ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016510.1| Zea mays clone Contig343 mRNA sequence 232 7e-58
2gb|AY103572.1| Zea mays PCO092029 mRNA sequence 230 3e-57
3dbj|AK070578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
4gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 212 7e-52
6ref|NM_190059.1| Oryza sativa (japonica cultivar-group), predic... 141 2e-30
7dbj|AK073125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
8dbj|AK069403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
10dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D... 139 8e-30
11dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 48 0.023
12ref|XM_472861.1| Oryza sativa (japonica cultivar-group), predic... 44 0.36
13gb|AC125042.4| Mus musculus BAC clone RP23-339G10 from chromosom... 44 0.36
14gb|AC125318.4| Mus musculus BAC clone RP24-301F13 from chromosom... 44 0.36
15gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosom... 44 0.36
16emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4,... 44 0.36
17gb|AC157513.2| Mus musculus BAC clone RP24-280G4 from chromosome... 44 0.36
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
19gb|AC151975.1| Mus musculus BAC clone RP24-423F11 from 8, comple... 44 0.36
20emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chro... 44 0.36
21ref|NM_197016.1| Oryza sativa (japonica cultivar-group) hypothet... 42 1.4
22ref|XM_422081.1| PREDICTED: Gallus gallus similar to hypothetica... 42 1.4
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.4
24gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 geno... 42 1.4
25emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chr... 42 1.4
26emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.4
27dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.4
28dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
29dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
30gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055... 42 1.4
31gb|AF117812.1|AF117812 Oryctolagus cuniculus glucose transporter... 42 1.4
32gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
33ref|XM_472828.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
34gb|AF461092.1| Mus musculus chondroitin sulfate proteoglycan 5-I... 40 5.6
35gb|AF461090.1| Mus musculus chondroitin sulfate proteoglycan 5-I... 40 5.6
36gb|AF461089.1| Homo sapiens chondroitin sulfate proteoglycan 5-I... 40 5.6
37gb|AF461087.1| Homo sapiens chondroitin sulfate proteoglycan 5-I... 40 5.6
38gb|AF285607.2| Bos taurus fatty acid synthase (FASN) gene, compl... 40 5.6
39gb|AC131952.1| Homo sapiens BAC clone RP11-617H11 from 4, comple... 40 5.6
40emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 5.6
41gb|BC054574.1| Danio rerio aminolevulinate, delta-, synthetase 1... 40 5.6
42emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 40 5.6
43gb|AC016902.4|AC016902 Homo sapiens BAC clone RP11-217B19 from 1... 40 5.6
44gb|AC004847.3|AC004847 Homo sapiens clone RP4-647J21, complete s... 40 5.6
45gb|AC138466.12| Homo sapiens 12 BAC RP13-977J11 (Roswell Park Ca... 40 5.6
46gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome... 40 5.6
47gb|AC112512.6| Homo sapiens 3 BAC RP11-717D12 (Roswell Park Canc... 40 5.6
48emb|AL731780.6| Mouse DNA sequence from clone RP23-365D10 on chr... 40 5.6
49dbj|BS000123.1| Pan troglodytes chromosome 22 clone:PTB-109N23, ... 40 5.6
50emb|Z80771.1|HS253J14 Human DNA sequence from clone RP1-253J14 o... 40 5.6
51emb|BX571946.9| Zebrafish DNA sequence from clone DKEY-232H18 in... 40 5.6
52emb|BX649427.7| Zebrafish DNA sequence from clone DKEYP-85D7 in ... 40 5.6
53emb|AL732335.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.6
54dbj|AP003100.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.6
55dbj|AP001729.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.6
56emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
57emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
58ref|NM_201287.1| Danio rerio aminolevulinate, delta-, synthetase... 40 5.6
59gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, comp... 40 5.6
60dbj|AP000155.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 40 5.6
61dbj|AP000013.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 40 5.6
62dbj|AP001414.1| Homo sapiens genomic DNA, chromosome 21q22.2, cl... 40 5.6 
>gb|BT016510.1| Zea mays clone Contig343 mRNA sequence
          Length = 1417

 Score =  232 bits (117), Expect = 7e-58
 Identities = 228/265 (86%)
 Strand = Plus / Plus

