ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart57d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
2gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome... 127 4e-26
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 127 4e-26
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 127 4e-26
7emb|BX000500.4|CNS08CDQ Oryza sativa chromosome 12, . BAC OSJNBb... 127 4e-26
8gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.52
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.52
10gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.52
11gb|AC010260.7| Homo sapiens chromosome 5 clone CTC-458I2, comple... 44 0.52
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
13dbj|AK104997.2| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.52
14dbj|AK122069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.52
15ref|XM_479077.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.0
16gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, co... 42 2.0
17gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57B... 42 2.0
18gb|AC090886.1|AC090886 Homo sapiens chromosome 3 clone RP11-320K... 42 2.0
19gb|AC090645.1|AC090645 Homo sapiens chromosome 3 clone RP11-556G... 42 2.0
20gb|AC093495.2| Homo sapiens chromosome 3 clone RP11-434D12 map 3... 42 2.0
21gb|AC090004.2| Homo sapiens chromosome 3 clone RP11-14A10 map 3p... 42 2.0
22dbj|AK071549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
23gb|AY110883.1| Zea mays CL14379_1 mRNA sequence 42 2.0
24gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 42 2.0
25ref|NM_190047.1| Oryza sativa (japonica cultivar-group), predic... 40 8.1
26ref|XM_360794.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.1
27gb|AC130969.4| Rattus norvegicus 2 BAC CH230-105B13 (Children's ... 40 8.1
28gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 40 8.1
29gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 8.1
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
31gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 8.1
32dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
33dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.1
35ref|XM_227475.3| PREDICTED: Rattus norvegicus pogo transposable ... 40 8.1
36gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complet... 40 8.1 
>dbj|AK059932.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B10, full
           insert sequence
          Length = 1089

 Score =  248 bits (125), Expect = 2e-62
 Identities = 335/405 (82%)
 Strand = Plus / Plus

                                                                       
Query: 105 ggagcaccttgtcctagtgcacggtgccggccacggcgcctggtgctggttcaggctcct 164
           ||||||| | ||||| ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 86  ggagcacttcgtccttgtgcatggcgccggccatggcgcctggtgctggttcaggctcct 145

                                                                       
Query: 165 ggccctgctccggggctccggccaccgcgtctcctgtgttgaccttgccggggcagcagg 224
              ||||||||  | |||||||||||| ||||||   || ||||| ||||| || || ||
Sbjct: 146 ccgcctgctccaagactccggccaccgtgtctccgccgtcgacctcgccggcgcggccgg 205

                                                                       
Query: 225 cagccgcgtcgaccccgactctgtccggtcgttcgacgagtacaccgggccgctcgtcga 284
           ||||| |||||| ||| ||   ||||| || |||||||| |||| || ||||||| | ||
Sbjct: 206 cagcctcgtcgatcccaaccacgtccgctccttcgacgactacaacgcgccgctccttga 265

                                                                       
Query: 285 cctcctgtccgcgctgccggagggcgaaaaggtgattttggttgggcatagcgcaggagg 344
           |||| || ||    | ||||  ||||| ||||| |||||| |||| ||||| ||||||||
Sbjct: 266 cctcatggccagcttaccggccggcgacaaggtaattttgattggacatagtgcaggagg 325

                                                                       
Query: 345 gctaagtgtgacccatgcaatgcatttattcagcgacaggattaagcaggcaatcttcat 404
            ||||| ||   ||||||||||||||| ||  | ||||| ||||||||||||||||||||
Sbjct: 326 tctaagcgttgtccatgcaatgcatttgtttggggacagaattaagcaggcaatcttcat 385

                                                                       
Query: 405 agcagcaaccatgctcccatttggctaccaaacggaacaagacatcaaagatggcgtacc 464
            |||||||||||||| |  || ||||||||||| |||||||||||||||||||| |||||
Sbjct: 386 cgcagcaaccatgcttcagttcggctaccaaactgaacaagacatcaaagatggtgtacc 445

                                                        
Query: 465 tgatttatccgagcttggggacgtgtatgacctagcatttggtct 509
           |||||||||||||| ||| || |||||||||||  ||||||||||
Sbjct: 446 tgatttatccgagcatggagatgtgtatgacctgacatttggtct 490
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>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0004B05, complete sequence
          Length = 121223

