Clone Name | bart57d03 |
---|---|
Clone Library Name | barley_pub |
>RISA_AQUAE (O67604) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 207 Score = 83.6 bits (205), Expect = 4e-16 Identities = 48/106 (45%), Positives = 67/106 (63%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTG+VE++G+V+ + L VETK L+ +LGDS++V+G CLTV Sbjct: 1 MFTGLVEDLGKVKNLTLSSKGAK----------LSVETK--LEDVKLGDSVSVNGACLTV 48 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 +D +STLTF V+PETL+ T+LG+ GD VNLERAL R+G Sbjct: 49 --VDIKSSTLTFDVSPETLKRTNLGKLKTGDYVNLERALRVGERLG 92
>RISA_SCHPO (Q9Y7P0) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 208 Score = 79.3 bits (194), Expect = 7e-15 Identities = 45/106 (42%), Positives = 63/106 (59%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTG+VE +G V+ + +++E +LD GDSIAV+GTCLTV Sbjct: 1 MFTGLVEAIGVVKDVQGTIDNGFA---------MKIEAPQILDDCHTGDSIAVNGTCLTV 51 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 D T+ G+APE+LR T+LG+ AGD VNLERA+ ++RMG Sbjct: 52 TDFDRYHFTV--GIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMG 95
>RISA_BACSU (P16440) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 215 Score = 67.0 bits (162), Expect = 4e-11 Identities = 39/106 (36%), Positives = 53/106 (50%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGI+EE G + + L ++ +L+ LGDSIAV+G CLTV Sbjct: 1 MFTGIIEETGTIESMKKAGHAMA----------LTIKCSKILEDVHLGDSIAVNGICLTV 50 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 D + T V PET++ TSL + G VNLERA+ R G Sbjct: 51 T--DFTKNQFTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFG 94 Score = 32.7 bits (73), Expect = 0.80 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 408 LGDSIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 L SI VDG LT+ + T+T + P T+ T E+ G VN+E Sbjct: 134 LKGSITVDGVSLTIFGL--TEDTVTISLIPHTISETIFSEKTIGSKVNIE 181
>RISA_ACTPL (P50854) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 215 Score = 65.1 bits (157), Expect = 1e-10 Identities = 39/106 (36%), Positives = 56/106 (52%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGI+EEVG++ +I + + +L LGD+IAV+G CLTV Sbjct: 1 MFTGIIEEVGKIAQIHKQGEFAV----------VTINATKVLQDVHLGDTIAVNGVCLTV 50 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + +++ T V ETL+ TSLGE + VNLERA+ R G Sbjct: 51 TSF--SSNQFTADVMSETLKRTSLGELKSNSPVNLERAMAANGRFG 94 Score = 36.2 bits (82), Expect = 0.072 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = +3 Query: 417 SIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 SI +DG LTV +DT + + P T++ T+LG + G VNLE Sbjct: 137 SITIDGISLTV--VDTDDESFRVSIIPHTIKETNLGSKKIGSIVNLE 181
>RISA_BACAM (Q44680) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 215 Score = 63.5 bits (153), Expect = 4e-10 Identities = 39/106 (36%), Positives = 52/106 (49%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGIVEE G ++ I L + + +LGDSIAV+G CLTV Sbjct: 1 MFTGIVEETGTIQAIKKTGLSMA----------LTIAASKVTSDVRLGDSIAVNGICLTV 50 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + T V PET++ TSL + G VNLERA++ R G Sbjct: 51 TGFSD--NQFTVDVMPETVKATSLNGLSKGSKVNLERAMSANGRFG 94
>RISA_CHLPN (Q9Z820) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 200 Score = 59.7 bits (143), Expect = 6e-09 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNL-LDGTQLGDSIAVDGTCLT 446 +F+GI++E+G V + L +++ L + GDS+AVDG CLT Sbjct: 1 MFSGIIQELGEV----------CFFEAQGNGLSLGIKSTPLFVTPLVTGDSVAVDGVCLT 50 Query: 447 VAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + + + S + F V PETL CT+LGE+ D VNLE AL +G Sbjct: 51 LTSCNE--SKIFFDVIPETLACTTLGEKRCSDQVNLEAALKMGDSIG 95 Score = 42.7 bits (99), Expect = 8e-04 Identities = 20/46 (43%), Positives = 33/46 (71%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 IA+DG LT+ ++D+ T + G+ PETL+ T+LG++ G+ VN+E Sbjct: 135 IAIDGISLTLVSVDS--DTFSVGLIPETLQRTTLGKKREGERVNIE 178
>RISA_PHOLE (Q01993) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 218 Score = 55.8 bits (133), Expect = 9e-08 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNL-LDGTQLGDSIAVDGTCLT 446 +FTGI+E +G + I + + V T NL + +GDSIA +G CLT Sbjct: 1 MFTGIIESIGNIGAIIRHNED----------LSIVVNTNNLDISDVNIGDSIATNGVCLT 50 Query: 447 VAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 V+ + S T ++ ET + T+ G +VNLE+A+ P +R+G Sbjct: 51 VSKL--LPSGYTADLSLETYKRTAFHSYRIGQEVNLEKAMLPTTRLG 95
