ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57c06 |
|---|---|
| Clone Library Name | barley_pub |
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 31.2 bits (69), Expect = 2.2 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = +2 Query: 116 HRPHRPRHYAQ-PGHLPGRAHVGLGHHRRVEAGRAP*RPAVGDRGPHA 256 HRPH H+ PG PGR G+ RR A RPA HA Sbjct: 2216 HRPHHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVRPARAPALAHA 2263
>HESB1_ANAVT (P46051) Protein hesB, heterocyst| Length = 123 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 262 TESVRSPIADGGPSGSTACLDTTVMPEPDMGASRQ 158 T+ +R + DGG SG +D T P+PD S+Q Sbjct: 28 TKGIRISVKDGGCSGYEYLMDVTSQPQPDDLVSQQ 62
>CCNL1_CHICK (Q5ZJP9) Cyclin-L1| Length = 534 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +2 Query: 101 HDYDGHRPHRPRHYAQPGHLPGRAHVGLGHHRR 199 H Y HR R R Y + H R H G HRR Sbjct: 502 HYYRNHRHERSRSYERASHRYDRDHPGHSRHRR 534
>LOZEN_DROME (Q9W349) Protein lozenge| Length = 826 Score = 30.4 bits (67), Expect = 3.7 Identities = 20/60 (33%), Positives = 24/60 (40%) Frame = +2 Query: 74 STHGSDALRHDYDGHRPHRPRHYAQPGHLPGRAHVGLGHHRRVEAGRAP*RPAVGDRGPH 253 S +GS H + H + P H+A P H P H HH P PA GPH Sbjct: 99 SINGSGGSHHHHHLHHHYSPYHHAHPYHPP---HPHAPHHHHHHHPPYPYPPA----GPH 151
>CNTP1_MOUSE (O54991) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV) Length = 1385 Score = 30.0 bits (66), Expect = 4.8 Identities = 22/62 (35%), Positives = 29/62 (46%) Frame = +2 Query: 65 RSASTHGSDALRHDYDGHRPHRPRHYAQPGHLPGRAHVGLGHHRRVEAGRAP*RPAVGDR 244 RSA+ S L G+ P Y PG++PG + G G+ R+ P RP G R Sbjct: 1019 RSAAREFSHMLSRPVPGYEPGYVPGYDTPGYVPG--YHGPGY--RLPEYPRPGRPVPGYR 1074 Query: 245 GP 250 GP Sbjct: 1075 GP 1076
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 29.6 bits (65), Expect = 6.3 Identities = 23/87 (26%), Positives = 42/87 (48%) Frame = -2 Query: 514 GRRKSLSDRAGATA*WKSTPASLQRMTMRSSGRVTKRPARAGKMASARESDDTSSETREA 335 GR K+ R+G++ S+ + + SSG + + +G +SA +SS +R + Sbjct: 35 GRDKAKKRRSGSSGSSSSSHSRSSSSSSSSSG--SSSGSSSGSSSSASSRSGSSSSSRSS 92 Query: 334 MGTSGAGKKRPFWM*WHDSMGRSETES 254 +S +G P HD+ RS ++S Sbjct: 93 SSSSSSGSPSPSRR-RHDNRRRSRSKS 118
>CNN2_PONPY (Q5RFN6) Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)| Length = 308 Score = 29.6 bits (65), Expect = 6.3 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 10/136 (7%) Frame = -2 Query: 559 MGNRSLVSLVGTSALGRRKSLSD-RAGATA*WKSTPASLQRMTMRSSGRV------TKRP 401 MG S G +A G R+ L D + + SLQ T + + +V T+R Sbjct: 169 MGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRH 228 Query: 400 ARAGKMASARESDDTSSETREAMGTSGAGKKRPFWM*WHDSMGRSETESVRSP---IADG 230 K+ + + D SS + + T GA + + +GR + P +ADG Sbjct: 229 IYDTKLGT--DKCDNSSMSLQMGYTQGANQSGQVF-----GLGRQIYDPKYCPQGTVADG 281 Query: 229 GPSGSTACLDTTVMPE 182 PSG+ C D +PE Sbjct: 282 APSGTGDCPDPGEVPE 297
>CNN2_HUMAN (Q99439) Calponin-2 (Calponin H2, smooth muscle) (Neutral calponin)| Length = 308 Score = 29.6 bits (65), Expect = 6.3 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 10/136 (7%) Frame = -2 Query: 559 MGNRSLVSLVGTSALGRRKSLSD-RAGATA*WKSTPASLQRMTMRSSGRV------TKRP 401 MG S G +A G R+ L D + + SLQ T + + +V T+R Sbjct: 169 MGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRH 228 Query: 400 ARAGKMASARESDDTSSETREAMGTSGAGKKRPFWM*WHDSMGRSETESVRSP---IADG 230 K+ + + D SS + + T GA + + +GR + P +ADG Sbjct: 229 IYDTKLGT--DKCDNSSMSLQMGYTQGANQSGQVF-----GLGRQIYDPKYCPQGTVADG 281 Query: 229 GPSGSTACLDTTVMPE 182 PSG+ C D +PE Sbjct: 282 APSGTGDCPDPGEVPE 297
