Clone Name | bart57e10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1551 Score = 256 bits (129), Expect = 7e-65 Identities = 327/393 (83%) Strand = Plus / Plus Query: 124 ggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccggg 183 |||||||||| | ||||||||||| ||||| |||||| ||| | ||| ||||||||||| Sbjct: 48 ggcgctggcggttctcgcgccggccgcgcgcgggctccgccgagacgacttcccgccggg 107 Query: 184 gttcctcttcggcgccgccacgtcttcataccagatcgagggcgcgtacctggaggacgg 243 |||||||||||||||||| ||||| | |||||||| |||||||| ||| |||| ||| Sbjct: 108 gttcctcttcggcgccgcgacgtccgcttaccagattgagggcgcatacttggacgacaa 167 Query: 244 caagggcctcagcaactgggatgtcttcacccacacgcagtctagggaaatcaacgatgg 303 |||||| |||| ||| |||||||||||||||||||||||| || | |||| ||||| Sbjct: 168 caaggggctcaacaattgggatgtcttcacccacacgcaggctggacgaatctcagatgg 227 Query: 304 acgcaacggggacgtggcggacgaccactaccatcgttacatggaagacgtggagatcat 363 |||||| |||||||| |||||||||||||||||||| |||| |||||| ||||| ||| | Sbjct: 228 acgcaatggggacgtagcggacgaccactaccatcggtacacggaagatgtggatatcct 287 Query: 364 gcataatctgggtgtcaactcttacaggttctccatctcatgggcgagagtcctcccaag 423 |||||| |||||||||| || ||||| ||||| || || ||||||||| | || ||||| Sbjct: 288 gcataacttgggtgtcaattcctacagattctcgatttcgtgggcgagaattctaccaag 347 Query: 424 aggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggctgatcgccgc 483 ||||||||||||||| || || || || | || || ||||||||||| |||||| ||| Sbjct: 348 aggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatcaacgc 407 Query: 484 gctccttgagaaagggatagagccgttcgtgac 516 |||||| ||||||| ||| | || |||||||| Sbjct: 408 actccttcagaaaggcatacaaccattcgtgac 440
>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full insert sequence Length = 1827 Score = 256 bits (129), Expect = 7e-65 Identities = 327/393 (83%) Strand = Plus / Plus Query: 124 ggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccggg 183 |||||||||| | ||||||||||| ||||| |||||| ||| | ||| ||||||||||| Sbjct: 112 ggcgctggcggttctcgcgccggccgcgcgcgggctccgccgagacgacttcccgccggg 171 Query: 184 gttcctcttcggcgccgccacgtcttcataccagatcgagggcgcgtacctggaggacgg 243 |||||||||||||||||| ||||| | |||||||| |||||||| ||| |||| ||| Sbjct: 172 gttcctcttcggcgccgcgacgtccgcttaccagattgagggcgcatacttggacgacaa 231 Query: 244 caagggcctcagcaactgggatgtcttcacccacacgcagtctagggaaatcaacgatgg 303 |||||| |||| ||| |||||||||||||||||||||||| || | |||| ||||| Sbjct: 232 caaggggctcaacaattgggatgtcttcacccacacgcaggctggacgaatctcagatgg 291 Query: 304 acgcaacggggacgtggcggacgaccactaccatcgttacatggaagacgtggagatcat 363 |||||| |||||||| |||||||||||||||||||| |||| |||||| ||||| ||| | Sbjct: 292 acgcaatggggacgtagcggacgaccactaccatcggtacacggaagatgtggatatcct 351 Query: 364 gcataatctgggtgtcaactcttacaggttctccatctcatgggcgagagtcctcccaag 423 |||||| |||||||||| || ||||| ||||| || || ||||||||| | || ||||| Sbjct: 352 gcataacttgggtgtcaattcctacagattctcgatttcgtgggcgagaattctaccaag 411 Query: 424 aggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggctgatcgccgc 483 ||||||||||||||| || || || || | || || ||||||||||| |||||| ||| Sbjct: 412 aggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatcaacgc 471 Query: 484 gctccttgagaaagggatagagccgttcgtgac 516 |||||| ||||||| ||| | || |||||||| Sbjct: 472 actccttcagaaaggcatacaaccattcgtgac 504
