ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197602.1| Oryza sativa (japonica cultivar-group) putative... 64 9e-08
2gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 64 9e-08
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 64 9e-08
4dbj|AB103350.1| Oryza sativa (japonica cultivar-group) GST mRNA ... 64 9e-08
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 64 9e-08
6gb|AC102259.7| Mus musculus chromosome 3, clone RP24-199C12, com... 40 1.3
7gb|AC159094.4| Mus musculus chromosome 3, clone RP23-277N17, com... 40 1.3
8gb|AC127680.3| Mus musculus BAC clone RP24-159F1 from chromosome... 38 5.3
9emb|CR956627.17| Mouse DNA sequence from clone RP24-402N1 on chr... 38 5.3
10emb|CR974459.7| Mouse DNA sequence from clone RP23-179P23 on chr... 38 5.3
11gb|AC124681.3| Mus musculus BAC clone RP24-261H7 from chromosome... 38 5.3
12gb|AC127688.7| Mus musculus BAC clone RP24-200F13 from chromosom... 38 5.3
13emb|CR628363.12| Mouse DNA sequence from clone RP23-329B21 on ch... 38 5.3
14emb|BX005206.15| Mouse DNA sequence from clone RP23-384P3 on chr... 38 5.3
15emb|CR556702.10| Mouse DNA sequence from clone RP24-370F24 on ch... 38 5.3
16emb|BX571788.8| Mouse DNA sequence from clone RP23-30M5 on chrom... 38 5.3
17emb|BX649235.2| Mouse DNA sequence from clone RP24-85D2 on chrom... 38 5.3
18emb|CR381683.9| Mouse DNA sequence from clone RP24-559I10 on chr... 38 5.3
19emb|BX088531.8| Mouse DNA sequence from clone RP23-106J7 on chro... 38 5.3
20gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Canc... 38 5.3
21emb|BX005197.11| Mouse DNA sequence from clone RP23-216H19 on ch... 38 5.3
22emb|BX842674.4| Mouse DNA sequence from clone RP24-212K8 on chro... 38 5.3
23emb|BX005468.9| Mouse DNA sequence from clone RP23-142E21 on chr... 38 5.3
24emb|BX119993.9| Mouse DNA sequence from clone RP23-13I18 on chro... 38 5.3
25emb|BX004976.7| Zebrafish DNA sequence from clone CH211-276C7, c... 38 5.3
26gb|AC129214.5| Mus musculus BAC clone RP24-426N11 from 16, compl... 38 5.3
27emb|CR974488.16| Mouse DNA sequence from clone RP23-124J3 on chr... 38 5.3
28emb|CR974480.18| Mouse DNA sequence from clone RP23-239B4 on chr... 38 5.3 
>ref|NM_197602.1| Oryza sativa (japonica cultivar-group) putative glutathione
           S-transferase (OSJNBb0015I11.25), mRNA
          Length = 1206

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 85  atgccgggagccgtgaaggtgttcgggtcgcc 116
           ||||||||||||||||||||||||||||||||
Sbjct: 88  atgccgggagccgtgaaggtgttcgggtcgcc 119
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                              
Query: 85     atgccgggagccgtgaaggtgttcgggtcgcc 116
              ||||||||||||||||||||||||||||||||
Sbjct: 115273 atgccgggagccgtgaaggtgttcgggtcgcc 115242
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 85       atgccgggagccgtgaaggtgttcgggtcgcc 116
                ||||||||||||||||||||||||||||||||
Sbjct: 20713821 atgccgggagccgtgaaggtgttcgggtcgcc 20713790
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>dbj|AB103350.1| Oryza sativa (japonica cultivar-group) GST mRNA for glutathione
           S-transferase, complete cd
          Length = 1238

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 85  atgccgggagccgtgaaggtgttcgggtcgcc 116
           ||||||||||||||||||||||||||||||||
Sbjct: 88  atgccgggagccgtgaaggtgttcgggtcgcc 119
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 63.9 bits (32), Expect = 9e-08
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 85       atgccgggagccgtgaaggtgttcgggtcgcc 116
                ||||||||||||||||||||||||||||||||
Sbjct: 20725093 atgccgggagccgtgaaggtgttcgggtcgcc 20725062
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>gb|AC102259.7| Mus musculus chromosome 3, clone RP24-199C12, complete sequence
          Length = 182793

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aactgagcagcagagtagag 65
             ||||||||||||||||||||
Sbjct: 45575 aactgagcagcagagtagag 45556
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>gb|AC159094.4| Mus musculus chromosome 3, clone RP23-277N17, complete sequence
          Length = 192453

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     aactgagcagcagagtagag 65
              ||||||||||||||||||||
Sbjct: 100351 aactgagcagcagagtagag 100370
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>gb|AC127680.3| Mus musculus BAC clone RP24-159F1 from chromosome X, complete sequence
          Length = 199848

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 182970 actgagcagcagagtagag 182952
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>emb|CR956627.17| Mouse DNA sequence from clone RP24-402N1 on chromosome X, complete
              sequence
          Length = 155119

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 148200 actgagcagcagagtagag 148218



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    actgagcagcagagtagag 65
             |||||||||||||||||||
Sbjct: 18867 actgagcagcagagtagag 18885
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>emb|CR974459.7| Mouse DNA sequence from clone RP23-179P23 on chromosome X, complete
              sequence
          Length = 226435