                                                                       
Query: 148 aatggctgccggcagggccattaaccagcttctgaagaaaacttttcagagccagtcttc 207
           |||||||||||  |||| |||||||||||| ||||||| |||| |  | | ||||||| |
Sbjct: 121 aatggctgccgcaaggggcattaaccagctcctgaagagaactctctacaaccagtctgc 180

                                                                       
Query: 208 tggctcatctctgctttcttcatttcggggaaagcatgaagagtcctctgctggactgag 267
           ||| || || | |||||  ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 181 tggttcgtcgccgcttttctcatttcggggaaagcatgaagaatcctctgctggactgag 240

                                                                       
Query: 268 agcattggctcttctcggagttggtgcttctggtcttttatgttttggtacgatagcatc 327
           ||||||||||||||| ||||||||||| |||||||||||  |||||  ||| ||||||||
Sbjct: 241 agcattggctcttcttggagttggtgcctctggtcttttgagtttttctacaatagcatc 300

                                                                       
Query: 328 tgcagatgaagccgagcatggtttggcagctgcagagtacccctggccgcatgctggcat 387
           ||| |||||||| |||||||| ||||||||  |||| || |||||||| |||||||||||
Sbjct: 301 tgctgatgaagctgagcatggcttggcagccccagattatccctggccacatgctggcat 360

                                    
Query: 388 ccttagctcttacgatcacgcatca 412
           | | ||||| || ||||||||||||
Sbjct: 361 catgagctcgtatgatcacgcatca 385



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 85  cccgcgccgccgctcgtcggagccccgc 112
           |||||||||||||||| |||||| ||||
Sbjct: 64  cccgcgccgccgctcgccggagctccgc 91
to top
>gb|AY103572.1| Zea mays PCO092029 mRNA sequence
          Length = 1394

 Score =  230 bits (116), Expect = 3e-57
 Identities = 227/264 (85%)
 Strand = Plus / Plus

                                                                       
Query: 149 atggctgccggcagggccattaaccagcttctgaagaaaacttttcagagccagtcttct 208
           ||||||||||  |||| |||||||||||||||||||| || | | || | ||||||  ||
Sbjct: 166 atggctgccgcaaggggcattaaccagcttctgaagagaattctccacaaccagtccgct 225

                                                                       
Query: 209 ggctcatctctgctttcttcatttcggggaaagcatgaagagtcctctgctggactgaga 268
           ||  |||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 226 ggtccatggctgctttcttcatttcggggaaatcatgaagagtcctctgctggattgaga 285

                                                                       
Query: 269 gcattggctcttctcggagttggtgcttctggtcttttatgttttggtacgatagcatct 328
           |||||||| ||||| ||||||||||| || ||||||||  |||||| ||| |||||||||
Sbjct: 286 gcattggcgcttcttggagttggtgcctccggtcttttgagttttgctacaatagcatct 345

                                                                       
Query: 329 gcagatgaagccgagcatggtttggcagctgcagagtacccctggccgcatgctggcatc 388
           || |||||||| |||||||||||||||||  |||| || || ||||| ||||||||||||
Sbjct: 346 gctgatgaagctgagcatggtttggcagccccagattatccgtggccacatgctggcatc 405

                                   
Query: 389 cttagctcttacgatcacgcatca 412
            | |||||||| ||||| ||||||
Sbjct: 406 atgagctcttatgatcatgcatca 429
to top
>dbj|AK070578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061F14, full
           insert sequence
          Length = 1367

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Plus

                                                                       
Query: 200 cagtcttctggctcatctctgctttcttcatttcggggaaagcatgaagagtcctctgct 259
           ||||| || |||||||||||||| || || || |||  |||||||||||| ||||| |||
Sbjct: 256 cagtcctcaggctcatctctgctatcctcgttccggataaagcatgaagaatcctccgct 315

                                                                       
Query: 260 ggactgagagcattggctcttctcggagttggtgcttctggtcttttatgttttggtacg 319
           ||||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||| 
Sbjct: 316 ggactgagagcattggctcttcttggagttggtgcttctggtcttttaagctttgctaca 375

                                                                       
Query: 320 atagcatctgcagatgaagccgagcatggtttggcagctgcagagtacccctggccgcat 379
           ||||| |||||||||||||| ||||||||||||||||| || || || |||||||| |||
Sbjct: 376 atagcttctgcagatgaagctgagcatggtttggcagcagctgaatatccctggccacat 435

