ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57c06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190656.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2139 Score = 422 bits (213), Expect = e-115 Identities = 344/387 (88%), Gaps = 3/387 (0%) Strand = Plus / Plus Query: 183 tcgggcatcaccgtcgtgtcgaggcaggccgtgctccctgacggcccgccgtcggcgatc 242 ||||||||||| ||||||||||| |||| ||||| ||| |||||| | |||||| || Sbjct: 97 tcgggcatcacggtcgtgtcgagacaggacgtgcgcccggacggcgct---tcggcggtc 153 Query: 243 ggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatccagaag 302 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 ggggacctcacgctgtccgtctccgacctgcccatgctgtcgtgccactacatccagaag 213 Query: 303 ggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgctgctcgtgtcg 362 |||||||||||||||||||||||||| |||||||| ||||| || ||| ||||| |||| Sbjct: 214 ggcctcttcttccccgcccccgacgtgcccatggcttccctggtttcgttgctcatgtct 273 Query: 363 tcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcgtcaccctcccc 422 ||||| || || |||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct: 274 tcgctgtctcgggcgctcgccatcttcccgaccctcgccggccgccttgtcacgctcccc 333 Query: 423 gacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatcacgccgtggcg 482 || || ||| ||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct: 334 gatgatcgcgtcgtcatccgctgcaacgacgccggcgtcgagttccgccacgccgtcgcg 393 Query: 483 ccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccgaccaggctgacc 542 || ||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| Sbjct: 394 cccaacctgtcgctggatgacttcatcgtgcccgacgccgacgtcccgaccaagctgacc 453 Query: 543 aaggacctgttccccatggaccgcacc 569 ||||||||||||||||||||||||||| Sbjct: 454 aaggacctgttccccatggaccgcacc 480 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 atggctcagatgctctccgcc 101 ||||||||||||||||||||| Sbjct: 1 atggctcagatgctctccgcc 21
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 422 bits (213), Expect = e-115 Identities = 344/387 (88%), Gaps = 3/387 (0%) Strand = Plus / Plus Query: 183 tcgggcatcaccgtcgtgtcgaggcaggccgtgctccctgacggcccgccgtcggcgatc 242 ||||||||||| ||||||||||| |||| ||||| ||| |||||| | |||||| || Sbjct: 36788379 tcgggcatcacggtcgtgtcgagacaggacgtgcgcccggacggcgct---tcggcggtc 36788435 Query: 243 ggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatccagaag 302 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36788436 ggggacctcacgctgtccgtctccgacctgcccatgctgtcgtgccactacatccagaag 36788495 Query: 303 ggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgctgctcgtgtcg 362 |||||||||||||||||||||||||| |||||||| ||||| || ||| ||||| |||| Sbjct: 36788496 ggcctcttcttccccgcccccgacgtgcccatggcttccctggtttcgttgctcatgtct 36788555 Query: 363 tcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcgtcaccctcccc 422 ||||| || || |||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct: 36788556 tcgctgtctcgggcgctcgccatcttcccgaccctcgccggccgccttgtcacgctcccc 36788615 Query: 423 gacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatcacgccgtggcg 482 || || ||| ||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct: 36788616 gatgatcgcgtcgtcatccgctgcaacgacgccggcgtcgagttccgccacgccgtcgcg 36788675 Query: 483 ccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccgaccaggctgacc 542 || ||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| Sbjct: 36788676 cccaacctgtcgctggatgacttcatcgtgcccgacgccgacgtcccgaccaagctgacc 36788735 Query: 543 aaggacctgttccccatggaccgcacc 569 ||||||||||||||||||||||||||| Sbjct: 36788736 aaggacctgttccccatggaccgcacc 36788762 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 7 aggcagcactgcccaaaccacctccttggcct 38 |||||||||||||||||||||||| ||||||| Sbjct: 36788160 aggcagcactgcccaaaccacctctttggcct 36788191 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 catggctcagatgctctccgcc 101 |||||||||||||||||||||| Sbjct: 36788282 catggctcagatgctctccgcc 36788303