>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full insert sequence Length = 2770 Score = 176 bits (89), Expect = 5e-41 Identities = 188/221 (85%) Strand = Plus / Plus Query: 124 ggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccggg 183 |||||||||| | ||||||||||| ||||| |||||| ||| | ||| ||||||||||| Sbjct: 112 ggcgctggcggttctcgcgccggccgcgcgcgggctccgccgagacgacttcccgccggg 171 Query: 184 gttcctcttcggcgccgccacgtcttcataccagatcgagggcgcgtacctggaggacgg 243 |||||||||||||||||| ||||| | |||||||| |||||||| ||| |||| ||| Sbjct: 172 gttcctcttcggcgccgcgacgtccgcttaccagattgagggcgcatacttggacgacaa 231 Query: 244 caagggcctcagcaactgggatgtcttcacccacacgcagtctagggaaatcaacgatgg 303 |||||| |||| ||| |||||||||||||||||||||||| || | |||| ||||| Sbjct: 232 caaggggctcaacaattgggatgtcttcacccacacgcaggctggacgaatctcagatgg 291 Query: 304 acgcaacggggacgtggcggacgaccactaccatcgttaca 344 |||||| |||||||| |||||||||||||||||||| |||| Sbjct: 292 acgcaatggggacgtagcggacgaccactaccatcggtaca 332 Score = 44.1 bits (22), Expect = 0.47 Identities = 76/94 (80%) Strand = Plus / Plus Query: 423 gaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggctgatcgccg 482 |||||||||||||||| || || || || | || || ||||||||||| |||||| || Sbjct: 1635 gaggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatcaacg 1694 Query: 483 cgctccttgagaaagggatagagccgttcgtgac 516 | |||||| ||||||| ||| | || |||||||| Sbjct: 1695 cactccttcagaaaggcatacaaccattcgtgac 1728
>ref|XM_473161.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 129 bits (65), Expect = 1e-26 Identities = 188/229 (82%) Strand = Plus / Plus Query: 303 gacgcaacggggacgtggcggacgaccactaccatcgttacatggaagacgtggagatca 362 ||||||||||||| || ||||| || ||||||||||| |||| |||||| |||||||| Sbjct: 176 gacgcaacggggatgtagcggatgatcactaccatcggtacacggaagatgtggagattc 235 Query: 363 tgcataatctgggtgtcaactcttacaggttctccatctcatgggcgagagtcctcccaa 422 ||||||| |||||||||| || ||||| ||||| || || ||||| ||| | || |||| Sbjct: 236 tgcataacttgggtgtcaattcctacagattctcaatttcgtgggcaagaattctaccaa 295 Query: 423 gaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggctgatcgccg 482 |||| ||| ||||||| || || ||||| | ||||| ||||||||||| ||||||| || Sbjct: 296 gaggtcggtttggaggagttaattcggcaggaatcgccttctacaaccgtctgatcgacg 355 Query: 483 cgctccttgagaaagggatagagccgttcgtgacgctgcaccacttcga 531 ||||||| ||||||| ||| | || |||||||| ||| |||| ||||| Sbjct: 356 cgctcctacagaaaggcatacaaccattcgtgacactgaaccatttcga 404 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 122 gcggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccg 181 |||||||||||| |||||||||| ||||| |||||| ||| | ||| |||||| | Sbjct: 43 gcggcgctggcggctctcgcgccgggcgcgcgcgggctccgccgagacgacttcccggtg 102 Query: 182 gggttcctcttcggcgccgccacgtc 207 |||||||||||||||||||| ||||| Sbjct: 103 gggttcctcttcggcgccgcgacgtc 128
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 124 ggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccggg 183 |||||||||| | ||||||||||| ||||| |||||| ||| | ||| ||||||||||| Sbjct: 11606 ggcgctggcggttctcgcgccggccgcgcgcgggctccgccgagacgacttcccgccggg 11665 Query: 184 gttcctcttcggcgccgccacgtc 207 |||||||||||||||||| ||||| Sbjct: 11666 gttcctcttcggcgccgcgacgtc 11689 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 299 gatggacgcaacggggacgtggcggacgaccactaccatcgttaca 344 ||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 14734 gatggacgcaatggggacgtagcggacgaccactaccatcggtaca 14779 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 214 ccagatcgagggcgcgtacctggaggacggcaagggcctcagcaactgggatgtcttcac 273 |||||| |||||||| ||| |||| ||| |||||| |||| ||| |||||||||||||| Sbjct: 11817 ccagattgagggcgcatacttggacgacaacaaggggctcaacaattgggatgtcttcac 11876 Query: 274 ccacacgcag 283 |||||||||| Sbjct: 11877 ccacacgcag 11886 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 122 gcggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccg 181 |||||||||||| |||||||||| ||||| |||||| ||| | ||| |||||| | Sbjct: 25774 gcggcgctggcggctctcgcgccgggcgcgcgcgggctccgccgagacgacttcccggtg 25833 Query: 182 gggttcctcttcggcgccgccacgtc 207 |||||||||||||||||||| ||||| Sbjct: 25834 gggttcctcttcggcgccgcgacgtc 25859 Score = 50.1 bits (25), Expect = 0.008 Identities = 70/85 (82%) Strand = Plus / Plus Query: 414 tcctcccaagaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggc 473 ||||| || |||| ||| ||||||| || || ||||| | ||||| ||||||||||| | Sbjct: 27224 tcctcgcaggaggtcggtttggaggagttaattcggcaggaatcgccttctacaaccgtc 27283 Query: 474 tgatcgccgcgctccttgagaaagg 498 |||||| ||||||||| ||||||| Sbjct: 27284 tgatcgacgcgctcctacagaaagg 27308 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 303 gacgcaacggggacgtggcggacgaccactaccatcgttaca 344 ||||||||||||| || ||||| || ||||||||||| |||| Sbjct: 26909 gacgcaacggggatgtagcggatgatcactaccatcggtaca 26950 Score = 40.1 bits (20), Expect = 7.4 Identities = 62/76 (81%) Strand = Plus / Plus Query: 423 gaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggctgatcgccg 482 |||||||||||||||| || || || || | || || ||||||||||| |||||| || Sbjct: 16082 gaggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatcaacg 16141 Query: 483 cgctccttgagaaagg 498 | |||||| ||||||| Sbjct: 16142 cactccttcagaaagg 16157
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 124 ggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccggg 183 |||||||||| | ||||||||||| ||||| |||||| ||| | ||| ||||||||||| Sbjct: 118077 ggcgctggcggttctcgcgccggccgcgcgcgggctccgccgagacgacttcccgccggg 118136 Query: 184 gttcctcttcggcgccgccacgtc 207 |||||||||||||||||| ||||| Sbjct: 118137 gttcctcttcggcgccgcgacgtc 118160 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 299 gatggacgcaacggggacgtggcggacgaccactaccatcgttaca 344 ||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 121205 gatggacgcaatggggacgtagcggacgaccactaccatcggtaca 121250 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 214 ccagatcgagggcgcgtacctggaggacggcaagggcctcagcaactgggatgtcttcac 273 |||||| |||||||| ||| |||| ||| |||||| |||| ||| |||||||||||||| Sbjct: 118288 ccagattgagggcgcatacttggacgacaacaaggggctcaacaattgggatgtcttcac 118347 Query: 274 ccacacgcag 283 |||||||||| Sbjct: 118348 ccacacgcag 118357 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 122 gcggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccg 181 |||||||||||| |||||||||| ||||| |||||| ||| | ||| |||||| | Sbjct: 132245 gcggcgctggcggctctcgcgccgggcgcgcgcgggctccgccgagacgacttcccggtg 132304 Query: 182 gggttcctcttcggcgccgccacgtc 207 |||||||||||||||||||| ||||| Sbjct: 132305 gggttcctcttcggcgccgcgacgtc 132330 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 372 tgggtgtcaactcttacaggttctccatctcatgggc 408 ||||||||||||| |||||||||||||| |||||||| Sbjct: 103313 tgggtgtcaactcgtacaggttctccatatcatgggc 103277 Score = 50.1 bits (25), Expect = 0.008 Identities = 70/85 (82%) Strand = Plus / Plus Query: 414 tcctcccaagaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggc 473 ||||| || |||| ||| ||||||| || || ||||| | ||||| ||||||||||| | Sbjct: 133695 tcctcgcaggaggtcggtttggaggagttaattcggcaggaatcgccttctacaaccgtc 133754 Query: 474 tgatcgccgcgctccttgagaaagg 498 |||||| ||||||||| ||||||| Sbjct: 133755 tgatcgacgcgctcctacagaaagg 133779 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 251 ctcagcaactgggatgtcttcac 273 ||||||||||||||||||||||| Sbjct: 103759 ctcagcaactgggatgtcttcac 103737 