                               
Query: 380 gctggcatccttagctctta 399
           |||||||| |||||||||||
Sbjct: 436 gctggcattcttagctctta 455
to top
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1057_C01, complete sequence
          Length = 142752

 Score =  212 bits (107), Expect = 7e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                         
Query: 209   ggctcatctctgctttcttcatttcggggaaagcatgaagagtcctctgctggactgaga 268
             |||||||||||||| || || || |||  |||||||||||| ||||| ||||||||||||
Sbjct: 95193 ggctcatctctgctatcctcgttccggataaagcatgaagaatcctccgctggactgaga 95134

                                                                         
Query: 269   gcattggctcttctcggagttggtgcttctggtcttttatgttttggtacgatagcatct 328
             |||||||||||||| |||||||||||||||||||||||| | |||| ||| ||||| |||
Sbjct: 95133 gcattggctcttcttggagttggtgcttctggtcttttaagctttgctacaatagcttct 95074

                                                                         
Query: 329   gcagatgaagccgagcatggtttggcagctgcagagtacccctggccgcatgctggcatc 388
             ||||||||||| ||||||||||||||||| || || || |||||||| ||||||||||| 
Sbjct: 95073 gcagatgaagctgagcatggtttggcagcagctgaatatccctggccacatgctggcatt 95014

                        
Query: 389   cttagctctta 399
             |||||||||||
Sbjct: 95013 cttagctctta 95003
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  212 bits (107), Expect = 7e-52
 Identities = 170/191 (89%)
 Strand = Plus / Minus

                                                                            
Query: 209      ggctcatctctgctttcttcatttcggggaaagcatgaagagtcctctgctggactgaga 268
                |||||||||||||| || || || |||  |||||||||||| ||||| ||||||||||||
Sbjct: 13411730 ggctcatctctgctatcctcgttccggataaagcatgaagaatcctccgctggactgaga 13411671

                                                                            
Query: 269      gcattggctcttctcggagttggtgcttctggtcttttatgttttggtacgatagcatct 328
                |||||||||||||| |||||||||||||||||||||||| | |||| ||| ||||| |||
Sbjct: 13411670 gcattggctcttcttggagttggtgcttctggtcttttaagctttgctacaatagcttct 13411611

                                                                            
Query: 329      gcagatgaagccgagcatggtttggcagctgcagagtacccctggccgcatgctggcatc 388
                ||||||||||| ||||||||||||||||| || || || |||||||| ||||||||||| 
Sbjct: 13411610 gcagatgaagctgagcatggtttggcagcagctgaatatccctggccacatgctggcatt 13411551

                           
Query: 389      cttagctctta 399
                |||||||||||
Sbjct: 13411550 cttagctctta 13411540
to top
>ref|NM_190059.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 915

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 ctggactgagagcattggctcttctcggagttggtgcttctggtcttttatgttttggta 317
           ||||| |||||||||||||| |||| ||||||||||||||||| |||||| |||||| ||
Sbjct: 110 ctggattgagagcattggctattctgggagttggtgcttctggccttttaagttttgcta 169

                                                                       
Query: 318 cgatagcatctgcagatgaagccgagcatggtttggcagctgcagagtacccctggccgc 377
           | || |||||||| |||||||| |||||||| |||| |||  || | || |||||||| |
Sbjct: 170 caattgcatctgctgatgaagcggagcatgggttggaagccccacactatccctggccac 229

                                              
Query: 378 atgctggcatccttagctcttacgatcacgcatca 412
           ||||||||||||||||||| || ||||| ||||||
Sbjct: 230 atgctggcatccttagctcatatgatcatgcatca 264
to top
>dbj|AK073125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010L17, full
           insert sequence
          Length = 2109

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 ctggactgagagcattggctcttctcggagttggtgcttctggtcttttatgttttggta 317
           ||||| |||||||||||||| |||| ||||||||||||||||| |||||| |||||| ||
Sbjct: 334 ctggattgagagcattggctattctgggagttggtgcttctggccttttaagttttgcta 393

