>DEND_HUMAN (O94850) Dendrin|
          Length = 657

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 326 KPSHEKRKSMRAQAREPPGL-RPRPQQKHRLASMTTTCAPVR-RRSAP---TP*PVATSE 162
           K +  KR+      R PPG  RP P+   R+A +    AP+R  R AP    P P A  +
Sbjct: 69  KETERKRRKAGGARRSPPGRPRPEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQ 128

Query: 161 S 159
           S
Sbjct: 129 S 129

>CPB3_CAEJA (Q6E3D2) Cytoplasmic polyadenylation element-binding protein 3|
          Length = 734

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 335 ATRKPSHEKRKSMRAQAREPPGLRPRPQQKHRLASMTTTCAPVRRRSAPTP 183
           +++KP H K+ + R Q  E    +P   +   +A+MT     + +  AP P
Sbjct: 156 SSQKPIHRKQSARRLQFTEKENPQPDAARNKVVAAMTREYEKLSKECAPVP 206

>TRX_DROVI (Q24742) Protein trithorax|
          Length = 3828

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 266 RPRPQQKHRLASMTTTCAPVRRRSAPT 186
           +P+P+    LA++   C P RRRSA T
Sbjct: 618 KPKPKNYFGLATLPAKCTPRRRRSAAT 644

>VE2_HPV36 (P50809) Regulatory protein E2|
          Length = 509

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = -1

Query: 332 TRKPSHEKRKSMRAQAREPPGLRPRPQQKHRLASMTTTCAPVRRRS-APTP*PVATSES* 156
           + +P   + K  R   R P     RPQ K R +      +  R RS + +  P   S + 
Sbjct: 236 SEQPQQTETKG-RKYGRRPSSRTRRPQAKQRRSRSRHRSSRSRSRSQSRSHTPTTRSATT 294

Query: 155 TQ*SYSLARSGVTVALLRRCSAATASPKAMRLRSRA 48
              S SLA++GV     R  S +T+     R RSR+
Sbjct: 295 RSRSPSLAKTGVQRVSTRSRSRSTSRRGGRRRRSRS 330

>NAS1_HORVU (Q9ZQV9) Nicotianamine synthase 1 (EC 2.5.1.43)|
           (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-
           adenosyl-methionine 3-amino-3-carboxypropyltransferase
           1) (HvNAS1)
          Length = 327

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/82 (28%), Positives = 31/82 (37%)
 Frame = -1

Query: 314 EKRKSMRAQAREPPGLRPRPQQKHRLASMTTTCAPVRRRSAPTP*PVATSES*TQ*SYSL 135
           EK   ++A   E P L P P+       + T C P      P+P  V           S 
Sbjct: 12  EKIAGIQAAIAELPSLSPSPEVDRLFTDLVTACVP------PSPVDVT--------KLSP 57

Query: 134 ARSGVTVALLRRCSAATASPKA 69
               +  AL+R CSAA    +A
Sbjct: 58  EHQRMREALIRLCSAAEGKLEA 79

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 332 TRKPSHEK-RKSMRAQAREPPGLRPRPQQKHRLASMTTTCAPVRRRS 195
           +R PSH + R+  R+++R  P  R RP  + R         P  RRS
Sbjct: 291 SRSPSHSRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRS 337



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -1

Query: 332 TRKPSHEKRKSMRAQAREPPGLRPRPQQK-----HRLASMTTTCAPVRRRSAPTP*P 177
           +R P   K +S   + R  P  R R +       HR  S + T AP ++ + P P P
Sbjct: 168 SRSPRRRKSRSPSPRRRSSPIRRERKRSHSRSPHHRTKSRSATPAPEKKEATPEPEP 224

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -1

Query: 296 RAQAREPPGLRPRPQQKHRLASMTTTCAPVRRRSAPTP*PVA 171
           R  +R PP     P  +HR A       PVR+   PTP PVA
Sbjct: 126 RRHSRSPPLRGQPPPPRHRDAG--GDYRPVRKERTPTPPPVA 165

>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21|
          Length = 2189

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 338 AATRKPSHEKRKSMRA--QAREPPGLRPRPQQKHRLASMTTTCAPVRRRSAPT 186
           A T + SH   +S  A  +   PPGL       HRL S++T     RR+S PT
Sbjct: 576 ARTSQSSHPDTESAVADEEGDMPPGLLT-----HRLKSLSTRLRERRRKSVPT 623

>WFDC2_HUMAN (Q14508) WAP four-disulfide core domain protein 2 precursor (Major|
           epididymis-specific protein E4) (Epididymal secretory
           protein E4) (Putative protease inhibitor WAP5)
          Length = 124

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 46  SALLLNLIAFGLAVAAEQRRSKATVTPDLAKEYD---YCVYDSDVA 174
           +ALLL+L+ FG  + +     K  V P+L  + +    CV DS+ A
Sbjct: 11  AALLLSLLLFGFTLVSGTGAEKTGVCPELQADQNCTQECVSDSECA 56

>CH15_DROME (P07185) Chorion protein S15|
          Length = 115

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 76  GLAVAAEQRRSKATVTPDLAKEYDYCVYDSDVATGYGVG 192
           G + AA    S A V P   K+Y    Y+ D A GY +G
Sbjct: 69  GGSAAAAAAASAAAVNPGTYKQYAIPSYELDGARGYEIG 107

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 329 RKPSHEKRKSMRAQAREPPGLR-PRPQQKHRLASMTTTCAPVRRRSAPTP*P 177
           R PS       R     PP  R P P  + R  S      P++RR +P+P P
Sbjct: 559 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPP 610

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 329 RKPSHEKRKSMRAQAREPPGLR-PRPQQKHRLASMTTTCAPVRRRSAPTP*P 177
           R PS       R     PP  R P P  + R  S      P++RR +P+P P
Sbjct: 573 RSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPP 624

>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -1

Query: 278 PPGLRPRPQQKHRLASMTTTCAPVRRRSAPTP*PVA 171
           PP  R R  Q+H  A  T   APVR    P P P A
Sbjct: 728 PPPRRARRSQRHSDARGTPPPAPVRDPPRPQPSPPA 763


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,432,310
Number of Sequences: 219361
Number of extensions: 420715
Number of successful extensions: 1975
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)