>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096A10 Length = 150976 Score = 422 bits (213), Expect = e-115 Identities = 344/387 (88%), Gaps = 3/387 (0%) Strand = Plus / Plus Query: 183 tcgggcatcaccgtcgtgtcgaggcaggccgtgctccctgacggcccgccgtcggcgatc 242 ||||||||||| ||||||||||| |||| ||||| ||| |||||| | |||||| || Sbjct: 3957 tcgggcatcacggtcgtgtcgagacaggacgtgcgcccggacggcgct---tcggcggtc 4013 Query: 243 ggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatccagaag 302 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4014 ggggacctcacgctgtccgtctccgacctgcccatgctgtcgtgccactacatccagaag 4073 Query: 303 ggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgctgctcgtgtcg 362 |||||||||||||||||||||||||| |||||||| ||||| || ||| ||||| |||| Sbjct: 4074 ggcctcttcttccccgcccccgacgtgcccatggcttccctggtttcgttgctcatgtct 4133 Query: 363 tcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcgtcaccctcccc 422 ||||| || || |||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct: 4134 tcgctgtctcgggcgctcgccatcttcccgaccctcgccggccgccttgtcacgctcccc 4193 Query: 423 gacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatcacgccgtggcg 482 || || ||| ||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct: 4194 gatgatcgcgtcgtcatccgctgcaacgacgccggcgtcgagttccgccacgccgtcgcg 4253 Query: 483 ccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccgaccaggctgacc 542 || ||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| Sbjct: 4254 cccaacctgtcgctggatgacttcatcgtgcccgacgccgacgtcccgaccaagctgacc 4313 Query: 543 aaggacctgttccccatggaccgcacc 569 ||||||||||||||||||||||||||| Sbjct: 4314 aaggacctgttccccatggaccgcacc 4340 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 7 aggcagcactgcccaaaccacctccttggcct 38 |||||||||||||||||||||||| ||||||| Sbjct: 3738 aggcagcactgcccaaaccacctctttggcct 3769 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 catggctcagatgctctccgcc 101 |||||||||||||||||||||| Sbjct: 3860 catggctcagatgctctccgcc 3881
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 422 bits (213), Expect = e-115 Identities = 344/387 (88%), Gaps = 3/387 (0%) Strand = Plus / Plus Query: 183 tcgggcatcaccgtcgtgtcgaggcaggccgtgctccctgacggcccgccgtcggcgatc 242 ||||||||||| ||||||||||| |||| ||||| ||| |||||| | |||||| || Sbjct: 114694 tcgggcatcacggtcgtgtcgagacaggacgtgcgcccggacggcgct---tcggcggtc 114750 Query: 243 ggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatccagaag 302 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 114751 ggggacctcacgctgtccgtctccgacctgcccatgctgtcgtgccactacatccagaag 114810 Query: 303 ggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgctgctcgtgtcg 362 |||||||||||||||||||||||||| |||||||| ||||| || ||| ||||| |||| Sbjct: 114811 ggcctcttcttccccgcccccgacgtgcccatggcttccctggtttcgttgctcatgtct 114870 Query: 363 tcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcgtcaccctcccc 422 ||||| || || |||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct: 114871 tcgctgtctcgggcgctcgccatcttcccgaccctcgccggccgccttgtcacgctcccc 114930 Query: 423 gacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatcacgccgtggcg 482 || || ||| ||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct: 114931 gatgatcgcgtcgtcatccgctgcaacgacgccggcgtcgagttccgccacgccgtcgcg 114990 Query: 483 ccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccgaccaggctgacc 542 || ||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| Sbjct: 114991 cccaacctgtcgctggatgacttcatcgtgcccgacgccgacgtcccgaccaagctgacc 115050 Query: 543 aaggacctgttccccatggaccgcacc 569 ||||||||||||||||||||||||||| Sbjct: 115051 aaggacctgttccccatggaccgcacc 115077 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 7 aggcagcactgcccaaaccacctccttggcct 38 |||||||||||||||||||||||| ||||||| Sbjct: 114475 aggcagcactgcccaaaccacctctttggcct 114506 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 catggctcagatgctctccgcc 101 |||||||||||||||||||||| Sbjct: 114597 catggctcagatgctctccgcc 114618