>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 29.6 bits (65), Expect = 6.3 Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +2 Query: 113 GHRPHRPRHYAQPGHLPGRAHVGLGHHRRVEAGRAP*RPAVGDR---GPHALRLRPAHAV 283 G R HR R+ A PG PGR + HRRV+ RPA G R P A R P V Sbjct: 73 GGRRHRRRNLAHPGADPGR-ELRRVRHRRVQDE----RPAPGHRPCGRPGAGRHLPGMTV 127 Query: 284 V 286 V Sbjct: 128 V 128
>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)| (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar and coiled-body phosphoprotein 1) Length = 699 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/85 (24%), Positives = 38/85 (44%) Frame = -2 Query: 556 GNRSLVSLVGTSALGRRKSLSDRAGATA*WKSTPASLQRMTMRSSGRVTKRPARAGKMAS 377 G + L++ S+ +S S T K + + T +++ + + A G S Sbjct: 412 GGQKLLTRKADSSSSEEESSSSEEEKTK--KMVATTKPKATAKAALSLPAKQAPQGSRDS 469 Query: 376 ARESDDTSSETREAMGTSGAGKKRP 302 + +SD +SSE E + A KK+P Sbjct: 470 SSDSDSSSSEEEEEKTSKSAVKKKP 494
>HESB_ANASP (P18501) Protein hesB| Length = 123 Score = 29.6 bits (65), Expect = 6.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 262 TESVRSPIADGGPSGSTACLDTTVMPEPD 176 T+ +R + DGG SG +D T P+PD Sbjct: 28 TKGIRVSVKDGGCSGYEYLMDVTSQPQPD 56
>CNTP1_RAT (P97846) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (p190) (Paranodin) Length = 1381 Score = 29.3 bits (64), Expect = 8.2 Identities = 22/62 (35%), Positives = 29/62 (46%) Frame = +2 Query: 65 RSASTHGSDALRHDYDGHRPHRPRHYAQPGHLPGRAHVGLGHHRRVEAGRAP*RPAVGDR 244 RSA+ S L G+ P Y PG++PG + G G+ R+ P RP G R Sbjct: 1019 RSAAQEFSHMLSRPVPGYEPGYIPGYDTPGYVPG--YHGPGY--RLPDYPRPGRPVPGYR 1074 Query: 245 GP 250 GP Sbjct: 1075 GP 1076
>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1692 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 448 LQRMTMRSSGR-VTKRPARAGKMASARESDDTSSETREAMGTSGAGKKR 305 +Q M +SGR + K + +G+M + +D + S+T A+GT GAG K+ Sbjct: 1383 MQGRRMGTSGRSIMKSTSVSGEMYTLEHNDGSQSDT--AVGTVGAGGKK 1429
>RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1252 Score = 29.3 bits (64), Expect = 8.2 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 105 TMMDTVPTAPAIMPNQAICLDAPMSGSGITVVSRQAVLPDGPPSAIGDLTL 257 T+ DT P + N C++ S VV+ VL DGP + G+L L Sbjct: 686 TLKDTYPLKKFLRSNSGTCINQTPLCSVGDVVTHGDVLADGPATDKGELAL 736
>CNTP1_HUMAN (P78357) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (p190) Length = 1384 Score = 29.3 bits (64), Expect = 8.2 Identities = 22/62 (35%), Positives = 29/62 (46%) Frame = +2 Query: 65 RSASTHGSDALRHDYDGHRPHRPRHYAQPGHLPGRAHVGLGHHRRVEAGRAP*RPAVGDR 244 RSA+ S L G+ P Y PG++PG + G G+ R+ P RP G R Sbjct: 1018 RSAAREFSHMLSRPVPGYEPGYIPGYDTPGYVPG--YHGPGY--RLPDYPRPGRPVPGYR 1073 Query: 245 GP 250 GP Sbjct: 1074 GP 1075 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,028,653 Number of Sequences: 219361 Number of extensions: 913139 Number of successful extensions: 3419 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3411 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