 Score =  127 bits (64), Expect = 4e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                         
Query: 314   aggtgattttggttgggcatagcgcaggagggctaagtgtgacccatgcaatgcatttat 373
             |||| |||||| |||| ||||| |||||||| ||||| ||   ||||||||||||||| |
Sbjct: 89914 aggtaattttgattggacatagtgcaggaggtctaagcgttgtccatgcaatgcatttgt 89973

                                                                         
Query: 374   tcagcgacaggattaagcaggcaatcttcatagcagcaaccatgctcccatttggctacc 433
             |  | ||||| |||||||||||||||||||| |||||||||||||| |  || |||||||
Sbjct: 89974 ttggggacagaattaagcaggcaatcttcatcgcagcaaccatgcttcagttcggctacc 90033

                                     
Query: 434   aaacggaacaagacatcaaagatg 457
             |||| |||||||||||||||||||
Sbjct: 90034 aaactgaacaagacatcaaagatg 90057



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 111/132 (84%)
 Strand = Plus / Plus

                                                                         
Query: 105   ggagcaccttgtcctagtgcacggtgccggccacggcgcctggtgctggttcaggctcct 164
             ||||||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 89579 ggagcacttcgtccttgtgcacggcgccggccatggcgcctggtgctggttcaggctcct 89638

                                                                         
Query: 165   ggccctgctccggggctccggccaccgcgtctcctgtgttgaccttgccggggcagcagg 224
                ||||||||  | |||||||||||| ||||||   || ||||| ||||| || || ||
Sbjct: 89639 ccgcctgctccaagactccggccaccgtgtctccgccgtcgacctcgccggcgcggccgg 89698

                         
Query: 225   cagccgcgtcga 236
             ||||| ||||||
Sbjct: 89699 cagcctcgtcga 89710



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 460   gtacctgatttatccgagcttggggacgtgtatgacctagcatttggtct 509
             ||||||||||||||||||  ||| || |||||||||||  ||||||||||
Sbjct: 90145 gtacctgatttatccgagtatggagatgtgtatgacctgacatttggtct 90194
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score =  127 bits (64), Expect = 4e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                          
Query: 314    aggtgattttggttgggcatagcgcaggagggctaagtgtgacccatgcaatgcatttat 373
              |||| |||||| |||| ||||| |||||||| ||||| ||   ||||||||||||||| |
Sbjct: 853425 aggtaattttgattggacatagtgcaggaggtctaagcgttgtccatgcaatgcatttgt 853484

                                                                          
Query: 374    tcagcgacaggattaagcaggcaatcttcatagcagcaaccatgctcccatttggctacc 433
              |  | ||||| |||||||||||||||||||| |||||||||||||| |  || |||||||
Sbjct: 853485 ttggggacagaattaagcaggcaatcttcatcgcagcaaccatgcttcagttcggctacc 853544

                                      
Query: 434    aaacggaacaagacatcaaagatg 457
              |||| |||||||||||||||||||
Sbjct: 853545 aaactgaacaagacatcaaagatg 853568



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 150/184 (81%)
 Strand = Plus / Plus

                                                                          
Query: 105    ggagcaccttgtcctagtgcacggtgccggccacggcgcctggtgctggttcaggctcct 164
              ||||||| | ||||| ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 853090 ggagcacttcgtccttgtgcatggcgccggccatggcgcctggtgctggttcaggctcct 853149

                                                                          
Query: 165    ggccctgctccggggctccggccaccgcgtctcctgtgttgaccttgccggggcagcagg 224
                 ||||||||  | |||||||||||| ||||||   || ||||| ||||| || || ||
Sbjct: 853150 ccgcctgctccaagactccggccaccgtgtctccgccgtcgacctcgccggcgcggccgg 853209

                                                                          
Query: 225    cagccgcgtcgaccccgactctgtccggtcgttcgacgagtacaccgggccgctcgtcga 284
              ||||| |||||| ||| ||   ||||| || |||||||| |||| || ||||||| | ||
Sbjct: 853210 cagcctcgtcgatcccaaccacgtccgctccttcgacgactacaacgcgccgctccttga 853269