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 303 gacgcaacggggacgtggcggacgaccactaccatcgttaca 344 ||||||||||||| || ||||| || ||||||||||| |||| Sbjct: 133380 gacgcaacggggatgtagcggatgatcactaccatcggtaca 133421 Score = 40.1 bits (20), Expect = 7.4 Identities = 62/76 (81%) Strand = Plus / Plus Query: 423 gaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggctgatcgccg 482 |||||||||||||||| || || || || | || || ||||||||||| |||||| || Sbjct: 122553 gaggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatcaacg 122612 Query: 483 cgctccttgagaaagg 498 | |||||| ||||||| Sbjct: 122613 cactccttcagaaagg 122628
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 4e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 124 ggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccggg 183 |||||||||| | ||||||||||| ||||| |||||| ||| | ||| ||||||||||| Sbjct: 25631879 ggcgctggcggttctcgcgccggccgcgcgcgggctccgccgagacgacttcccgccggg 25631938 Query: 184 gttcctcttcggcgccgccacgtc 207 |||||||||||||||||| ||||| Sbjct: 25631939 gttcctcttcggcgccgcgacgtc 25631962 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 299 gatggacgcaacggggacgtggcggacgaccactaccatcgttaca 344 ||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 25635007 gatggacgcaatggggacgtagcggacgaccactaccatcggtaca 25635052 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 214 ccagatcgagggcgcgtacctggaggacggcaagggcctcagcaactgggatgtcttcac 273 |||||| |||||||| ||| |||| ||| |||||| |||| ||| |||||||||||||| Sbjct: 25632090 ccagattgagggcgcatacttggacgacaacaaggggctcaacaattgggatgtcttcac 25632149 Query: 274 ccacacgcag 283 |||||||||| Sbjct: 25632150 ccacacgcag 25632159 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 122 gcggcgctggcgatactcgcgccggcggcgcgagggctcgaccgcgccgagttcccgccg 181 |||||||||||| |||||||||| ||||| |||||| ||| | ||| |||||| | Sbjct: 25646047 gcggcgctggcggctctcgcgccgggcgcgcgcgggctccgccgagacgacttcccggtg 25646106 Query: 182 gggttcctcttcggcgccgccacgtc 207 |||||||||||||||||||| ||||| Sbjct: 25646107 gggttcctcttcggcgccgcgacgtc 25646132 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 372 tgggtgtcaactcttacaggttctccatctcatgggc 408 ||||||||||||| |||||||||||||| |||||||| Sbjct: 25617115 tgggtgtcaactcgtacaggttctccatatcatgggc 25617079 Score = 50.1 bits (25), Expect = 0.008 Identities = 70/85 (82%) Strand = Plus / Plus Query: 414 tcctcccaagaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggc 473 ||||| || |||| ||| ||||||| || || ||||| | ||||| ||||||||||| | Sbjct: 25647497 tcctcgcaggaggtcggtttggaggagttaattcggcaggaatcgccttctacaaccgtc 25647556 Query: 474 tgatcgccgcgctccttgagaaagg 498 |||||| ||||||||| ||||||| Sbjct: 25647557 tgatcgacgcgctcctacagaaagg 25647581 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 251 ctcagcaactgggatgtcttcac 273 ||||||||||||||||||||||| Sbjct: 25617561 ctcagcaactgggatgtcttcac 25617539 Score = 44.1 bits (22), Expect = 0.47 Identities = 37/42 (88%) Strand = Plus / Plus Query: 303 gacgcaacggggacgtggcggacgaccactaccatcgttaca 344 ||||||||||||| || ||||| || ||||||||||| |||| Sbjct: 25647182 gacgcaacggggatgtagcggatgatcactaccatcggtaca 25647223 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Minus Query: 386 tacaggttctccatctcatgggcgagagtcctcccaag 423 ||||||||||||||||||||| | ||| |||| ||||| Sbjct: 23726235 tacaggttctccatctcatggacaagaatccttccaag 23726198 Score = 40.1 bits (20), Expect = 7.4 Identities = 62/76 (81%) Strand = Plus / Plus Query: 423 gaggccggcttggaggcgtaaactcggctgcgatcgctttctacaaccggctgatcgccg 482 |||||||||||||||| || || || || | || || ||||||||||| |||||| || Sbjct: 25636355 gaggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatcaacg 25636414 Query: 483 cgctccttgagaaagg 498 | |||||| ||||||| Sbjct: 25636415 cactccttcagaaagg 25636430