>dbj|AK070440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050J22, full insert sequence Length = 2097 Score = 422 bits (213), Expect = e-115 Identities = 344/387 (88%), Gaps = 3/387 (0%) Strand = Plus / Plus Query: 183 tcgggcatcaccgtcgtgtcgaggcaggccgtgctccctgacggcccgccgtcggcgatc 242 ||||||||||| ||||||||||| |||| ||||| ||| |||||| | |||||| || Sbjct: 232 tcgggcatcacggtcgtgtcgagacaggacgtgcgcccggacggcgct---tcggcggtc 288 Query: 243 ggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatccagaag 302 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ggggacctcacgctgtccgtctccgacctgcccatgctgtcgtgccactacatccagaag 348 Query: 303 ggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgctgctcgtgtcg 362 |||||||||||||||||||||||||| |||||||| ||||| || ||| ||||| |||| Sbjct: 349 ggcctcttcttccccgcccccgacgtgcccatggcttccctggtttcgttgctcatgtct 408 Query: 363 tcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcgtcaccctcccc 422 ||||| || || |||||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct: 409 tcgctgtctcgggcgctcgccatcttcccgaccctcgccggccgccttgtcacgctcccc 468 Query: 423 gacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatcacgccgtggcg 482 || || ||| ||||||||||||||||||||||||||||||| |||| |||||||| ||| Sbjct: 469 gatgatcgcgtcgtcatccgctgcaacgacgccggcgtcgagttccgccacgccgtcgcg 528 Query: 483 ccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccgaccaggctgacc 542 || ||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| Sbjct: 529 cccaacctgtcgctggatgacttcatcgtgcccgacgccgacgtcccgaccaagctgacc 588 Query: 543 aaggacctgttccccatggaccgcacc 569 ||||||||||||||||||||||||||| Sbjct: 589 aaggacctgttccccatggaccgcacc 615 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 7 aggcagcactgcccaaaccacctccttggcct 38 |||||||||||||||||||||||| ||||||| Sbjct: 13 aggcagcactgcccaaaccacctctttggcct 44 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 80 catggctcagatgctctccgcc 101 |||||||||||||||||||||| Sbjct: 135 catggctcagatgctctccgcc 156
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 202 bits (102), Expect = 9e-49 Identities = 279/338 (82%) Strand = Plus / Minus Query: 232 cgtcggcgatcggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccact 291 |||||||| | || ||| ||| |||||| ||||||||| |||| |||||||||||||||| Sbjct: 15807 cgtcggcggttggagacgtcaagctctcggtctccgacatgccgatgctgtcgtgccact 15748 Query: 292 acatccagaagggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgc 351 ||||||||||||| ||||||||||| |||| | ||| || || ||||||||||| ||| Sbjct: 15747 acatccagaaggggctcttcttcccgccccctggcgtgccgatcgcctccctcgtgtcgt 15688 Query: 352 tgctcgtgtcgtcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcg 411 |||||||| |||||||||| |||||||| | ||||| |||||||||||||| ||| Sbjct: 15687 cgctcgtgtgcgcgctctcccgggcgctcgcggtgttccctgccctcgccggccggctcg 15628 Query: 412 tcaccctccccgacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatc 471 |||| || || | ||||||||||||||| ||| ||| || | ||| || ||| | | Sbjct: 15627 tcacgctggatgatggccgcatcgtcatccggtgcgacggcgtggccgttgagttctacc 15568 Query: 472 acgccgtggcgccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccga 531 |||| || ||||| || |||||||| ||||||||| |||||||||||||||| |||| Sbjct: 15567 acgcggtcgcgcccgctctgtcgctgggagacttcctcgtgcccaacgccgacgtgccga 15508 Query: 532 ccaggctgaccaaggacctgttccccatggaccgcacc 569 |||||||||| ||||| |||||||||||||||||||| Sbjct: 15507 ccaggctgacgaaggatttgttccccatggaccgcacc 15470