                  
Query: 285    cctc 288
              ||||
Sbjct: 853270 cctc 853273



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 460    gtacctgatttatccgagcttggggacgtgtatgacctagcatttggtct 509
              ||||||||||||||||||| ||| || |||||||||||  ||||||||||
Sbjct: 853656 gtacctgatttatccgagcatggagatgtgtatgacctgacatttggtct 853705
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score =  127 bits (64), Expect = 4e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                          
Query: 314    aggtgattttggttgggcatagcgcaggagggctaagtgtgacccatgcaatgcatttat 373
              |||| |||||| |||| ||||| |||||||| ||||| ||   ||||||||||||||| |
Sbjct: 811621 aggtaattttgattggacatagtgcaggaggtctaagcgttgtccatgcaatgcatttgt 811680

                                                                          
Query: 374    tcagcgacaggattaagcaggcaatcttcatagcagcaaccatgctcccatttggctacc 433
              |  | ||||| |||||||||||||||||||| |||||||||||||| |  || |||||||
Sbjct: 811681 ttggggacagaattaagcaggcaatcttcatcgcagcaaccatgcttcagttcggctacc 811740

                                      
Query: 434    aaacggaacaagacatcaaagatg 457
              |||| |||||||||||||||||||
Sbjct: 811741 aaactgaacaagacatcaaagatg 811764



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 111/132 (84%)
 Strand = Plus / Plus

                                                                          
Query: 105    ggagcaccttgtcctagtgcacggtgccggccacggcgcctggtgctggttcaggctcct 164
              ||||||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 811286 ggagcacttcgtccttgtgcacggcgccggccatggcgcctggtgctggttcaggctcct 811345

                                                                          
Query: 165    ggccctgctccggggctccggccaccgcgtctcctgtgttgaccttgccggggcagcagg 224
                 ||||||||  | |||||||||||| ||||||   || ||||| ||||| || || ||
Sbjct: 811346 ccgcctgctccaagactccggccaccgtgtctccgccgtcgacctcgccggcgcggccgg 811405

                          
Query: 225    cagccgcgtcga 236
              ||||| ||||||
Sbjct: 811406 cagcctcgtcga 811417



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 460    gtacctgatttatccgagcttggggacgtgtatgacctagcatttggtct 509
              ||||||||||||||||||  ||| || |||||||||||  ||||||||||
Sbjct: 811852 gtacctgatttatccgagtatggagatgtgtatgacctgacatttggtct 811901
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  127 bits (64), Expect = 4e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                          
Query: 314    aggtgattttggttgggcatagcgcaggagggctaagtgtgacccatgcaatgcatttat 373
              |||| |||||| |||| ||||| |||||||| ||||| ||   ||||||||||||||| |
Sbjct: 811623 aggtaattttgattggacatagtgcaggaggtctaagcgttgtccatgcaatgcatttgt 811682

                                                                          
Query: 374    tcagcgacaggattaagcaggcaatcttcatagcagcaaccatgctcccatttggctacc 433
              |  | ||||| |||||||||||||||||||| |||||||||||||| |  || |||||||
Sbjct: 811683 ttggggacagaattaagcaggcaatcttcatcgcagcaaccatgcttcagttcggctacc 811742

                                      
Query: 434    aaacggaacaagacatcaaagatg 457
              |||| |||||||||||||||||||
Sbjct: 811743 aaactgaacaagacatcaaagatg 811766



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 111/132 (84%)
 Strand = Plus / Plus

                                                                          
Query: 105    ggagcaccttgtcctagtgcacggtgccggccacggcgcctggtgctggttcaggctcct 164
              ||||||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 811288 ggagcacttcgtccttgtgcacggcgccggccatggcgcctggtgctggttcaggctcct 811347

                                                                          
Query: 165    ggccctgctccggggctccggccaccgcgtctcctgtgttgaccttgccggggcagcagg 224
                 ||||||||  | |||||||||||| ||||||   || ||||| ||||| || || ||
Sbjct: 811348 ccgcctgctccaagactccggccaccgtgtctccgccgtcgacctcgccggcgcggccgg 811407