>ref|XM_473157.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1551 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 372 tgggtgtcaactcttacaggttctccatctcatgggc 408 ||||||||||||| |||||||||||||| |||||||| Sbjct: 281 tgggtgtcaactcgtacaggttctccatatcatgggc 317 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 251 ctcagcaactgggatgtcttcac 273 ||||||||||||||||||||||| Sbjct: 163 ctcagcaactgggatgtcttcac 185
>dbj|AK067841.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A11, full insert sequence Length = 1962 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 372 tgggtgtcaactcttacaggttctccatctcatgggc 408 ||||||||||||| |||||||||||||| |||||||| Sbjct: 528 tgggtgtcaactcgtacaggttctccatatcatgggc 564 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 251 ctcagcaactgggatgtcttcac 273 ||||||||||||||||||||||| Sbjct: 410 ctcagcaactgggatgtcttcac 432
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 173 ttcccgccggggttcctcttcggcgccgccacgtcttcataccagatcgagggcgcg 229 |||||||| || ||| ||||||||||||| || | || |||||||||||||||||| Sbjct: 212465 ttcccgcccggcttcgtcttcggcgccgcgaccgcctcgtaccagatcgagggcgcg 212521
>gb|AY029505.1| Actinomyces naeslundii beta-glucosidase gene, complete cds Length = 1467 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 213 accagatcgagggcgcgtacctggaggacggcaagggcct 252 |||||||||||||||| ||| ||||||||||||||||| Sbjct: 80 accagatcgagggcgcttacaacgaggacggcaagggcct 119
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 catgctgctggcggcgctggcg 133 |||||||||||||||||||||| Sbjct: 2602117 catgctgctggcggcgctggcg 2602138
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 caaccggctgatcgccgcgctc 487 |||||||||||||||||||||| Sbjct: 3647628 caaccggctgatcgccgcgctc 3647649
>ref|XM_590826.2| PREDICTED: Bos taurus similar to serologically defined colon cancer antigen 3 (LOC513180), mRNA Length = 2016 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 gcgtagcctttctagctgagct 77 |||||||||||||||||||||| Sbjct: 1307 gcgtagcctttctagctgagct 1328
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Minus Query: 167 gccgagttcccgccggggttcctcttcggcgccg 200 ||||| |||||||||| |||| |||||||||||| Sbjct: 75807 gccgacttcccgccggagttcatcttcggcgccg 75774
>gb|BC105395.1| Bos taurus similar to serologically defined colon cancer antigen 3, mRNA (cDNA clone MGC:128414 IMAGE:7958943), complete cds Length = 2189 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 gcgtagcctttctagctgagct 77 |||||||||||||||||||||| Sbjct: 1416 gcgtagcctttctagctgagct 1437
>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence Length = 160155 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Minus Query: 386 tacaggttctccatctcatgggcgagagtcctcccaag 423 ||||||||||||||||||||| | ||| |||| ||||| Sbjct: 47147 tacaggttctccatctcatggacaagaatccttccaag 47110
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Minus Query: 167 gccgagttcccgccggggttcctcttcggcgccg 200 ||||| |||||||||| |||| |||||||||||| Sbjct: 19592732 gccgacttcccgccggagttcatcttcggcgccg 19592699
>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1399_D07, complete sequence Length = 65000 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Minus Query: 167 gccgagttcccgccggggttcctcttcggcgccg 200 ||||| |||||||||| |||| |||||||||||| Sbjct: 2214 gccgacttcccgccggagttcatcttcggcgccg 2181