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 202 bits (102), Expect = 9e-49 Identities = 279/338 (82%) Strand = Plus / Minus Query: 232 cgtcggcgatcggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccact 291 |||||||| | || ||| ||| |||||| ||||||||| |||| |||||||||||||||| Sbjct: 21896593 cgtcggcggttggagacgtcaagctctcggtctccgacatgccgatgctgtcgtgccact 21896534 Query: 292 acatccagaagggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgc 351 ||||||||||||| ||||||||||| |||| | ||| || || ||||||||||| ||| Sbjct: 21896533 acatccagaaggggctcttcttcccgccccctggcgtgccgatcgcctccctcgtgtcgt 21896474 Query: 352 tgctcgtgtcgtcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcg 411 |||||||| |||||||||| |||||||| | ||||| |||||||||||||| ||| Sbjct: 21896473 cgctcgtgtgcgcgctctcccgggcgctcgcggtgttccctgccctcgccggccggctcg 21896414 Query: 412 tcaccctccccgacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatc 471 |||| || || | ||||||||||||||| ||| ||| || | ||| || ||| | | Sbjct: 21896413 tcacgctggatgatggccgcatcgtcatccggtgcgacggcgtggccgttgagttctacc 21896354 Query: 472 acgccgtggcgccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccga 531 |||| || ||||| || |||||||| ||||||||| |||||||||||||||| |||| Sbjct: 21896353 acgcggtcgcgcccgctctgtcgctgggagacttcctcgtgcccaacgccgacgtgccga 21896294 Query: 532 ccaggctgaccaaggacctgttccccatggaccgcacc 569 |||||||||| ||||| |||||||||||||||||||| Sbjct: 21896293 ccaggctgacgaaggatttgttccccatggaccgcacc 21896256
>dbj|AK072009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104O15, full insert sequence Length = 1883 Score = 202 bits (102), Expect = 9e-49 Identities = 279/338 (82%) Strand = Plus / Plus Query: 232 cgtcggcgatcggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccact 291 |||||||| | || ||| ||| |||||| ||||||||| |||| |||||||||||||||| Sbjct: 226 cgtcggcggttggagacgtcaagctctcggtctccgacatgccgatgctgtcgtgccact 285 Query: 292 acatccagaagggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgc 351 ||||||||||||| ||||||||||| |||| | ||| || || ||||||||||| ||| Sbjct: 286 acatccagaaggggctcttcttcccgccccctggcgtgccgatcgcctccctcgtgtcgt 345 Query: 352 tgctcgtgtcgtcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcg 411 |||||||| |||||||||| |||||||| | ||||| |||||||||||||| ||| Sbjct: 346 cgctcgtgtgcgcgctctcccgggcgctcgcggtgttccctgccctcgccggccggctcg 405 Query: 412 tcaccctccccgacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatc 471 |||| || || | ||||||||||||||| ||| ||| || | ||| || ||| | | Sbjct: 406 tcacgctggatgatggccgcatcgtcatccggtgcgacggcgtggccgttgagttctacc 465 Query: 472 acgccgtggcgccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccga 531 |||| || ||||| || |||||||| ||||||||| |||||||||||||||| |||| Sbjct: 466 acgcggtcgcgcccgctctgtcgctgggagacttcctcgtgcccaacgccgacgtgccga 525 Query: 532 ccaggctgaccaaggacctgttccccatggaccgcacc 569 |||||||||| ||||| |||||||||||||||||||| Sbjct: 526 ccaggctgacgaaggatttgttccccatggaccgcacc 563
>dbj|AK107567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C10, full insert sequence Length = 1886 Score = 194 bits (98), Expect = 2e-46 Identities = 278/338 (82%) Strand = Plus / Plus Query: 232 cgtcggcgatcggggacctcacgctctccgtctccgacctgcccatgctgtcgtgccact 291 |||||||| | || ||| ||| |||||| ||||||||| |||| |||||||||||||||| Sbjct: 225 cgtcggcggttggagacgtcaagctctcggtctccgacatgccgatgctgtcgtgccact 284 Query: 292 acatccagaagggcctcttcttccccgcccccgacgtccccatggcctccctcgtctcgc 351 ||||||||||||| ||||||||||| |||| | ||| || || ||||||||||| ||| Sbjct: 285 acatccagaaggggctcttcttcccgccccctggcgtgccgatcgcctccctcgtgtcgt 344 Query: 352 tgctcgtgtcgtcgctctcccgcgcgctcgccatcttcccggccctcgccggccgcttcg 411 |||||||| |||||||||| |||||||| | ||||| |||||||||||||| ||| Sbjct: 345 cgctcgtgtgcgcgctctcccgggcgctcgcggtgttccctgccctcgccggccggctcg 404 Query: 