                          
Query: 225    cagccgcgtcga 236
              ||||| ||||||
Sbjct: 811408 cagcctcgtcga 811419



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 460    gtacctgatttatccgagcttggggacgtgtatgacctagcatttggtct 509
              ||||||||||||||||||  ||| || |||||||||||  ||||||||||
Sbjct: 811854 gtacctgatttatccgagtatggagatgtgtatgacctgacatttggtct 811903
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  127 bits (64), Expect = 4e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                          
Query: 314    aggtgattttggttgggcatagcgcaggagggctaagtgtgacccatgcaatgcatttat 373
              |||| |||||| |||| ||||| |||||||| ||||| ||   ||||||||||||||| |
Sbjct: 853425 aggtaattttgattggacatagtgcaggaggtctaagcgttgtccatgcaatgcatttgt 853484

                                                                          
Query: 374    tcagcgacaggattaagcaggcaatcttcatagcagcaaccatgctcccatttggctacc 433
              |  | ||||| |||||||||||||||||||| |||||||||||||| |  || |||||||
Sbjct: 853485 ttggggacagaattaagcaggcaatcttcatcgcagcaaccatgcttcagttcggctacc 853544

                                      
Query: 434    aaacggaacaagacatcaaagatg 457
              |||| |||||||||||||||||||
Sbjct: 853545 aaactgaacaagacatcaaagatg 853568



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 150/184 (81%)
 Strand = Plus / Plus

                                                                          
Query: 105    ggagcaccttgtcctagtgcacggtgccggccacggcgcctggtgctggttcaggctcct 164
              ||||||| | ||||| ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 853090 ggagcacttcgtccttgtgcatggcgccggccatggcgcctggtgctggttcaggctcct 853149

                                                                          
Query: 165    ggccctgctccggggctccggccaccgcgtctcctgtgttgaccttgccggggcagcagg 224
                 ||||||||  | |||||||||||| ||||||   || ||||| ||||| || || ||
Sbjct: 853150 ccgcctgctccaagactccggccaccgtgtctccgccgtcgacctcgccggcgcggccgg 853209

                                                                          
Query: 225    cagccgcgtcgaccccgactctgtccggtcgttcgacgagtacaccgggccgctcgtcga 284
              ||||| |||||| ||| ||   ||||| || |||||||| |||| || ||||||| | ||
Sbjct: 853210 cagcctcgtcgatcccaaccacgtccgctccttcgacgactacaacgcgccgctccttga 853269

                  
Query: 285    cctc 288
              ||||
Sbjct: 853270 cctc 853273



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 460    gtacctgatttatccgagcttggggacgtgtatgacctagcatttggtct 509
              ||||||||||||||||||| ||| || |||||||||||  ||||||||||
Sbjct: 853656 gtacctgatttatccgagcatggagatgtgtatgacctgacatttggtct 853705
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>emb|BX000500.4|CNS08CDQ Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 79383

 Score =  127 bits (64), Expect = 4e-26
 Identities = 124/144 (86%)
 Strand = Plus / Minus

                                                                         
Query: 314   aggtgattttggttgggcatagcgcaggagggctaagtgtgacccatgcaatgcatttat 373
             |||| |||||| |||| ||||| |||||||| ||||| ||   ||||||||||||||| |
Sbjct: 14499 aggtaattttgattggacatagtgcaggaggtctaagcgttgtccatgcaatgcatttgt 14440

                                                                         
Query: 374   tcagcgacaggattaagcaggcaatcttcatagcagcaaccatgctcccatttggctacc 433
             |  | ||||| |||||||||||||||||||| |||||||||||||| |  || |||||||
Sbjct: 14439 ttggggacagaattaagcaggcaatcttcatcgcagcaaccatgcttcagttcggctacc 14380

                                     
Query: 434   aaacggaacaagacatcaaagatg 457
             |||| |||||||||||||||||||
Sbjct: 14379 aaactgaacaagacatcaaagatg 14356



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 150/184 (81%)
 Strand = Plus / Minus

