ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology ... 29 2.3
2PKN2_MYXXA (P54736) Serine/threonine-protein kinase pkn2 (EC 2.7... 29 3.0
3FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor 28 6.8

>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology|
           domain-containing protein 4 (Leucine-rich neuronal
           protein)
          Length = 683

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
 Frame = +3

Query: 96  EGDAXAEPAHLDGRPAHVVGHXXXXXXXXXXXXXXXQSQAGWGDHAGHVRR---AGERAR 266
           +G A  +P  +D   +HV G                   AG  + A   RR   AGE  R
Sbjct: 344 DGSADGDPVQIDFIDSHVPGEDEERGTVEEQRPPELSPGAGDRERAPSSRREEPAGEERR 403

Query: 267 RPGSEQQ*KETDVRFKDEGXDW 332
           RP + Q  +E + R + +   W
Sbjct: 404 RPDTLQLWQERERRQQQQSGAW 425



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>PKN2_MYXXA (P54736) Serine/threonine-protein kinase pkn2 (EC 2.7.11.1)|
          Length = 830

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 37  PEREAVTIEHGGQHSSGAMERATPVRSPHTSTA 135
           P+  + T   G   SSG+   A P  SPHT TA
Sbjct: 337 PQASSGTAAFGVASSSGSASGALPAASPHTGTA 369



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>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 122 CGLRTGVALSIAPELCCPPCS 60
           C    G  L IAP  CCP C+
Sbjct: 67  CAFEKGEVLWIAPNQCCPQCA 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.125    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,311,559
Number of Sequences: 219361
Number of extensions: 694028
Number of successful extensions: 1208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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