>dbj|AB188835.1| Oryza sativa (japonica cultivar-group) OsSK2 mRNA for shikimate
           kinase 2, complete cds
          Length = 924

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 81/94 (86%)
 Strand = Plus / Plus

                                                                       
Query: 310 cccgctctgctgcctcaagacatccagaggtcatcagagcttgcataactcagttgacga 369
           |||||| | |||||||||| | |||||||| ||  | |||||||||||||||||||| ||
Sbjct: 171 cccgctgtactgcctcaaggcgtccagaggccacgacagcttgcataactcagttgatga 230

                                             
Query: 370 agccctcttgctaaagaggaaagcagaggaagtt 403
           ||||||| || ||||||||||| |||| ||||||
Sbjct: 231 agccctcctgttaaagaggaaatcagaagaagtt 264



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 162 tggcgatgcagtcgcgggcgg 182
           |||||||||||||||||||||
Sbjct: 20  tggcgatgcagtcgcgggcgg 40

>dbj|AK109730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B12, full
            insert sequence
          Length = 1918

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                     
Query: 347  agcttgcataactcagttgacgaagccctcttgctaaagaggaaagcagaggaagtt 403
            |||||||||||||||||||| ||||||||| || ||||||||||| |||| ||||||
Sbjct: 992  agcttgcataactcagttgatgaagccctcctgttaaagaggaaatcagaagaagtt 1048



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 162 tggcgatgcagtcgcgggcgg 182
           |||||||||||||||||||||
Sbjct: 127 tggcgatgcagtcgcgggcgg 147

>dbj|AB188834.1| Oryza sativa (japonica cultivar-group) OsSK1 mRNA for shikimate
           kinase 1, complete cds
          Length = 927

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 350 ttgcataactcagttgacgaagccctcttgctaaagaggaaagcagaggaagtt 403
           ||||||||||| ||||| |||||||||||||||||||| ||| |||| ||||||
Sbjct: 217 ttgcataactcggttgatgaagccctcttgctaaagagaaaatcagaagaagtt 270

>dbj|AK066687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074E04, full
           insert sequence
          Length = 1356

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 350 ttgcataactcagttgacgaagccctcttgctaaagaggaaagcagaggaagtt 403
           ||||||||||| ||||| |||||||||||||||||||| ||| |||| ||||||
Sbjct: 297 ttgcataactcggttgatgaagccctcttgctaaagagaaaatcagaagaagtt 350



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                        
Query: 138 agcaatggaggcggccgcgggaggtggcgatgcagtcgcgggcgg 182
           |||||||||||||| || ||| | ||||| |||||||||||||||
Sbjct: 77  agcaatggaggcgggcgtggg-gctggcgctgcagtcgcgggcgg 120

>gb|BT009529.1| Triticum aestivum clone wr1.pk0122.a3:fis, full insert mRNA
           sequence
          Length = 1061

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 336 gaggtcatcagagcttgcataactcagttgacgaagccctcttgctaaagaggaaagcag 395
           |||||||| ||| |||||||||||| |||||||| ||||||||| | ||||| ||| |||
Sbjct: 108 gaggtcatgagaacttgcataactccgttgacgatgccctcttgttgaagagaaaatcag 167

            
Query: 396 a 396
           |
Sbjct: 168 a 168

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 350      ttgcataactcagttgacgaagccctcttgctaaag 385
                ||||||||||| ||||| ||||||||||||||||||
Sbjct: 31511000 ttgcataactcggttgatgaagccctcttgctaaag 31511035



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                             
Query: 138      agcaatggaggcggccgcgggaggtggcgatgcagtcgcgggcgg 182
                |||||||||||||| || ||| | ||||| |||||||||||||||
Sbjct: 31510265 agcaatggaggcgggcgtggg-gctggcgctgcagtcgcgggcgg 31510308



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 362      gttgacgaagccctcttgctaaag 385
                ||||| ||||||||||||||||||
Sbjct: 13953716 gttgatgaagccctcttgctaaag 13953693

>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0078N11
          Length = 155168

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 350    ttgcataactcagttgacgaagccctcttgctaaag 385
              ||||||||||| ||||| ||||||||||||||||||
Sbjct: 146397 ttgcataactcggttgatgaagccctcttgctaaag 146432