                                                                       
Query: 318 cgatagcatctgcagatgaagccgagcatggtttggcagctgcagagtacccctggccgc 377
           | || |||||||| |||||||| |||||||| |||| |||  || | || |||||||| |
Sbjct: 394 caattgcatctgctgatgaagcggagcatgggttggaagccccacactatccctggccac 453

                                              
Query: 378 atgctggcatccttagctcttacgatcacgcatca 412
           ||||||||||||||||||| || ||||| ||||||
Sbjct: 454 atgctggcatccttagctcatatgatcatgcatca 488
to top
>dbj|AK069403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013M20, full
           insert sequence
          Length = 1379

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                       
Query: 258 ctggactgagagcattggctcttctcggagttggtgcttctggtcttttatgttttggta 317
           ||||| |||||||||||||| |||| ||||||||||||||||| |||||| |||||| ||
Sbjct: 258 ctggattgagagcattggctattctgggagttggtgcttctggccttttaagttttgcta 317

                                                                       
Query: 318 cgatagcatctgcagatgaagccgagcatggtttggcagctgcagagtacccctggccgc 377
           | || |||||||| |||||||| |||||||| |||| |||  || | || |||||||| |
Sbjct: 318 caattgcatctgctgatgaagcggagcatgggttggaagccccacactatccctggccac 377

                                              
Query: 378 atgctggcatccttagctcttacgatcacgcatca 412
           ||||||||||||||||||| || ||||| ||||||
Sbjct: 378 atgctggcatccttagctcatatgatcatgcatca 412
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  139 bits (70), Expect = 8e-30
 Identities = 133/154 (86%)
 Strand = Plus / Plus

                                                                            
Query: 258      ctggactgagagcattggctcttctcggagttggtgcttctggtcttttatgttttggta 317
                ||||| |||||||||||||| |||| ||||||||||||||||| |||||| |||||| ||
Sbjct: 41068724 ctggattgagagcattggctattctgggagttggtgcttctggccttttaagttttgcta 41068783

                                                                            
Query: 318      cgatagcatctgcagatgaagccgagcatggtttggcagctgcagagtacccctggccgc 377
                | || |||||||| |||||||| |||||||| |||| |||  || | || |||||||| |
Sbjct: 41068784 caattgcatctgctgatgaagcggagcatgggttggaagccccacactatccctggccac 41068843

                                                  
Query: 378      atgctggcatccttagctcttacgatcacgcatc 411
                ||||||||||||||||||| || ||||| |||||
Sbjct: 41068844 atgctggcatccttagctcatatgatcatgcatc 41068877
to top
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0492G09
          Length = 142239

 Score =  139 bits (70), Expect = 8e-30
 Identities = 133/154 (86%)
 Strand = Plus / Plus

                                                                          
Query: 258    ctggactgagagcattggctcttctcggagttggtgcttctggtcttttatgttttggta 317
              ||||| |||||||||||||| |||| ||||||||||||||||| |||||| |||||| ||
Sbjct: 105654 ctggattgagagcattggctattctgggagttggtgcttctggccttttaagttttgcta 105713

                                                                          
Query: 318    cgatagcatctgcagatgaagccgagcatggtttggcagctgcagagtacccctggccgc 377
              | || |||||||| |||||||| |||||||| |||| |||  || | || |||||||| |
Sbjct: 105714 caattgcatctgctgatgaagcggagcatgggttggaagccccacactatccctggccac 105773

                                                
Query: 378    atgctggcatccttagctcttacgatcacgcatc 411
              ||||||||||||||||||| || ||||| |||||
Sbjct: 105774 atgctggcatccttagctcatatgatcatgcatc 105807
to top
>dbj|AP001838.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-718B20, complete
              sequences
          Length = 211652

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 60     cctccctcccacccgctccccacctccc 87
              ||||||||||||||||| ||||||||||
Sbjct: 163143 cctccctcccacccgcttcccacctccc 163170
to top
>ref|XM_472861.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 774

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  cccgcgccgccgctcgtcggag 106
           ||||||||||||||||||||||
Sbjct: 47  cccgcgccgccgctcgtcggag 68
to top
>gb|AC125042.4| Mus musculus BAC clone RP23-339G10 from chromosome 9, complete sequence
          Length = 219183

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 60     cctccctcccacccgctcccca 81
              ||||||||||||||||||||||
Sbjct: 165620 cctccctcccacccgctcccca 165641
to top
>gb|AC125318.4| Mus musculus BAC clone RP24-301F13 from chromosome 8, complete sequence
          Length = 152405