>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full insert sequence Length = 2096 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 167 gccgagttcccgccggggttcctcttcggcgccg 200 ||||| |||||||||| |||| |||||||||||| Sbjct: 328 gccgacttcccgccggagttcatcttcggcgccg 361
>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full insert sequence Length = 2059 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 167 gccgagttcccgccggggttcctcttcggcgccg 200 ||||| |||||||||| |||| |||||||||||| Sbjct: 285 gccgacttcccgccggagttcatcttcggcgccg 318
>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full insert sequence Length = 1993 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 167 gccgagttcccgccggggttcctcttcggcgccg 200 ||||| |||||||||| |||| |||||||||||| Sbjct: 219 gccgacttcccgccggagttcatcttcggcgccg 252
>ref|XM_472853.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1533 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 tacaggttctccatctcatgg 406 ||||||||||||||||||||| Sbjct: 328 tacaggttctccatctcatgg 348
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 gctgctggcggcgctggcgat 135 ||||||||||||||||||||| Sbjct: 116079 gctgctggcggcgctggcgat 116059 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 194 ggcgccgccacgtcttcataccagatcgagggcgcg 229 ||||||||||| || | |||||||||||||||||| Sbjct: 20277 ggcgccgccacctcggcgtaccagatcgagggcgcg 20312
>dbj|AK105375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D10, full insert sequence Length = 1034 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 tacaggttctccatctcatgg 406 ||||||||||||||||||||| Sbjct: 360 tacaggttctccatctcatgg 380
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 caaccggctgatcgccgcgct 486 ||||||||||||||||||||| Sbjct: 157093 caaccggctgatcgccgcgct 157073
>gb|U51222.1|SHU51222 Streptomyces halstedii beta-1,4-endoglucanase (celA2) gene, complete cds, and cellulose binding protein (p40) gene, complete cds Length = 3527 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 113 atgctgctggcggcgctggcgatac 137 |||||||||| |||||||||||||| Sbjct: 971 atgctgctgggggcgctggcgatac 947
>ref|XM_482566.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 518 ctgcaccacttcgatctgccgcac 541 ||||||||||||||||||| |||| Sbjct: 430 ctgcaccacttcgatctgcagcac 407
>gb|DQ216881.1| Taeniopygia guttata clone 0058P0007H10 insulin-like growth factor binding protein 7-like mRNA, complete sequence Length = 997 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgctgctggcggcgctggcg 133 |||||||||||||||||||| Sbjct: 45 tgctgctggcggcgctggcg 64
>gb|DQ216880.1| Taeniopygia guttata clone 0058P0041D07 insulin-like growth factor binding protein 7-like mRNA, complete sequence Length = 1085 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgctgctggcggcgctggcg 133 |||||||||||||||||||| Sbjct: 47 tgctgctggcggcgctggcg 66
>gb|AC009844.7| Drosophila melanogaster clone BACR01L16, complete sequence Length = 168238 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 166785 ctgctggcggcgctggcgat 166766
>gb|AC090900.3| Drosophila melanogaster clone BACR30C07, complete sequence Length = 186286 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 17771 ctgctggcggcgctggcgat 17752
>ref|XM_598768.2| PREDICTED: Bos taurus similar to disks large-associated protein 4 isoform b, transcript variant 1 (LOC520521), mRNA Length = 3366 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cctggaggacggcaagggcc 251 |||||||||||||||||||| Sbjct: 519 cctggaggacggcaagggcc 538