                                                                         
Query: 105   ggagcaccttgtcctagtgcacggtgccggccacggcgcctggtgctggttcaggctcct 164
             ||||||| | ||||| ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 14834 ggagcacttcgtccttgtgcatggcgccggccatggcgcctggtgctggttcaggctcct 14775

                                                                         
Query: 165   ggccctgctccggggctccggccaccgcgtctcctgtgttgaccttgccggggcagcagg 224
                ||||||||  | |||||||||||| ||||||   || ||||| ||||| || || ||
Sbjct: 14774 ccgcctgctccaagactccggccaccgtgtctccgccgtcgacctcgccggcgcggccgg 14715

                                                                         
Query: 225   cagccgcgtcgaccccgactctgtccggtcgttcgacgagtacaccgggccgctcgtcga 284
             ||||| |||||| ||| ||   ||||| || |||||||| |||| || ||||||| | ||
Sbjct: 14714 cagcctcgtcgatcccaaccacgtccgctccttcgacgactacaacgcgccgctccttga 14655

                 
Query: 285   cctc 288
             ||||
Sbjct: 14654 cctc 14651



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 460   gtacctgatttatccgagcttggggacgtgtatgacctagcatttggtct 509
             ||||||||||||||||||| ||| || |||||||||||  ||||||||||
Sbjct: 14268 gtacctgatttatccgagcatggagatgtgtatgacctgacatttggtct 14219
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>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 138   cggcgcctggtgctggttcagg 159
             ||||||||||||||||||||||
Sbjct: 58447 cggcgcctggtgctggttcagg 58426
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 138     cggcgcctggtgctggttcagg 159
               ||||||||||||||||||||||
Sbjct: 1833585 cggcgcctggtgctggttcagg 1833564
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>gb|AC098693.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
           OJ1004C08, complete sequence
          Length = 133090

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 138 cggcgcctggtgctggttcagg 159
           ||||||||||||||||||||||
Sbjct: 777 cggcgcctggtgctggttcagg 798
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>gb|AC010260.7| Homo sapiens chromosome 5 clone CTC-458I2, complete sequence
          Length = 150528

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 201   tgttgaccttgccggggcagca 222
             ||||||||||||||||||||||
Sbjct: 81649 tgttgaccttgccggggcagca 81628
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 138     cggcgcctggtgctggttcagg 159
               ||||||||||||||||||||||
Sbjct: 1833583 cggcgcctggtgctggttcagg 1833562
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>dbj|AK104997.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D10, full
           insert sequence
          Length = 1879

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 138 cggcgcctggtgctggttcagg 159
           ||||||||||||||||||||||
Sbjct: 221 cggcgcctggtgctggttcagg 200
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>dbj|AK122069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117I10, full
           insert sequence
          Length = 1944

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 138 cggcgcctggtgctggttcagg 159
           ||||||||||||||||||||||
Sbjct: 226 cggcgcctggtgctggttcagg 205
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>ref|XM_479077.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1134

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 309 cgaaaaggtgattttggttgg 329
           |||||||||||||||||||||
Sbjct: 312 cgaaaaggtgattttggttgg 332
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>gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, complete sequence
          Length = 191762

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 560    gcatgatcctgtcccagcaaa 580
              |||||||||||||||||||||
Sbjct: 182911 gcatgatcctgtcccagcaaa 182891
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>gb|AC099772.3| Mus Musculus Chromosome 5 RP23-319P12 Strain C57Bl6/J, complete
             sequence
          Length = 190514

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 560   gcatgatcctgtcccagcaaa 580
             |||||||||||||||||||||
Sbjct: 17937 gcatgatcctgtcccagcaaa 17917
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>gb|AC090886.1|AC090886 Homo sapiens chromosome 3 clone RP11-320K24 map 3p, complete sequence
          Length = 168778

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    gggcaaggagcaccttgtcct 119
             |||||||||||||||||||||
Sbjct: 89776 gggcaaggagcaccttgtcct 89756
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>gb|AC090645.1|AC090645 Homo sapiens chromosome 3 clone RP11-556G18 map 3p, complete sequence
          Length = 162869

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    gggcaaggagcaccttgtcct 119
             |||||||||||||||||||||
Sbjct: 80532 gggcaaggagcaccttgtcct 80552
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>gb|AC093495.2| Homo sapiens chromosome 3 clone RP11-434D12 map 3p, complete sequence
          Length = 173066

