>emb|AJ310426.1|HVU310426 Hordeum vulgare mRNA for cathepsin B (cathB gene)
          Length = 1277

 Score =  293 bits (148), Expect = 8e-77
 Identities = 154/156 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggggaggccattccctaggaatcatccagaagggcatcatacagacggtcaacaacca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 151 agggggaggccattccctaggaatcatccagaaaggcatcatacagacggtcaacaacca 210

                                                                       
Query: 61  tcccaacgccggatggtcggctggacacaacccctacctcgccaattacactattgagca 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tcccaacgccggatggacggctggacacaacccctacctcgccaattacactattgagca 270

                                               
Query: 121 atttaagcatatgctgggagtgaaaccaacacctcc 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 271 atttaagcatatgctgggagtgaaaccaacacctcc 306

>emb|X66015.1|TACATHBC T.aestivum mRNA 3 for cathepsin B (2557)
          Length = 491

 Score =  220 bits (111), Expect = 9e-55
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 10  ccattccctaggaatcatccagaagggcatcatacagacggtcaacaaccatcccaacgc 69
           |||||||||||||||||||||||| |  |||||||| |||||||||||||| ||||||||
Sbjct: 189 ccattccctaggaatcatccagaaagatatcatacaaacggtcaacaaccaccccaacgc 248

                                                                       
Query: 70  cggatggtcggctggacacaacccctacctcgccaattacactattgagcaatttaagca 129
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 249 cggatggacggctggacacaacccctacctcgcgaattacactattgagcaatttaagca 308

                                      
Query: 130 tatgctgggagtgaaaccaacacctcc 156
           ||||||||||||||| ||||| |||||
Sbjct: 309 tatgctgggagtgaagccaacgcctcc 335

>emb|X66012.1|TACATHBA T.aestivum mRNA 1 for cathepsin B (2529)
          Length = 1065

 Score =  188 bits (95), Expect = 3e-45
 Identities = 113/119 (94%)
 Strand = Plus / Plus

                                                                       
Query: 38  atcatacagacggtcaacaaccatcccaacgccggatggtcggctggacacaacccctac 97
           |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1   atcatacaaacggtcaacaaccaccccaacgccggatggacggctggacacaacccctac 60

                                                                      
Query: 98  ctcgccaattacactattgagcaatttaagcatatgctgggagtgaaaccaacacctcc 156
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 61  ctcgcgaattacactattgagcaatttaagcatatgctgggagtgaagccaacgcctcc 119

>emb|X66014.1|TACATHBB T.aestivum mRNA 2 for cathepsin B (2077)
          Length = 1216

 Score =  178 bits (90), Expect = 3e-42
 Identities = 132/146 (90%)
 Strand = Plus / Plus

                                                                       
Query: 11  cattccctaggaatcatccagaagggcatcatacagacggtcaacaaccatcccaacgcc 70
           ||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||
Sbjct: 152 cattccctaggaatcatccagaaggacatcattcagacggtcaacaagcatcccaatgcc 211

                                                                       
Query: 71  ggatggtcggctggacacaacccctacctcgccaattacactattgagcaatttaagcat 130
           || ||| |||||||||||||||||||| | || || ||||||||||||||||| ||||||
Sbjct: 212 gggtggacggctggacacaacccctactttgcaaactacactattgagcaattcaagcat 271

                                     
Query: 131 atgctgggagtgaaaccaacacctcc 156
           || ||||||||||| ||||| |||||
Sbjct: 272 atcctgggagtgaagccaacgcctcc 297

>emb|X66013.1|TACATHBG T.aestivum gene for cathepsin B (Al16)
          Length = 4792

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                        
Query: 29   cagaagggcatcatacagacggtcaacaaccatcccaacgccggatggtcggctggacac 88
            ||||||| |||||| |||||||||||||| |||||||| ||||| ||| |||||||||||
Sbjct: 1701 cagaaggacatcattcagacggtcaacaagcatcccaatgccgggtggacggctggacac 1760

                     
Query: 89   aacccctac 97
            |||||||||
Sbjct: 1761 aacccctac 1769



 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                        
Query: 113  attgagcaatttaagcatatgctgggagtgaaaccaacacctcc 156
            ||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 1885 attgagcaattcaagcatatcctgggagtgaagccaacgcctcc 1928



 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 11   cattccctaggaatcatccag 31
            |||||||||||||||||||||
Sbjct: 1592 cattccctaggaatcatccag 1612

