>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor|
           (Clone PC18I) (Fragment)
          Length = 260

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 29/36 (80%), Positives = 30/36 (83%)
 Frame = +2

Query: 311 FGTIASADEAEHGLAAAEYPWPHAGILSSYDHASXR 418
           F T+ASADEAEHGL    YPWPHAGILSSYDHAS R
Sbjct: 11  FATVASADEAEHGLECPSYPWPHAGILSSYDHASIR 46

>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor|
           (Clone PC13III)
          Length = 320

 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 27/36 (75%), Positives = 28/36 (77%)
 Frame = +2

Query: 311 FGTIASADEAEHGLAAAEYPWPHAGILSSYDHASXR 418
           F TIA +DEAEHGL    YPWPH GILSSYDHAS R
Sbjct: 71  FATIAYSDEAEHGLECPNYPWPHEGILSSYDHASIR 106

>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 309

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 317 TIASADEAEHGLAAAEYPWPHAGILSSYDHASXR 418
           T  +   AEHGL A  Y W H G   ++DHAS R
Sbjct: 58  TAEAMTAAEHGLHAPAYAWSHNGPFETFDHASIR 91

>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 292

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 338 AEHGLAAAEYPWPHAGILSSYDHASXR 418
           AEHGL A  Y W H G L ++DH+S R
Sbjct: 50  AEHGLHAPGYGWSHNGPLETFDHSSIR 76

>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 332

 Score = 34.7 bits (78), Expect = 0.092
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 311 FGTIASADEAEHGLAAAEYPWPHAGILSSYDHASXR 418
           +G  ++   AE GL A +YPW H   L ++DH + R
Sbjct: 65  YGFASAMTPAEEGLHATKYPWVHEQWLKTFDHQALR 100

>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor|
           (Cytochrome c-1)
          Length = 325

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 326 SADEAEHGLAAAEYPWPHAGILSSYDHASXR 418
           SA + E  L    YPW H G+LSS DH S R
Sbjct: 83  SASDLE--LHPPSYPWSHRGLLSSLDHTSIR 111

>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor|
           (Cytochrome c-1)
          Length = 325

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 326 SADEAEHGLAAAEYPWPHAGILSSYDHASXR 418
           SA + E  L    YPW H G+LSS DH S R
Sbjct: 83  SASDLE--LHPPSYPWSHRGLLSSLDHTSIR 111

>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome|
           c-1)
          Length = 241

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 365 YPWPHAGILSSYDHASXR 418
           YPW H G+LSS DH S R
Sbjct: 10  YPWSHRGLLSSLDHTSIR 27

>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,|
           arginine/serine-rich 2-interacting protein)
           (SC35-interacting protein 1) (CTD-associated SR protein
           11) (Splicing regulatory protein 129) (SRrp129)
           (NY-REN-40 antigen)
          Length = 1148

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 KRPEAPTPRRANALSPAEDSSCFPRNEESR 217
           KRP++P+PRR       +  S  P+NE +R
Sbjct: 497 KRPQSPSPRRETGKESRKSQSPSPKNESAR 526

>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)|
           (Transcription factor GATA-B) (dGATA-B) (Protein
           serpent)
          Length = 1264

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 362 LQLPNHARLHLQMLSYQNIKDQKHQLREEPMLSVQQRTLH 243
           +Q PN  + HLQ   +Q  + Q+HQ  ++  L  QQ+  H
Sbjct: 519 MQSPNQTQAHLQQQHHQQ-QQQQHQQHQQQQLQQQQQQHH 557

>DOC2B_MOUSE (P70169) Double C2-like domain-containing protein beta (Doc2-beta)|
          Length = 412

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 318 VPKHKRPEAPTPRRANALSPAEDSSCFPRNEESRDEPED 202
           +P    P AP P  A A SPA  +S    ++ +RD+ ED
Sbjct: 44  LPPTAAPRAPAPPDAPARSPAASASPRSPSDGARDDDED 82

>QCRB_MYCLE (P15878) Ubiquinol-cytochrome c reductase cytochrome b subunit|
          Length = 551

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 253 LCWTESIGSSRSWCFWSFMFWYDSI 327
           + WTE  G +R W  W F FW+ +I
Sbjct: 309 MMWTE--GLARIWPAWEFYFWHHTI 331

>UPC2_YEAST (Q12151) Sterol uptake control protein 2 (Mannoprotein regulation|
           by oxygen protein 4)
          Length = 913

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 383 QHAARGTLQLPNHARLHLQMLSYQNIKDQKH-QLREEPMLSVQQRTLHAFPEMKKAEMSQ 207
           Q+     LQL  H ++ LQ   YQ ++ ++H Q++++    +QQ   H   + ++  + Q
Sbjct: 293 QYQLHQQLQLQQHQQVQLQQ--YQQLRQEQHQQVQQQQQEQLQQYQQHFLQQQQQVLLQQ 350

Query: 206 K 204
           +
Sbjct: 351 E 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,409,995
Number of Sequences: 219361
Number of extensions: 753066
Number of successful extensions: 2369
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)