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 187   aacttttcagagccagtcttct 208
             ||||||||||||||||||||||
Sbjct: 73898 aacttttcagagccagtcttct 73919
to top
>gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosome 8, complete sequence
          Length = 155270

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 187   aacttttcagagccagtcttct 208
             ||||||||||||||||||||||
Sbjct: 15606 aacttttcagagccagtcttct 15627
to top
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21,
             complete sequence
          Length = 160155

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 85    cccgcgccgccgctcgtcggag 106
             ||||||||||||||||||||||
Sbjct: 89081 cccgcgccgccgctcgtcggag 89060
to top
>gb|AC157513.2| Mus musculus BAC clone RP24-280G4 from chromosome 9, complete sequence
          Length = 177728

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 60    cctccctcccacccgctcccca 81
             ||||||||||||||||||||||
Sbjct: 47507 cctccctcccacccgctcccca 47528
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 85       cccgcgccgccgctcgtcggag 106
                ||||||||||||||||||||||
Sbjct: 23768169 cccgcgccgccgctcgtcggag 23768148



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 50       cctccatccacctccctccc 69
                ||||||||||||||||||||
Sbjct: 33086094 cctccatccacctccctccc 33086075



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 77       ccccacctcccgcgccgccgctcgtcggagcc 108
                |||| ||||||||||||||| ||| |||||||
Sbjct: 23507512 cccctcctcccgcgccgccgatcgccggagcc 23507543
to top
>gb|AC151975.1| Mus musculus BAC clone RP24-423F11 from 8, complete sequence
          Length = 198686

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 187    aacttttcagagccagtcttct 208
              ||||||||||||||||||||||
Sbjct: 164544 aacttttcagagccagtcttct 164565
to top
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete
              sequence
          Length = 227918

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 292    tgcttctggtcttttatgtttt 313
              ||||||||||||||||||||||
Sbjct: 137042 tgcttctggtcttttatgtttt 137063
to top
>ref|NM_197016.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0055P24.5), mRNA
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 79  ccacctcccgcgccgccgctc 99
           |||||||||||||||||||||
Sbjct: 291 ccacctcccgcgccgccgctc 311
to top
>ref|XM_422081.1| PREDICTED: Gallus gallus similar to hypothetical protein MGC10993
            (LOC424232), mRNA
          Length = 2751

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 92   cgccgctcgtcggagccccgcctcg 116
            |||||| ||||||||||||||||||
Sbjct: 1132 cgccgcccgtcggagccccgcctcg 1156
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 86       ccgcgccgccgctcgtcggag 106
                |||||||||||||||||||||
Sbjct: 14995163 ccgcgccgccgctcgtcggag 14995183
to top
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete
             sequence
          Length = 137184

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    ccgcgccgccgctcgtcggag 106
             |||||||||||||||||||||
Sbjct: 47599 ccgcgccgccgctcgtcggag 47579
to top
>emb|AL445286.12| Human DNA sequence from clone RP5-1005L2 on chromosome 20 Contains
            STSs, GSSs and CpG islands, complete sequence
          Length = 11118

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 61   ctccctcccacccgctccccacctc 85
            ||||||||||||| |||||||||||
Sbjct: 9059 ctccctcccaccccctccccacctc 9083
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 79     ccacctcccgcgccgccgctcgtcggagccccgcctc 115
              |||||| |||||||||||| |||||| || |||||||
Sbjct: 226574 ccacctgccgcgccgccgcccgtcggcgcgccgcctc 226538
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 103     ggagccccgcctcgccgtgcc 123
               |||||||||||||||||||||
Sbjct: 4324329 ggagccccgcctcgccgtgcc 4324349
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 79       ccacctcccgcgccgccgctc 99
                |||||||||||||||||||||
Sbjct: 17425277 ccacctcccgcgccgccgctc 17425257
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 86       ccgcgccgccgctcgtcggag 106
                |||||||||||||||||||||
Sbjct: 14989697 ccgcgccgccgctcgtcggag 14989717
to top
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete
             sequence
          Length = 134058