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                           
Query: 138    agcaatggaggcggccgcgggaggtggcgatgcagtcgcgggcgg 182
              |||||||||||||| || ||| | ||||| |||||||||||||||
Sbjct: 145662 agcaatggaggcgggcgtggg-gctggcgctgcagtcgcgggcgg 145705

>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0431B06
          Length = 154796

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 350  ttgcataactcagttgacgaagccctcttgctaaag 385
            ||||||||||| ||||| ||||||||||||||||||
Sbjct: 1560 ttgcataactcggttgatgaagccctcttgctaaag 1595



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                        
Query: 138 agcaatggaggcggccgcgggaggtggcgatgcagtcgcgggcgg 182
           |||||||||||||| || ||| | ||||| |||||||||||||||
Sbjct: 825 agcaatggaggcgggcgtggg-gctggcgctgcagtcgcgggcgg 868

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                      
Query: 347     agcttgcataactcagttgacgaagccctcttgctaaag 385
               |||||||||||||||||||| ||||||||| || |||||
Sbjct: 6507731 agcttgcataactcagttgatgaagccctcctgttaaag 6507693



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 162     tggcgatgcagtcgcgggcgg 182
               |||||||||||||||||||||
Sbjct: 6508595 tggcgatgcagtcgcgggcgg 6508575

>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0690H04
          Length = 137319

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 347   agcttgcataactcagttgacgaagccctcttgctaaag 385
             |||||||||||||||||||| ||||||||| || |||||
Sbjct: 24107 agcttgcataactcagttgatgaagccctcctgttaaag 24069



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   tggcgatgcagtcgcgggcgg 182
             |||||||||||||||||||||
Sbjct: 24971 tggcgatgcagtcgcgggcgg 24951

>gb|AY104682.1| Zea mays PCO108968 mRNA sequence
          Length = 1305

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 330 catccagaggtcatcagagcttgcataactcagttgacgaagccctcttgctaaagagga 389
           ||||| |||||||| | | |||||||||||| ||||||||||| ||| || | ||||| |
Sbjct: 378 catccggaggtcatgaaaacttgcataactccgttgacgaagctctcctgttgaagagaa 437

                         
Query: 390 aagcagaggaagtt 403
           || |||| ||||||
Sbjct: 438 aatcagaagaagtt 451

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 337      aggtcatcagagcttgcataactcagttgacgaagccctcttgctaaag 385
                ||||||| |||  ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 17833618 aggtcatgagacattgcacaactcggttgatgaagccctcttgctaaag 17833666

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 337      aggtcatcagagcttgcataactcagttgacgaagccctcttgctaaag 385
                ||||||| |||  ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 17759937 aggtcatgagacattgcacaactcggttgatgaagccctcttgctaaag 17759985

>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 337   aggtcatcagagcttgcataactcagttgacgaagccctcttgctaaag 385
             ||||||| |||  ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 52816 aggtcatgagacattgcacaactcggttgatgaagccctcttgctaaag 52864

>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 261    gcccggccgccgcgccggtgc 281
              |||||||||||||||||||||
Sbjct: 120318 gcccggccgccgcgccggtgc 120298

>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
             complete sequence
          Length = 123272

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 382   aaagaggaaagcagaggaagt 402
             |||||||||||||||||||||
Sbjct: 86316 aaagaggaaagcagaggaagt 86336

>ref|NM_001000493.1| Rattus norvegicus olfactory receptor 1356 (Olr1356), mRNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 119 atagcagccagcacccagcag 139
           |||||||||||||||||||||
Sbjct: 440 atagcagccagcacccagcag 420

>emb|CR405764.1| Gallus gallus finished cDNA, clone ChEST888b4
          Length = 675

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 208 cgggcgccggagcggggatgg 228
           |||||||||||||||||||||
Sbjct: 199 cgggcgccggagcggggatgg 219

>gb|AY014059.1| Placostylus ambagiosus internal transcribed spacer 2, and 28S
           ribosomal RNA gene, partial sequence
          Length = 864