>ref|XM_867857.1| PREDICTED: Bos taurus similar to disks large-associated protein 4 isoform b, transcript variant 2 (LOC520521), mRNA Length = 3375 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cctggaggacggcaagggcc 251 |||||||||||||||||||| Sbjct: 519 cctggaggacggcaagggcc 538
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 catgctgctggcggcgctgg 131 |||||||||||||||||||| Sbjct: 5120657 catgctgctggcggcgctgg 5120638
>ref|XM_534410.2| PREDICTED: Canis familiaris similar to disks large-associated protein 4 isoform b, transcript variant 1 (LOC477219), mRNA Length = 3855 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cctggaggacggcaagggcc 251 |||||||||||||||||||| Sbjct: 519 cctggaggacggcaagggcc 538
>ref|XM_860394.1| PREDICTED: Canis familiaris similar to disks large-associated protein 4 isoform b, transcript variant 4 (LOC477219), mRNA Length = 3846 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cctggaggacggcaagggcc 251 |||||||||||||||||||| Sbjct: 519 cctggaggacggcaagggcc 538
>ref|XM_382415.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02239.1) partial mRNA Length = 1710 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ggaggacggcaagggcctca 254 |||||||||||||||||||| Sbjct: 1002 ggaggacggcaagggcctca 1021
>gb|AY082333.1| Delftia acidovorans xanthine dehydrogenase small subunit (xdhA), xanthine dehydrogenase large subunit (xdhB), putative xanthine/uracil permease (xprA), putative sulfonate binding protein (ssuA), putative sulfonate transporter permease component (ssuC), and putative sulfonate transporter ATP-binding subunit (ssuB) genes, complete cds Length = 9263 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgctgctggcggcgctggcg 133 |||||||||||||||||||| Sbjct: 9199 tgctgctggcggcgctggcg 9218
>emb|CR704445.2|CNS0G6I1 Tetraodon nigroviridis full-length cDNA Length = 665 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tcatgctgctggcggcgctg 130 |||||||||||||||||||| Sbjct: 304 tcatgctgctggcggcgctg 323
>gb|AC152499.17| Medicago truncatula clone mth2-56f20, complete sequence Length = 125561 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 agcaactgggatgtcttcac 273 |||||||||||||||||||| Sbjct: 88667 agcaactgggatgtcttcac 88648
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ggccgcggcggcgggcatgg 110 |||||||||||||||||||| Sbjct: 1235802 ggccgcggcggcgggcatgg 1235783
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 catgctgctggcggcgctgg 131 |||||||||||||||||||| Sbjct: 83122 catgctgctggcggcgctgg 83103
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 catgctgctggcggcgctgg 131 |||||||||||||||||||| Sbjct: 154525 catgctgctggcggcgctgg 154544
>emb|AJ000884.1|PDJ000884 Paracoccus denitrificans, MxaA, MxaC, MxaK, MxaL, MxaD and orf's Length = 5962 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 115 gctgctggcggcgctggcgatactcgcgccggcggc 150 |||| ||| |||||||||||| || ||||||||||| Sbjct: 1322 gctgttggtggcgctggcgatgctggcgccggcggc 1357
>emb|AJ720396.1| Gallus gallus mRNA for hypothetical protein, clone 16o1 Length = 1455 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgctgctggcggcgctggcg 133 |||||||||||||||||||| Sbjct: 47 tgctgctggcggcgctggcg 66
>ref|NM_001006557.2| Gallus gallus selenoprotein T (SELT), mRNA Length = 1462 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgctgctggcggcgctggcg 133 |||||||||||||||||||| Sbjct: 71 tgctgctggcggcgctggcg 90
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgctgctggcggcgctggcg 133 |||||||||||||||||||| Sbjct: 6327736 tgctgctggcggcgctggcg 6327755