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 79    ccacctcccgcgccgccgctc 99
             |||||||||||||||||||||
Sbjct: 54272 ccacctcccgcgccgccgctc 54252
to top
>gb|AF117812.1|AF117812 Oryctolagus cuniculus glucose transporter 3 (GLUT3) mRNA, partial cds
          Length = 1396

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 46   tgcgcctccatccacctccctccca 70
            ||||||||| |||||||||||||||
Sbjct: 1206 tgcgcctccttccacctccctccca 1230
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 79       ccacctcccgcgccgccgctc 99
                |||||||||||||||||||||
Sbjct: 17434317 ccacctcccgcgccgccgctc 17434297
to top
>ref|XM_472828.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1758

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 77   ccccacctcccgcgccgccgctcgtcggagcc 108
            |||| ||||||||||||||| ||| |||||||
Sbjct: 1577 cccctcctcccgcgccgccgatcgccggagcc 1608
to top
>gb|AF461092.1| Mus musculus chondroitin sulfate proteoglycan 5-III (Cspg5) mRNA,
            complete cds
          Length = 3864

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 75   ctccccacctcccgcgccgccgct 98
            |||||| |||||||||||||||||
Sbjct: 1650 ctccccgcctcccgcgccgccgct 1627
to top
>gb|AF461090.1| Mus musculus chondroitin sulfate proteoglycan 5-I (Cspg5) mRNA,
            complete cds
          Length = 3783

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 75   ctccccacctcccgcgccgccgct 98
            |||||| |||||||||||||||||
Sbjct: 1650 ctccccgcctcccgcgccgccgct 1627
to top
>gb|AF461089.1| Homo sapiens chondroitin sulfate proteoglycan 5-III (CSPG5) mRNA,
            complete cds
          Length = 4161

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 75   ctccccacctcccgcgccgccgct 98
            |||||| |||||||||||||||||
Sbjct: 1929 ctccccgcctcccgcgccgccgct 1906
to top
>gb|AF461087.1| Homo sapiens chondroitin sulfate proteoglycan 5-I (CSPG5) mRNA,
            complete cds
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 75   ctccccacctcccgcgccgccgct 98
            |||||| |||||||||||||||||
Sbjct: 1929 ctccccgcctcccgcgccgccgct 1906
to top
>gb|AF285607.2| Bos taurus fatty acid synthase (FASN) gene, complete cds
          Length = 19760

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   cctccatccacctccctccc 69
            ||||||||||||||||||||
Sbjct: 1402 cctccatccacctccctccc 1383
to top
>gb|AC131952.1| Homo sapiens BAC clone RP11-617H11 from 4, complete sequence
          Length = 108700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   catccacctccctcccaccc 73
            ||||||||||||||||||||
Sbjct: 5713 catccacctccctcccaccc 5694
to top
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     cccacctcccgcgccgccgc 97
              ||||||||||||||||||||
Sbjct: 232925 cccacctcccgcgccgccgc 232944
to top
>gb|BC054574.1| Danio rerio aminolevulinate, delta-, synthetase 1, mRNA (cDNA clone
           MGC:63935 IMAGE:6791081), complete cds
          Length = 2186

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 tcttctggctcatctctgct 222
           ||||||||||||||||||||
Sbjct: 432 tcttctggctcatctctgct 413
to top
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ctcatctctgctttcttcat 230
             ||||||||||||||||||||
Sbjct: 59026 ctcatctctgctttcttcat 59007
to top
>gb|AC016902.4|AC016902 Homo sapiens BAC clone RP11-217B19 from 11, complete sequence
          Length = 184841

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cacctccctcccacccgctc 77
             ||||||||||||||||||||
Sbjct: 37031 cacctccctcccacccgctc 37012
to top
>gb|AC004847.3|AC004847 Homo sapiens clone RP4-647J21, complete sequence
          Length = 122280

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    catccacctccctcccaccc 73
             ||||||||||||||||||||
Sbjct: 97540 catccacctccctcccaccc 97559
to top
>gb|AC138466.12| Homo sapiens 12 BAC RP13-977J11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 129492

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   gtcggagccccgcctcgccg 119
             ||||||||||||||||||||
Sbjct: 82745 gtcggagccccgcctcgccg 82726
to top
>gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome 9, complete sequence
          Length = 171391