>RISA_CHLMU (Q9PJZ1) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 198 Score = 55.8 bits (133), Expect = 9e-08 Identities = 36/106 (33%), Positives = 54/106 (50%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +F+GI++EV RV I +++ + +NL+DG G SIAVDG CLT+ Sbjct: 1 MFSGIIQEVARVDLIHHYGDS----------MEIGIFARNLVDGVP-GSSIAVDGICLTL 49 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + L F V ET+ CT++ G VNLER++ +G Sbjct: 50 --VKREFELLFFDVTEETMACTTIKNYTVGSMVNLERSVRLGDEIG 93 Score = 34.7 bits (78), Expect = 0.21 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 IA+DG LT+A + + V PET TSLG + G VN+E Sbjct: 133 IAIDGISLTIAQV--RGDIFSVSVIPETRARTSLGYKQVGSHVNME 176
>RISA_PHOPO (P51961) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 218 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/106 (33%), Positives = 54/106 (50%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGI+E VG + I V + +T +L D ++GDSIA +G CLTV Sbjct: 1 MFTGIIEAVGNISAITSKGSDFE--------VSVNCDTLDLAD-VKIGDSIATNGICLTV 51 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + A++ ++ ETL T+ G VNLE+A+ P +R G Sbjct: 52 VKL--TANSYVADLSIETLSRTAFNYYKVGQAVNLEKAMLPTTRFG 95
>RISA_SHIFL (P0AFU9) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 213 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/67 (41%), Positives = 43/67 (64%) Frame = +3 Query: 387 NLLDGTQLGDSIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERAL 566 ++LDG + G S+A +G CLTV I+ + ++F + ETLR T+LG+ GD VN+ERA Sbjct: 31 HMLDGLETGASVAHNGCCLTVTEIN--GNHVSFDLMKETLRITNLGDLKVGDWVNVERAA 88 Query: 567 TPASRMG 587 + +G Sbjct: 89 KFSDEIG 95 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 I +DG LTV + + + PETL T+LG++ G VN+E Sbjct: 140 IGIDGISLTVGEV--TPTRFCVHLIPETLERTTLGKKKLGARVNIE 183
>RISA_ECOLI (P0AFU8) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 213 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/67 (41%), Positives = 43/67 (64%) Frame = +3 Query: 387 NLLDGTQLGDSIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERAL 566 ++LDG + G S+A +G CLTV I+ + ++F + ETLR T+LG+ GD VN+ERA Sbjct: 31 HMLDGLETGASVAHNGCCLTVTEIN--GNHVSFDLMKETLRITNLGDLKVGDWVNVERAA 88 Query: 567 TPASRMG 587 + +G Sbjct: 89 KFSDEIG 95 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 I +DG LTV + + + PETL T+LG++ G VN+E Sbjct: 140 IGIDGISLTVGEV--TPTRFCVHLIPETLERTTLGKKKLGARVNIE 183
>RISA_MYCTU (P65327) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 201 Score = 51.6 bits (122), Expect = 2e-06 Identities = 39/106 (36%), Positives = 47/106 (44%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGIVEE G V L + + GDSIAV+G CLTV Sbjct: 1 MFTGIVEERGEV----------TGREALVDAARLTIRGPMVTADAGHGDSIAVNGVCLTV 50 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + T V ETL ++LGE G VNLERA SR+G Sbjct: 51 VDV-LPDGQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLG 95
>RISA_MYCBO (P65328) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 201 Score = 51.6 bits (122), Expect = 2e-06 Identities = 39/106 (36%), Positives = 47/106 (44%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGIVEE G V L + + GDSIAV+G CLTV Sbjct: 1 MFTGIVEERGEV----------TGREALVDAARLTIRGPMVTADAGHGDSIAVNGVCLTV 50 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + T V ETL ++LGE G VNLERA SR+G Sbjct: 51 VDV-LPDGQFTADVMAETLNRSNLGELRPGSRVNLERAAALGSRLG 95
>RISA_YEAST (P38145) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 238 Score = 51.2 bits (121), Expect = 2e-06 Identities = 33/106 (31%), Positives = 51/106 (48%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGIVE +G V + ++L +GDSIAV+G CLTV Sbjct: 1 MFTGIVECMGTVLENNPYDDSESGGQGVSITIG---NAGSILTDCHVGDSIAVNGVCLTV 57 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + + G++PET++ +++ G VNLERA++ R G Sbjct: 58 TEFNN--DSFKVGISPETIKRSNVASWIQGTQVNLERAVSQDVRFG 101