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 ccggagcggggatggccgggcgcgc 238
           |||| ||||||||||||||||||||
Sbjct: 783 ccggtgcggggatggccgggcgcgc 807

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 382      aaagaggaaagcagaggaagt 402
                |||||||||||||||||||||
Sbjct: 35461513 aaagaggaaagcagaggaagt 35461533

>ref|XM_317558.2| Anopheles gambiae str. PEST ENSANGP00000007226
           (ENSANGG00000005443), partial mRNA
          Length = 15369

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 ggcgatgcagtcgcgggcggt 183
           |||||||||||||||||||||
Sbjct: 27  ggcgatgcagtcgcgggcggt 47

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 261     gcccggccgccgcgccggtgc 281
               |||||||||||||||||||||
Sbjct: 3249794 gcccggccgccgcgccggtgc 3249814

>emb|X89706.1|RNTPCR44P R.norvegicus mRNA for TPCR44 protein
          Length = 472

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 119 atagcagccagcacccagcag 139
           |||||||||||||||||||||
Sbjct: 66  atagcagccagcacccagcag 46

>ref|XM_675570.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7393.2), mRNA
          Length = 558

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 agcagcaatggaggcggccg 154
           ||||||||||||||||||||
Sbjct: 126 agcagcaatggaggcggccg 145

>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete
              sequence
          Length = 202976

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    agcagccagcacccagcagc 140
              ||||||||||||||||||||
Sbjct: 154516 agcagccagcacccagcagc 154535

>emb|AL009181.1|HS212P9 Human DNA sequence from clone RP1-212P9 on chromosome 1p34.1-35
             Contains the OPRD1 gene for opioid receptor delta 1, two
             novel genes, the 5' end of the  EPB41 gene for erythrocyte
             membrane protein band 4.1 (elliptocytosis 1, RH-linked)
             and a CpG island, complete sequence
          Length = 148540

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   aagaggaaagcagaggaagt 402
             ||||||||||||||||||||
Sbjct: 88889 aagaggaaagcagaggaagt 88908

>dbj|AK096650.1| Homo sapiens cDNA FLJ39331 fis, clone OCBBF2016467
          Length = 2920

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 226 tggccgggcgcgcccggggagcct 249
           |||||| |||||||||||||||||
Sbjct: 220 tggccgagcgcgcccggggagcct 197

>gb|AC025287.8| Homo sapiens chromosome 16 clone RP11-490B18, complete sequence
          Length = 194832

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 226    tggccgggcgcgcccggggagcct 249
              |||||| |||||||||||||||||
Sbjct: 161851 tggccgagcgcgcccggggagcct 161828

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 227    ggccgggcgcgcccggggagcctg 250
              ||||||||||||||||||| ||||
Sbjct: 493797 ggccgggcgcgcccggggaacctg 493774

>dbj|AP005770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0065F08
          Length = 144091

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 362    gttgacgaagccctcttgctaaag 385
              ||||| ||||||||||||||||||
Sbjct: 125614 gttgatgaagccctcttgctaaag 125591

>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B05
          Length = 117057

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 362   gttgacgaagccctcttgctaaag 385
             ||||| ||||||||||||||||||
Sbjct: 23354 gttgatgaagccctcttgctaaag 23331

>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7
          Length = 346683

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    acccgctctgctgcctcaag 328
              ||||||||||||||||||||
Sbjct: 208175 acccgctctgctgcctcaag 208194

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 227    ggccgggcgcgcccggggagcctg 250
              ||||||||||||||||||| ||||
Sbjct: 144286 ggccgggcgcgcccggggaacctg 144263

>gb|DQ275159.1| Streptomyces globisporus LndJ (lndJ) gene, complete cds
          Length = 1706

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 ggccgccgcgccggtgctgc 284
           ||||||||||||||||||||
Sbjct: 920 ggccgccgcgccggtgctgc 939

>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence
          Length = 180800

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   agcagccagcacccagcagc 140
             ||||||||||||||||||||
Sbjct: 41176 agcagccagcacccagcagc 41195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,764,727
Number of Sequences: 3902068
Number of extensions: 2764727
Number of successful extensions: 62621
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62224
Number of HSP's gapped (non-prelim): 393
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)