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 tcatgctgctggcggcgctg 130 |||||||||||||||||||| Sbjct: 134681 tcatgctgctggcggcgctg 134662
>gb|DQ397554.1| Cenarchaeum symbiosum clone C08F03, complete sequence Length = 36219 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gatcatgcataatctgggtg 377 |||||||||||||||||||| Sbjct: 32641 gatcatgcataatctgggtg 32622
>gb|AY121698.1| Drosophila melanogaster RE70806 full insert cDNA Length = 4715 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 4021 ctgctggcggcgctggcgat 4002
>ref|NM_176175.1| Drosophila melanogaster hibris CG7449-RB, transcript variant B (hbs), mRNA Length = 4738 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 4042 ctgctggcggcgctggcgat 4023
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 gtcatgctgctggcggcgctggcg 133 ||||| |||||||||||||||||| Sbjct: 1416924 gtcattctgctggcggcgctggcg 1416947
>ref|NM_079963.3| Drosophila melanogaster hibris CG7449-RA, transcript variant A (hbs), mRNA Length = 4717 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 4021 ctgctggcggcgctggcgat 4002
>gb|AF210316.2|AF210316 Drosophila melanogaster hibris (hbs) mRNA, complete cds Length = 4726 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 4030 ctgctggcggcgctggcgat 4011
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgctgctggcggcgctggcg 133 |||||||||||||||||||| Sbjct: 3598609 tgctgctggcggcgctggcg 3598628
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 ctgcaccacttcgatctgccgcac 541 ||||||||||||||||||| |||| Sbjct: 21124776 ctgcaccacttcgatctgcagcac 21124799
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tagcctttctagctgagcta 78 |||||||||||||||||||| Sbjct: 2164242 tagcctttctagctgagcta 2164261
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gggcgcgtacctggaggacg 242 |||||||||||||||||||| Sbjct: 2083014 gggcgcgtacctggaggacg 2082995
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0535G04 Length = 154180 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tagcctttctagctgagcta 78 |||||||||||||||||||| Sbjct: 23699 tagcctttctagctgagcta 23718
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 ctgcaccacttcgatctgccgcac 541 ||||||||||||||||||| |||| Sbjct: 95986 ctgcaccacttcgatctgcagcac 96009
>gb|AE003812.4| Drosophila melanogaster chromosome 2R, section 38 of 73 of the complete sequence Length = 255772 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 142628 ctgctggcggcgctggcgat 142609
>gb|AC003765.1|AC003765 Drosophila melanogaster (P1 DS00087 (D157)) DNA sequence, complete sequence Length = 41971 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 19219 ctgctggcggcgctggcgat 19200
>gb|AC152975.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNOa0158O07, complete sequence Length = 40515 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gaaatggccgcggcggcggg 105 |||||||||||||||||||| Sbjct: 36753 gaaatggccgcggcggcggg 36772
>dbj|AB017350.1| Acidiphilium rubrum bchP, bchI, bchD, crtI genes and 2 ORFs, partial and complete cds Length = 4965 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ctgctggcggcgctggcgat 135 |||||||||||||||||||| Sbjct: 2665 ctgctggcggcgctggcgat 2684 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,294,245 Number of Sequences: 3902068 Number of extensions: 3294245 Number of successful extensions: 71619 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69576 Number of HSP's gapped (non-prelim): 2037 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)