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 124429 actgagcagcagagtagag 124447



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 47   actgagcagcagagtagag 65
            |||||||||||||||||||
Sbjct: 4357 actgagcagcagagtagag 4375
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>gb|AC124681.3| Mus musculus BAC clone RP24-261H7 from chromosome 16, complete sequence
          Length = 173837

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    cagcagagtagagggagtg 71
             |||||||||||||||||||
Sbjct: 36800 cagcagagtagagggagtg 36782
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>gb|AC127688.7| Mus musculus BAC clone RP24-200F13 from chromosome X, complete sequence
          Length = 162832

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 136135 actgagcagcagagtagag 136117



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    actgagcagcagagtagag 65
             |||||||||||||||||||
Sbjct: 56919 actgagcagcagagtagag 56901
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>emb|CR628363.12| Mouse DNA sequence from clone RP23-329B21 on chromosome X, complete
              sequence
          Length = 196122

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 127297 actgagcagcagagtagag 127315



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 47   actgagcagcagagtagag 65
            |||||||||||||||||||
Sbjct: 9623 actgagcagcagagtagag 9641
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>emb|BX005206.15| Mouse DNA sequence from clone RP23-384P3 on chromosome X, complete
              sequence
          Length = 202812

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 174367 actgagcagcagagtagag 174385



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    actgagcagcagagtagag 65
             |||||||||||||||||||
Sbjct: 54287 actgagcagcagagtagag 54305
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>emb|CR556702.10| Mouse DNA sequence from clone RP24-370F24 on chromosome X, complete
             sequence
          Length = 148966

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    actgagcagcagagtagag 65
             |||||||||||||||||||
Sbjct: 59682 actgagcagcagagtagag 59700
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>emb|BX571788.8| Mouse DNA sequence from clone RP23-30M5 on chromosome X, complete
              sequence
          Length = 233695

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 227795 actgagcagcagagtagag 227813



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 105253 actgagcagcagagtagag 105271
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>emb|BX649235.2| Mouse DNA sequence from clone RP24-85D2 on chromosome X, complete
              sequence
          Length = 133621

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 109927 actgagcagcagagtagag 109909
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>emb|CR381683.9| Mouse DNA sequence from clone RP24-559I10 on chromosome X, complete
              sequence
          Length = 150276

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 130053 actgagcagcagagtagag 130035
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>emb|BX088531.8| Mouse DNA sequence from clone RP23-106J7 on chromosome X, complete
              sequence
          Length = 208905

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 101339 actgagcagcagagtagag 101321
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>gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 199523

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    acacatcacccgtcctcca 32
             |||||||||||||||||||
Sbjct: 32825 acacatcacccgtcctcca 32807
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>emb|BX005197.11| Mouse DNA sequence from clone RP23-216H19 on chromosome X, complete
              sequence
          Length = 179460

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 101748 actgagcagcagagtagag 101730



 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    actgagcagcagagtagag 65
             |||||||||||||||||||
Sbjct: 22531 actgagcagcagagtagag 22513
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>emb|BX842674.4| Mouse DNA sequence from clone RP24-212K8 on chromosome X, complete
             sequence
          Length = 50448

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    actgagcagcagagtagag 65
             |||||||||||||||||||
Sbjct: 22326 actgagcagcagagtagag 22344
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>emb|BX005468.9| Mouse DNA sequence from clone RP23-142E21 on chromosome X, complete
              sequence
          Length = 217179

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     actgagcagcagagtagag 65
              |||||||||||||||||||
Sbjct: 122197 actgagcagcagagtagag 122179
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>emb|BX119993.9| Mouse DNA sequence from clone RP23-13I18 on chromosome X, complete
             sequence
          Length = 234697

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 47    actgagcagcagagtagag 65
             |||||||||||||||||||
Sbjct: 96201 actgagcagcagagtagag 96219
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>emb|BX004976.7| Zebrafish DNA sequence from clone CH211-276C7, complete sequence
          Length = 151137

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     atcaacgatcaactgagca 54
              |||||||||||||||||||
Sbjct: 108268 atcaacgatcaactgagca 108286
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>gb|AC129214.5| Mus musculus BAC clone RP24-426N11 from 16, complete sequence
          Length = 191966

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     cagcagagtagagggagtg 71
              |||||||||||||||||||
Sbjct: 171877 cagcagagtagagggagtg 171859
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>emb|CR974488.16| Mouse DNA sequence from clone RP23-124J3 on chromosome X, complete
            sequence
          Length = 86599

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 47   actgagcagcagagtagag 65
            |||||||||||||||||||
Sbjct: 4353 actgagcagcagagtagag 4371
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>emb|CR974480.18| Mouse DNA sequence from clone RP23-239B4 on chromosome X, complete
            sequence
          Length = 103306

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 47   actgagcagcagagtagag 65
            |||||||||||||||||||
Sbjct: 6347 actgagcagcagagtagag 6365


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 536,689
Number of Sequences: 3902068
Number of extensions: 536689
Number of successful extensions: 33238
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33188
Number of HSP's gapped (non-prelim): 50
length of query: 116
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 95
effective length of database: 17,151,101,840
effective search space: 1629354674800
effective search space used: 1629354674800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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