ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57f08 |
|---|---|
| Clone Library Name | barley_pub |
>ARAE_KLEOX (P45598) Arabinose-proton symporter (Arabinose transporter)| Length = 472 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +1 Query: 61 SVFLNILLGVAQRFPGLLLCTFWVRRLQRFFLMMRTRCPSMATLIRSLDILFMTICSL 234 +VFL +LL Q+F G+ + ++ R+ + T +ATL+ L +F T ++ Sbjct: 258 AVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMVATLVVGLTFMFATFIAV 315
>ARAE_ECOLI (P0AE24) Arabinose-proton symporter (Arabinose transporter)| Length = 472 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +1 Query: 61 SVFLNILLGVAQRFPGLLLCTFWVRRLQRFFLMMRTRCPSMATLIRSLDILFMTICSL 234 +VFL +LL Q+F G+ + ++ R+ + T +ATL+ L +F T ++ Sbjct: 258 AVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAV 315
>ARAE_ECO57 (P0AE25) Arabinose-proton symporter (Arabinose transporter)| Length = 472 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +1 Query: 61 SVFLNILLGVAQRFPGLLLCTFWVRRLQRFFLMMRTRCPSMATLIRSLDILFMTICSL 234 +VFL +LL Q+F G+ + ++ R+ + T +ATL+ L +F T ++ Sbjct: 258 AVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAV 315
>ARNT_ECOLI (P76473) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) (Polymyxin resistance protein pmrK) Length = 550 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +1 Query: 46 WYLAVSVFLNIL---LGVAQRFPGLLLCTFWVRRLQRFFL 156 W +S L +L L +AQR P FWV +QRF L Sbjct: 209 WLAVISCVLTVLPWGLAIAQREPNFWHYFFWVEHIQRFAL 248
>PMYT1_HUMAN (Q99640) Membrane-associated tyrosine- and threonine-specific| cdc2-inhibitory kinase (EC 2.7.11.1) (Myt1 kinase) Length = 499 Score = 30.4 bits (67), Expect = 4.1 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 11/53 (20%) Frame = +3 Query: 135 AAAEILPNDEDPMPLNGNPHPLPGHLVHDNLQFAL-----------PPYPALG 260 A A +P + P PL+G P P+P + H F+L PP PA G Sbjct: 7 ALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKG 59
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 543 PVPPPYHPAAD*GPPTREPNPRKRDSTDQSP 451 P PPP P + PP P P++RD+ Q P Sbjct: 80 PPPPPPPPPSPPPPPPPPPPPQRRDAWTQEP 110
>OBP_EHV1V (P84403) Replication origin binding protein (OBP) (Origin binding| protein) Length = 887 Score = 30.4 bits (67), Expect = 4.1 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 12/84 (14%) Frame = -2 Query: 230 LQIVMNKMSRERMRVAIEGHRVLIIRKNLC-----------SRRTQNVHRSRPGNLCATP 84 + I+ + +MRVAIEG + + C + R + PG + ATP Sbjct: 517 INILYTLLESNQMRVAIEGCQFPLTAAGFCDFLQDLRLDAYAARKEIKQLRGPGGIAATP 576 Query: 83 SRIFRKTDTARY-QSVIWEGSKHN 15 + +F D A + Q + G H+ Sbjct: 577 TEVFENDDVAVFIQKYLRPGVAHD 600
>OBP_EHV1B (P28947) Replication origin binding protein (OBP)| Length = 887 Score = 30.4 bits (67), Expect = 4.1 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 12/84 (14%) Frame = -2 Query: 230 LQIVMNKMSRERMRVAIEGHRVLIIRKNLC-----------SRRTQNVHRSRPGNLCATP 84 + I+ + +MRVAIEG + + C + R + PG + ATP Sbjct: 517 INILYTLLESNQMRVAIEGCQFPLTAAGFCDFLQDLRLDAYAARKEIKQLRGPGGIAATP 576 Query: 83 SRIFRKTDTARY-QSVIWEGSKHN 15 + +F D A + Q + G H+ Sbjct: 577 TEVFENDDVAVFIQKYLRPGVAHD 600
>ARNT_SHIFL (Q83KB6) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) Length = 550 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +1 Query: 46 WYLAVSVFLNIL---LGVAQRFPGLLLCTFWVRRLQRFFL 156 W +S L +L L +AQR P FWV +QRF L Sbjct: 209 WLAVISCVLTVLPWGLAIAQREPDFWHYFFWVEHIQRFAL 248
>ARNT_ECOL6 (Q8FFL9) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) Length = 550 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +1 Query: 46 WYLAVSVFLNIL---LGVAQRFPGLLLCTFWVRRLQRFFL 156 W +S L +L L +AQR P FWV +QRF L Sbjct: 209 WLAVISCVLTVLPWGLAIAQREPDFWHYFFWVEHIQRFAL 248
>ARNT_ECO57 (Q8XDZ1) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) Length = 550 Score = 29.6 bits (65), Expect = 7.0 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +1 Query: 46 WYLAVSVFLNIL---LGVAQRFPGLLLCTFWVRRLQRFFL 156 W +S L +L L +AQR P FWV +QRF L Sbjct: 209 WLAVISCVLTVLPWGLTIAQREPDFWHYFFWVEHIQRFAL 248
>CEBPA_BOVIN (O02754) CCAAT/enhancer-binding protein alpha (C/EBP alpha)| Length = 353 Score = 29.6 bits (65), Expect = 7.0 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +3 Query: 135 AAAEILPNDEDPMPLNGNPHPLPGHLVHDNLQFAL 239 A A + P P P N HP P HL +LQF + Sbjct: 172 ALAGLFPYQPPPPPPPPNSHPPPAHLAAPHLQFQI 206
>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid| salivary glycoprotein G1) (Proline-rich protein G1) Length = 309 Score = 29.3 bits (64), Expect = 9.2 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -1 Query: 555 GSEQPVPPPYHPAAD*GPPTREPNPRKRDSTDQSP 451 G +P PP HP GPP +E N +R + P Sbjct: 232 GGNKPRGPPPHPGKPQGPPPQEGNKPQRPPPPRRP 266
>RL3_MYCTU (P60442) 50S ribosomal protein L3| Length = 217 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = -2 Query: 140 SRRTQNVHRSRPGNL--CATPSRIFRKTDTA 54 S Q VHR RPG++ CATP+R+F+ T A Sbjct: 138 SHGAQAVHR-RPGSIGGCATPARVFKGTRMA 167
>RL3_MYCLE (P30762) 50S ribosomal protein L3| Length = 217 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = -2 Query: 140 SRRTQNVHRSRPGNL--CATPSRIFRKTDTA 54 S Q VHR RPG++ CATP+R+F+ T A Sbjct: 138 SHGAQAVHR-RPGSIGGCATPARVFKGTRMA 167
>RL3_MYCBO (P60441) 50S ribosomal protein L3| Length = 217 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Frame = -2 Query: 140 SRRTQNVHRSRPGNL--CATPSRIFRKTDTA 54 S Q VHR RPG++ CATP+R+F+ T A Sbjct: 138 SHGAQAVHR-RPGSIGGCATPARVFKGTRMA 167 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,220,850 Number of Sequences: 219361 Number of extensions: 1527744 Number of successful extensions: 5522 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4819 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5473 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