>gb|AY112465.1| Zea mays CL31697_1 mRNA sequence
          Length = 1472

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 21   gaatcatccagaagggcatcatacagacggtcaacaaccatccca 65
            ||||||||||| ||| ||||||  |||| ||||||||||||||||
Sbjct: 1139 gaatcatccaggaggacatcatcgagacagtcaacaaccatccca 1095



 Score = 42.1 bits (21), Expect = 0.48
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 113  attgagcaatttaagcatatgctgggagtgaaaccaacacc 153
            |||| |||||||||||| || || |||||||||||| ||||
Sbjct: 1047 attgcgcaatttaagcacatacttggagtgaaaccagcacc 1007

>gb|BT016464.1| Zea mays clone Contig297 mRNA sequence
          Length = 1136

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 118 gcaatttaagcatatgctgggagtgaaaccaacacc 153
           |||||||||||| || || |||||||||||| ||||
Sbjct: 47  gcaatttaagcacatacttggagtgaaaccagcacc 82

>ref|XM_560519.1| Anopheles gambiae str. PEST ENSANGP00000028370
           (ENSANGG00000022283), partial mRNA
          Length = 297

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 108 acactattgagcaatttaag 127
           ||||||||||||||||||||
Sbjct: 167 acactattgagcaatttaag 186

>gb|AC115617.3| Homo sapiens chromosome X clone LL0XNC01-24A4 map p11.23, complete
             sequence
          Length = 39704

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 91    cccctacctcgccaattacacta 113
             |||||||||| ||||||||||||
Sbjct: 21602 cccctacctccccaattacacta 21580

>gb|AC131656.3| Mus musculus BAC clone RP23-233K19 from chromosome 17, complete sequence
          Length = 184763

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 8      ggccattccctaggaatcatcca 30
              ||||||| |||||||||||||||
Sbjct: 148590 ggccattgcctaggaatcatcca 148612

>emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A3 on chromosome 1q41-42.2
             Contains the 5' end of a novel gene (KIAA0792), the LEFTB
             gene for left-right determination, factor B, the PYCR2
             gene for pyrroline-5-carboxylate reductase family, member
             2, the EBAF gene for endometrial bleeding associated
             factor (left-right determination, factor A; transforming
             growth factor beta superfamily), a novel gene, an NADH
             dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa
             (NDUFA3) pseudogene and two CpG islands, complete sequence
          Length = 127736

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    aggaatcatccagaagggc 37
             |||||||||||||||||||
Sbjct: 99382 aggaatcatccagaagggc 99364

>gb|AC079070.6| Homo sapiens chromosome 18, clone RP11-126K15, complete sequence
          Length = 191464

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 106    ttacactattgagcaattt 124
              |||||||||||||||||||
Sbjct: 177726 ttacactattgagcaattt 177708

>gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, complete sequence
          Length = 173602

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   ttacactattgagcaattt 124
             |||||||||||||||||||
Sbjct: 58571 ttacactattgagcaattt 58553

>ref|XM_689293.1| PREDICTED: Danio rerio similar to protein of bilaterial origin like
           (XP376) (LOC566028), mRNA
          Length = 915

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  tcatccagaagggcatcat 42
           |||||||||||||||||||
Sbjct: 589 tcatccagaagggcatcat 571

>dbj|AK116448.1| Ciona intestinalis cDNA, clone:citb040g08, full insert sequence
          Length = 1491

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 105  attacactattgagcaatttaag 127
            |||||| ||||||||||||||||
Sbjct: 1008 attacattattgagcaatttaag 986

>dbj|AK116752.1| Ciona intestinalis cDNA, clone:ciad075f24, full insert sequence
          Length = 1543

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 105  attacactattgagcaatttaag 127
            |||||| ||||||||||||||||
Sbjct: 1011 attacattattgagcaatttaag 989

>dbj|AK116103.1| Ciona intestinalis cDNA, clone:citb009l08, full insert sequence
          Length = 1486

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 105  attacactattgagcaatttaag 127
            |||||| ||||||||||||||||
Sbjct: 1018 attacattattgagcaatttaag 996

>emb|AL683852.17| Mouse DNA sequence from clone RP23-72B15 on chromosome X, complete
             sequence
          Length = 200665

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 12    attccctaggaatcatccagaag 34
             |||||||||||| ||||||||||
Sbjct: 98193 attccctaggaagcatccagaag 98171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 941,171
Number of Sequences: 3902068
Number of extensions: 941171
Number of successful extensions: 62925
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62890
Number of HSP's gapped (non-prelim): 35
length of query: 156
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 134
effective length of database: 17,147,199,772
effective search space: 2297724769448
effective search space used: 2297724769448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)