand = Plus / Minus

                                                                            
Query: 118      atggtgaacttggtggaggcgcaaaagccgctgctgcacttcctgatcaagtgggcgggg 177
                ||||||||||||||||| ||||  ||||||||| || |||||||  | | | |||| |||
Sbjct: 25498023 atggtgaacttggtggaagcgccgaagccgctggtgtacttcctcctgaggagggcaggg 25497964

                                                                            
Query: 178      ctccggcagcacaccgtcgatgtcgacgacgccggcaccgtgctcaccttctgggtaccc 237
                |||||||||||||||||||| ||||||| ||||||||| ||| ||| ||||||| | |||
Sbjct: 25497963 ctccggcagcacaccgtcgacgtcgacggcgccggcacggtgatcagcttctggatgccc 25497904

                                
Query: 238      aaggacaaggtcccca 253
                 ||| |||||||||||
Sbjct: 25497903 gagggcaaggtcccca 25497888



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 331      gtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttccaggtt 384
                |||||||||||||||||||| ||||| ||| | ||||| |||||||||||||||
Sbjct: 25497771 gtgctcgtgcacggcttcgccgccgagggcgtcgtcacgtggcagttccaggtt 25497718



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 384      tggtgcgctggcgaagcactacgacgtgtacatcccggacctgctgttcttcgg 437
                ||||| ||||||||||||||||||||||||| | ||||||||||| | ||||||
Sbjct: 25497609 tggtgtgctggcgaagcactacgacgtgtacgtgccggacctgctctacttcgg 25497556

>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696E01
          Length = 194056

 Score =  111 bits (56), Expect = 2e-21
 Identities = 116/136 (85%)
 Strand = Plus / Minus

                                                                         
Query: 118   atggtgaacttggtggaggcgcaaaagccgctgctgcacttcctgatcaagtgggcgggg 177
             ||||||||||||||||| ||||  ||||||||| || |||||||  | | | |||| |||
Sbjct: 25626 atggtgaacttggtggaagcgccgaagccgctggtgtacttcctcctgaggagggcaggg 25567

                                                                         
Query: 178   ctccggcagcacaccgtcgatgtcgacgacgccggcaccgtgctcaccttctgggtaccc 237
             |||||||||||||||||||| ||||||| ||||||||| ||| ||| ||||||| | |||
Sbjct: 25566 ctccggcagcacaccgtcgacgtcgacggcgccggcacggtgatcagcttctggatgccc 25507

                             
Query: 238   aaggacaaggtcccca 253
              ||| |||||||||||
Sbjct: 25506 gagggcaaggtcccca 25491



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 331   gtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttccaggtt 384
             |||||||||||||||||||| ||||| ||| | ||||| |||||||||||||||
Sbjct: 25374 gtgctcgtgcacggcttcgccgccgagggcgtcgtcacgtggcagttccaggtt 25321



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 384   tggtgcgctggcgaagcactacgacgtgtacatcccggacctgctgttcttcgg 437
             ||||| ||||||||||||||||||||||||| | ||||||||||| | ||||||
Sbjct: 25212 tggtgtgctggcgaagcactacgacgtgtacgtgccggacctgctctacttcgg 25159

>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 117    gatggtgaacttggtggaggcgcaaaagccgctgctg 153
              |||||||||||| ||||||||||| ||||||||||||
Sbjct: 117897 gatggtgaacttcgtggaggcgcagaagccgctgctg 117933



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 328    gtggtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttc 378
              ||||||||||| ||||||||||| ||||| || || ||||| |||||||||
Sbjct: 118141 gtggtgctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 118191

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 117      gatggtgaacttggtggaggcgcaaaagccgctgctg 153
                |||||||||||| ||||||||||| ||||||||||||
Sbjct: 29244734 gatggtgaacttcgtggaggcgcagaagccgctgctg 29244698



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 328      gtggtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttc 378
                ||||||||||| ||||||||||| ||||| || || ||||| |||||||||
Sbjct: 29244490 gtggtgctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 29244440

>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 117   gatggtgaacttggtggaggcgcaaaagccgctgctg 153
             |||||||||||| ||||||||||| ||||||||||||
Sbjct: 42079 gatggtgaacttcgtggaggcgcagaagccgctgctg 42043



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 328   gtggtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttc 378
             ||||||||||| ||||||||||| ||||| || || ||||| |||||||||
Sbjct: 41835 gtggtgctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 41785

>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 117    gatggtgaacttggtggaggcgcaaaagccgctgctg 153
              |||||||||||| ||||||||||| ||||||||||||
Sbjct: 134702 gatggtgaacttcgtggaggcgcagaagccgctgctg 134666