412 tcaccctccccgacgaccgcatcgtcatccgctgcaacgacgccggcgtcgacttccatc 471 |||| || || | ||||||||||||||| ||| ||| || | ||| || ||| | | Sbjct: 405 tcacgctggatgatggccgcatcgtcatccggtgcgacggcgtggccgttgagttctacc 464 Query: 472 acgccgtggcgccagccctgtcgctcaacgacttcctcctgcccaacgccgacgtcccga 531 |||| || || || || |||||||| ||||||||| |||||||||||||||| |||| Sbjct: 465 acgcggtcgcccccgctctgtcgctgggagacttcctcgtgcccaacgccgacgtgccga 524 Query: 532 ccaggctgaccaaggacctgttccccatggaccgcacc 569 |||||||||| ||||| |||||||||||||||||||| Sbjct: 525 ccaggctgacgaaggatttgttccccatggaccgcacc 562
>ref|NM_129556.2| Arabidopsis thaliana transferase AT2G39980 mRNA, complete cds Length = 1656 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 147 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 199
>gb|DQ446611.1| Arabidopsis thaliana clone pENTR221-At2g39975 transferase family protein (At2g39975) gene, complete cds Length = 1449 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 76 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 128
>gb|AY124856.1| Arabidopsis thaliana At2g39980/T28M21.14 mRNA, complete cds Length = 1449 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 76 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 128
>gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete sequence Length = 108847 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 58471 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 58419
>gb|AF372968.1|AF372968 Arabidopsis thaliana At2g39980/T28M21.14 mRNA, complete cds Length = 1655 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 147 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 199
>emb|BX820326.1|CNS0A9I6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZH08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1576 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 135 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 187
>emb|BX820551.1|CNS0A9IJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH47ZF01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1591 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 108 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 160
>emb|BX820371.1|CNS0A9MP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH27ZB08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1568 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 125 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 177
>emb|BX820247.1|CNS0A9IF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH12ZC04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1615 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 246 gacctcacgctctccgtctccgacctgcccatgctgtcgtgccactacatcca 298 ||||||| ||||||||||||||| || |||||||| || |||||||||||||| Sbjct: 144 gacctcaagctctccgtctccgatcttcccatgctctcttgccactacatcca 196
>ref|NM_186258.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1428 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 289 actacatccagaagggcctcttcttcc 315 |||||||||||||||||||| |||||| Sbjct: 137 actacatccagaagggcctcctcttcc 163
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 248 cctcacgctctccgtctccgacc 270 ||||||||||||||||||||||| Sbjct: 6250594 cctcacgctctccgtctccgacc 6250572 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 caccgtccccaccgcccccgccat 139 |||||||||||||||| ||||||| Sbjct: 31414829 caccgtccccaccgccgccgccat 31414806
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 289 actacatccagaagggcctcttcttcc 315 |||||||||||||||||||| |||||| Sbjct: 2220955 actacatccagaagggcctcctcttcc 2220929
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 248 cctcacgctctccgtctccgacc 270 ||||||||||||||||||||||| Sbjct: 6249807 cctcacgctctccgtctccgacc 6249785 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 caccgtccccaccgcccccgccat 139 |||||||||||||||| ||||||| Sbjct: 31505345 caccgtccccaccgccgccgccat 31505322
