>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
 Frame = +1

Query: 130 NSPFDCLLIDLDDTLYPGNTGIGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTL 309
           N        D+D+ LY  +T I   ++++I  F                      +G  +
Sbjct: 52  NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAI 111

Query: 310 AGLIALGHDVHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQR-KI----LFTNSDRA 471
            GL+   H V+  EY+  V   LP  D++  D  L   L  + Q  KI    LFTN+ + 
Sbjct: 112 RGLVMF-HKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKN 170

Query: 472 HMRRSLERLGLDEALFDGV 528
           H  R L  LG+ + LFDG+
Sbjct: 171 HAIRCLRLLGIAD-LFDGL 188

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
 Frame = +1

Query: 157 DLDDTLYPGNTGIGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIALGHD 336
           D+D+TLY  +T +   +++++  F                      +G ++ GLI     
Sbjct: 58  DIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQI 117

Query: 337 VHPDEYHSYVHGRLPY-DVIAADPQLAAALQSMPQRKI-------LFTNSDRAHMRRSLE 492
               +Y++++   LP  D +  D +L   L ++ ++K+       LFTNS + H  R ++
Sbjct: 118 DDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNHAIRCVK 177

Query: 493 RLGLDEALFDGV 528
            LG+ + LFDG+
Sbjct: 178 ILGIAD-LFDGI 188

>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
 Frame = +1

Query: 148 LLIDLDDTLYPGNTGIGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIAL 327
           +  DLD+ LYP +  I   +   I  F                      +G  + GL+ L
Sbjct: 8   IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGLV-L 66

Query: 328 GHDVHPDEYHSYVHGRLPYD-VIAADPQLAAALQSMPQRKI--LFTNSDRAHMRRSLERL 498
            H++   +Y   V   LP + VI  D  L   L  + ++    +FTN+   H  R L+ L
Sbjct: 67  HHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYL 126

Query: 499 GLDEALFDGV 528
           G+++  FDG+
Sbjct: 127 GIEDC-FDGI 135

>IWS1_CAEEL (Q19375) IWS1-like protein|
          Length = 511

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = +1

Query: 418 ALQSMPQRKILFTNSDRAHMRRSLERLGLDEALFDGVVCFETMNPNLFGEDAKDDDDVDR 597
           A +S  +R ++ +++  A  ++    L  D++  +G    E    NLFG+D+ DDDD DR
Sbjct: 101 AEESANKRALIDSDASDAEGKKRRVMLDSDDSDHEGTSKKEPTTKNLFGDDS-DDDDEDR 159

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 206  SAGPMPVLPGYSVSSRSMRRQSKGELKAMAGELAASEEQE 87
            SAG  P LPGYS SS       +G+ K   G+  AS++ +
Sbjct: 1798 SAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKDASKDDK 1837

>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5|
          Length = 302

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +1

Query: 343 PDEYHSYVHGRLPYDVIAAD-----PQLAAALQSMPQRKILFTNSDRAHMRRSLERLGLD 507
           P++Y S+    +   + A +      ++ AA+++ P  K       +AH R +L++L  D
Sbjct: 215 PEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYD 274

Query: 508 EALFDGVVCFETMNPNLFGEDAKDDDD 588
           E     V     +N    G+D  D+DD
Sbjct: 275 ERKARLVERLNALNSAADGDDDDDEDD 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,210,547
Number of Sequences: 219361
Number of extensions: 840302
Number of successful extensions: 3928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3927
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)