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    ctccccacctcccgcgccgccgct 98
             |||||| |||||||||||||||||
Sbjct: 12737 ctccccgcctcccgcgccgccgct 12760
to top
>gb|AC112512.6| Homo sapiens 3 BAC RP11-717D12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176910

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     ctccccacctcccgcgccgccgct 98
              |||||| |||||||||||||||||
Sbjct: 115062 ctccccgcctcccgcgccgccgct 115085
to top
>emb|AL731780.6| Mouse DNA sequence from clone RP23-365D10 on chromosome 4, complete
             sequence
          Length = 78870

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tctgaagaaaacttttcaga 197
             ||||||||||||||||||||
Sbjct: 35183 tctgaagaaaacttttcaga 35164
to top
>dbj|BS000123.1| Pan troglodytes chromosome 22 clone:PTB-109N23, map 22, complete
              sequences
          Length = 216200

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     catccacctccctcccaccc 73
              ||||||||||||||||||||
Sbjct: 124334 catccacctccctcccaccc 124353
to top
>emb|Z80771.1|HS253J14 Human DNA sequence from clone RP1-253J14 on chromosome X, complete
             sequence
          Length = 82225

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    catccacctccctcccaccc 73
             ||||||||||||||||||||
Sbjct: 57627 catccacctccctcccaccc 57646
to top
>emb|BX571946.9| Zebrafish DNA sequence from clone DKEY-232H18 in linkage group 22,
              complete sequence
          Length = 179796

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     cacaaagcctgcgcctccat 56
              ||||||||||||||||||||
Sbjct: 103552 cacaaagcctgcgcctccat 103533
to top
>emb|BX649427.7| Zebrafish DNA sequence from clone DKEYP-85D7 in linkage group 22,
             complete sequence
          Length = 45587

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    cacaaagcctgcgcctccat 56
             ||||||||||||||||||||
Sbjct: 36445 cacaaagcctgcgcctccat 36464
to top
>emb|AL732335.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0721B11, complete
             sequence
          Length = 43586

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cctccatccacctccctccc 69
             ||||||||||||||||||||
Sbjct: 11595 cctccatccacctccctccc 11576
to top
>dbj|AP003100.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-27G22, complete
              sequence
          Length = 200276

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     cacctccctcccacccgctc 77
              ||||||||||||||||||||
Sbjct: 190882 cacctccctcccacccgctc 190863
to top
>dbj|AP001729.1| Homo sapiens genomic DNA, chromosome 21q, section 73/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     catccacctccctcccaccc 73
              ||||||||||||||||||||
Sbjct: 127793 catccacctccctcccaccc 127812
to top
>emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21,
             complete sequence
          Length = 140626

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cctccatccacctccctccc 69
             ||||||||||||||||||||
Sbjct: 95675 cctccatccacctccctccc 95656
to top
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
             complete sequence
          Length = 139298

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 77    ccccacctcccgcgccgccgctcgtcggagcc 108
             |||| ||||||||||||||| ||| |||||||
Sbjct: 63415 cccctcctcccgcgccgccgatcgccggagcc 63446
to top
>ref|NM_201287.1| Danio rerio aminolevulinate, delta-, synthetase 1 (alas1), mRNA
          Length = 2186

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 tcttctggctcatctctgct 222
           ||||||||||||||||||||
Sbjct: 432 tcttctggctcatctctgct 413
to top
>gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, complete sequence
          Length = 194160

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    ctccccacctcccgcgccgccgct 98
             |||||| |||||||||||||||||
Sbjct: 10612 ctccccgcctcccgcgccgccgct 10635
to top
>dbj|AP000155.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 7/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    catccacctccctcccaccc 73
             ||||||||||||||||||||
Sbjct: 36210 catccacctccctcccaccc 36229
to top
>dbj|AP000013.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 6/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    catccacctccctcccaccc 73
             ||||||||||||||||||||
Sbjct: 71791 catccacctccctcccaccc 71810
to top
>dbj|AP001414.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:D30, LB7T-ERG
            region, complete sequence
          Length = 17740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   catccacctccctcccaccc 73
            ||||||||||||||||||||
Sbjct: 3515 catccacctccctcccaccc 3534


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,943,330
Number of Sequences: 3902068
Number of extensions: 3943330
Number of successful extensions: 87783
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87244
Number of HSP's gapped (non-prelim): 538
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top