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                 
Query: 328    gtggtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttc 378
              ||||||||||| ||||||||||| ||||| || || ||||| |||||||||
Sbjct: 134458 gtggtgctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 134408

>dbj|AK059034.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C07, full
           insert sequence
          Length = 1798

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 117 gatggtgaacttggtggaggcgcaaaagccgctgctg 153
           |||||||||||| ||||||||||| ||||||||||||
Sbjct: 433 gatggtgaacttcgtggaggcgcagaagccgctgctg 469



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 328 gtggtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttc 378
           ||||||||||| ||||||||||| ||||| || || ||||| |||||||||
Sbjct: 677 gtggtgctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 727

>ref|XM_467386.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1020

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 118 atggtgaacttggtggaggcgcaaaagccgctgctg 153
           ||||||||||| ||||||||||| ||||||||||||
Sbjct: 1   atggtgaacttcgtggaggcgcagaagccgctgctg 36



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 328 gtggtgctcgtgcacggcttcgcggccgaaggcattgtcacctggcagttc 378
           ||||||||||| ||||||||||| ||||| || || ||||| |||||||||
Sbjct: 244 gtggtgctcgtccacggcttcgccgccgagggaatcgtcacgtggcagttc 294

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 167817 cgcgccggaagagaagcagag 167797

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 186501 cgcgccggaagagaagcagag 186481

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 181983 cgcgccggaagagaagcagag 181963

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 176162 cgcgccggaagagaagcagag 176142

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 142     aagccgctgctgcacttcctg 162
               |||||||||||||||||||||
Sbjct: 2675514 aagccgctgctgcacttcctg 2675494

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 176162 cgcgccggaagagaagcagag 176142

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 331     gtgctcgtgcacggcttcgcg 351
               |||||||||||||||||||||
Sbjct: 2426511 gtgctcgtgcacggcttcgcg 2426531

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 167308 cgcgccggaagagaagcagag 167288

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 180362 cgcgccggaagagaagcagag 180342

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 180361 cgcgccggaagagaagcagag 180341

>gb|U70214.1|ECU70214 Escherichia coli chromosome minutes 4-6
          Length = 123171

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 270  cgcgccggaagagaagcagag 290
            |||||||||||||||||||||
Sbjct: 7237 cgcgccggaagagaagcagag 7217

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 270    cgcgccggaagagaagcagag 290
              |||||||||||||||||||||
Sbjct: 190305 cgcgccggaagagaagcagag 190285

>ref|XM_868881.1| PREDICTED: Bos taurus hypothetical protein LOC616772 (LOC616772),
            mRNA
          Length = 1728

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 117  gatggtgaacttggtggaggcgca 140
            |||| |||||||||||||||||||
Sbjct: 1200 gatgttgaacttggtggaggcgca 1223

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 194     tcgatgtcgacgacgccggcaccgtgct 221
               ||||||||||||| ||||||| ||||||
Sbjct: 1404307 tcgatgtcgacgatgccggcaacgtgct 1404280



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 223    accttctgggtacccaaggacaag 246
              ||||||| ||||||||||||||||
Sbjct: 383576 accttctcggtacccaaggacaag 383553

>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12
          Length = 306650

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tcgatgtcgacgacgccggc 213
             ||||||||||||||||||||
Sbjct: 57513 tcgatgtcgacgacgccggc 57494

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    acaaggtccccagcaacaac 261
              ||||||||||||||||||||
Sbjct: 465789 acaaggtccccagcaacaac 465770

>gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like element transposase gene,
            partial cds; and fibroin gene, complete cds
          Length = 9921

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gccgctgctgcacttcctga 163
            ||||||||||||||||||||
Sbjct: 8858 gccgctgctgcacttcctga 8839

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 304      gtcaaggaaggccggcggcc 323
                ||||||||||||||||||||
Sbjct: 20153654 gtcaaggaaggccggcggcc 20153635

>gb|AE004826.1| Pseudomonas aeruginosa PAO1, section 387 of 529 of the complete
            genome
          Length = 10458

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  tcgacgacgccggcaccgtg 219
            ||||||||||||||||||||
Sbjct: 7424 tcgacgacgccggcaccgtg 7443

>gb|AC153642.7| Mus musculus 6 BAC RP23-334E23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 227781

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    cataaagctatcttgctacc 68
             ||||||||||||||||||||
Sbjct: 34895 cataaagctatcttgctacc 34876


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,883,465
Number of Sequences: 3902068
Number of extensions: 2883465
Number of successful extensions: 52338
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51767
Number of HSP's gapped (non-prelim): 569
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)