>RISA_BUCBP (Q89AX1) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 212 Score = 48.1 bits (113), Expect = 2e-05 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKN-LLDGTQLGDSIAVDGTCLT 446 +FTGIV +G+V +I EVET N L+ LG SI+ +G CLT Sbjct: 1 MFTGIVRGLGKVVKILKEKKIS----------QWEVETSNELVKNLMLGASISCNGCCLT 50 Query: 447 VAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 V I + + ETLR TSL G +NLER++ +G Sbjct: 51 VRNI--FRTIFCVDIVEETLRSTSLNTIIVGQYINLERSIKFGEEVG 95 Score = 33.1 bits (74), Expect = 0.61 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 + VDG LT+ +I A + + PET+ T++G++ GD VN+E Sbjct: 140 VCVDGISLTIGSIKNNAFCVF--LIPETILRTTIGQKIIGDVVNIE 183
>RISA_BUCAI (P57212) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 208 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/67 (40%), Positives = 39/67 (58%) Frame = +3 Query: 387 NLLDGTQLGDSIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERAL 566 NL +LGDSI+ +G CLTV I+ S + V ETL+ T+LG GD +N+ER++ Sbjct: 31 NLSKNLKLGDSISHNGCCLTVKLINN--SFIICDVIQETLKSTNLGILNIGDSINIERSI 88 Query: 567 TPASRMG 587 +G Sbjct: 89 KYGDEIG 95
>RISA_HAEIN (P45273) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 204 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/61 (40%), Positives = 38/61 (62%) Frame = +3 Query: 405 QLGDSIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRM 584 ++G SIA +G CLTV I+ ++F + ETL+ T+LG GD VN+ERA+ + + Sbjct: 37 EIGASIANNGVCLTVTEIN--GDLVSFDLMQETLKITNLGTVKVGDYVNIERAMQMGTEI 94 Query: 585 G 587 G Sbjct: 95 G 95 Score = 34.3 bits (77), Expect = 0.27 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 +AVDG LT+ + + + PETL+ T +G R GD VN+E Sbjct: 140 VAVDGISLTIGEVRD--TQFCVNLIPETLQRTLMGRRKVGDIVNIE 183
>RISA_BUCAP (Q8KA22) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 208 Score = 45.8 bits (107), Expect = 9e-05 Identities = 34/106 (32%), Positives = 47/106 (44%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +FTGIV + RV I LL ++GDS+A +G CLTV Sbjct: 1 MFTGIVNGIARVVSINKKKNFHTYTVNFSSI---------LLKNLKIGDSVAHNGCCLTV 51 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 I+ + F + T+ T+LG GD VN+ER+L MG Sbjct: 52 KYIN--CPHVVFDIMKITIANTNLGVLNIGDYVNIERSLKYGDEMG 95 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 IA+DG LT+ I + + PETL T++G + G VN+E Sbjct: 140 IAIDGISLTINNI--IKNEFCVSIIPETLSSTTIGFKKIGQLVNIE 183
>RISA_CHLTR (O84410) Riboflavin synthase alpha chain (EC 2.5.1.9)| Length = 199 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/106 (30%), Positives = 51/106 (48%) Frame = +3 Query: 270 LFTGIVEEVGRVRRIXXXXXXXXXXXXXXXXVDLEVETKNLLDGTQLGDSIAVDGTCLTV 449 +F+GI++EV RV I +++ V + L+D G S +VDG CLT+ Sbjct: 1 MFSGIIQEVARVDLIHHLRDS----------MEIGVFARKLIDVVP-GSSFSVDGICLTL 49 Query: 450 AAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASRMG 587 + L F V ET+ T++ + G VNLER++ +G Sbjct: 50 --VKRQYELLFFDVTEETMAWTTIKDYTVGTMVNLERSVRLGDEIG 93 Score = 32.7 bits (73), Expect = 0.80 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +3 Query: 420 IAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLE 557 IA+DG LT+A + + + PET TSLG + G VN+E Sbjct: 133 IAIDGISLTIARVK--GDIFSVSLIPETRARTSLGYKQVGAHVNME 176
>LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B precursor| Length = 709 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -2 Query: 393 GGSLSRPRGQHREPRLPRPQGAWAAGR 313 G +PRG +EP P GAW GR Sbjct: 499 GEEAQQPRGTEKEPPGPTTDGAWGGGR 525
>RNZ_NOCFA (Q5YQ00) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 405 QLGDSIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDV 548 Q S+ VDG +TVA + +F +T C + E AAG D+ Sbjct: 178 QRAGSLLVDGRTVTVAEVSEPRPGQSFAFVMDTRLCPGVAELAAGVDM 225
>GPH_SALTI (Q8Z202) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)| Length = 252 Score = 29.6 bits (65), Expect = 6.7 Identities = 23/56 (41%), Positives = 27/56 (48%) Frame = +3 Query: 414 DSIAVDGTCLTVAAIDTAASTLTFGVAPETLRCTSLGERAAGDDVNLERALTPASR 581 D VD AA+D A L VA E T +G G DV +ERALT AS+ Sbjct: 15 DGTLVDSAPGLAAAVDMALYALELPVAGEERVITWIGN---GADVLMERALTWASQ 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,199,918 Number of Sequences: 219361 Number of extensions: 515537 Number of successful extensions: 2033 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2003 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)