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     gggcaaggagcaccttgtcct 119
              |||||||||||||||||||||
Sbjct: 142544 gggcaaggagcaccttgtcct 142524
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>gb|AC090004.2| Homo sapiens chromosome 3 clone RP11-14A10 map 3p, complete sequence
          Length = 169596

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    gggcaaggagcaccttgtcct 119
             |||||||||||||||||||||
Sbjct: 27219 gggcaaggagcaccttgtcct 27199
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>dbj|AK071549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105C06, full
           insert sequence
          Length = 1134

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 309 cgaaaaggtgattttggttgg 329
           |||||||||||||||||||||
Sbjct: 312 cgaaaaggtgattttggttgg 332
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>gb|AY110883.1| Zea mays CL14379_1 mRNA sequence
          Length = 886

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 118 ctagtgcacggtgccggccacggcgcctggtgctggt 154
           |||||||||||  || |||||||||| ||||||||||
Sbjct: 876 ctagtgcacggcacctgccacggcgcgtggtgctggt 840
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 498    agcatttggtcttggaataga 518
              |||||||||||||||||||||
Sbjct: 497607 agcatttggtcttggaataga 497627
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>ref|NM_190047.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 792

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 132 cggccacggcgcctggtgctggttcagg 159
           |||||||||||| |||||||||| ||||
Sbjct: 42  cggccacggcgcgtggtgctggtacagg 69
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>ref|XM_360794.1| Magnaporthe grisea 70-15 hypothetical protein (MG03337.4) partial
           mRNA
          Length = 1629

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 160 ctcctggccctgctccggggctccggcc 187
           |||||||||||| |||||||||||||||
Sbjct: 25  ctcctggccctg-tccggggctccggcc 51
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>gb|AC130969.4| Rattus norvegicus 2 BAC CH230-105B13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 238254

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 143    cctggtgctggttcaggctcctgg 166
              |||| |||||||||||||||||||
Sbjct: 207886 cctgatgctggttcaggctcctgg 207909
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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 121  gtgcacggtgccggccacggcgcc 144
            ||||||||| ||||||||||||||
Sbjct: 5363 gtgcacggttccggccacggcgcc 5386
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     gctccggccaccgcgtctcc 198
               ||||||||||||||||||||
Sbjct: 2162640 gctccggccaccgcgtctcc 2162659
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 132      cggccacggcgcctggtgctggttcagg 159
                |||||||||||| |||||||||| ||||
Sbjct: 41000758 cggccacggcgcgtggtgctggtacagg 41000731
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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 351    tgtgacccatgcaatgcatttatt 374
              ||||||||||||||||||| ||||
Sbjct: 102244 tgtgacccatgcaatgcatatatt 102267
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>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492G09
          Length = 142239

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 132   cggccacggcgcctggtgctggttcagg 159
             |||||||||||| |||||||||| ||||
Sbjct: 37688 cggccacggcgcgtggtgctggtacagg 37661
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>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0423A12
          Length = 178649

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 132    cggccacggcgcctggtgctggttcagg 159
              |||||||||||| |||||||||| ||||
Sbjct: 129183 cggccacggcgcgtggtgctggtacagg 129156
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 292     tccgcgctgccggagggcga 311
               ||||||||||||||||||||
Sbjct: 2863691 tccgcgctgccggagggcga 2863710
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>ref|XM_227475.3| PREDICTED: Rattus norvegicus pogo transposable element with ZNF
            domain (predicted) (Pogz_predicted), mRNA
          Length = 4951

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 143  cctggtgctggttcaggctcctgg 166
            |||| |||||||||||||||||||
Sbjct: 3030 cctgatgctggttcaggctcctgg 3007
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>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence
          Length = 197641

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    aggctcctggccctgctccg 176
              ||||||||||||||||||||
Sbjct: 101300 aggctcctggccctgctccg 101319


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,878,657
Number of Sequences: 3902068
Number of extensions: 3878657
Number of successful extensions: 77396
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76921
Number of HSP's gapped (non-prelim): 476
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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