>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0090D11, complete sequence Length = 115403 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 248 cctcacgctctccgtctccgacc 270 ||||||||||||||||||||||| Sbjct: 89205 cctcacgctctccgtctccgacc 89183
>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21, complete sequence Length = 155651 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 248 cctcacgctctccgtctccgacc 270 ||||||||||||||||||||||| Sbjct: 63802 cctcacgctctccgtctccgacc 63780
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 289 actacatccagaagggcctcttcttcc 315 |||||||||||||||||||| |||||| Sbjct: 88857 actacatccagaagggcctcctcttcc 88831
>dbj|AK121985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O18, full insert sequence Length = 2157 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 248 cctcacgctctccgtctccgacc 270 ||||||||||||||||||||||| Sbjct: 403 cctcacgctctccgtctccgacc 425
>dbj|AK100702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114O06, full insert sequence Length = 2327 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 248 cctcacgctctccgtctccgacc 270 ||||||||||||||||||||||| Sbjct: 393 cctcacgctctccgtctccgacc 415
>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 289 actacatccagaagggcctcttcttc 314 |||||||||||||||||||| ||||| Sbjct: 125633 actacatccagaagggcctcctcttc 125608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 tcgccggccgcttcgtcacc 416 |||||||||||||||||||| Sbjct: 125504 tcgccggccgcttcgtcacc 125485
>gb|AC138000.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0024M06, complete sequence Length = 51144 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 289 actacatccagaagggcctcttcttc 314 |||||||||||||||||||| ||||| Sbjct: 49720 actacatccagaagggcctcctcttc 49745 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tcgccggccgcttcgtcacc 416 |||||||||||||||||||| Sbjct: 49849 tcgccggccgcttcgtcacc 49868
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 289 actacatccagaagggcctcttcttc 314 |||||||||||||||||||| ||||| Sbjct: 7666547 actacatccagaagggcctcctcttc 7666522 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 tcgccggccgcttcgtcacc 416 |||||||||||||||||||| Sbjct: 7666418 tcgccggccgcttcgtcacc 7666399
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 433 tcgtcatccgctgcaacgacgccggc 458 |||||||| ||||||||||||||||| Sbjct: 481327 tcgtcatcggctgcaacgacgccggc 481352
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 289 actacatccagaagggcctcttcttc 314 |||||||||||||||||||| ||||| Sbjct: 7736634 actacatccagaagggcctcctcttc 7736609 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 tcgccggccgcttcgtcacc 416 |||||||||||||||||||| Sbjct: 7736505 tcgccggccgcttcgtcacc 7736486
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 tcgccggccgcttcgtcaccc 417 ||||||||||||||||||||| Sbjct: 212278 tcgccggccgcttcgtcaccc 212298
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19 Length = 163558 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 tcgccggccgcttcgtcaccc 417 ||||||||||||||||||||| Sbjct: 77174 tcgccggccgcttcgtcaccc 77194
>dbj|AK110874.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F10, full insert sequence Length = 1526 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 tcgccggccgcttcgtcaccc 417 ||||||||||||||||||||| Sbjct: 1161 tcgccggccgcttcgtcaccc 1141
>dbj|AK103757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143E17, full insert sequence Length = 1677 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 tcgccggccgcttcgtcaccc 417 ||||||||||||||||||||| Sbjct: 260 tcgccggccgcttcgtcaccc 280
>gb|AY707079.1| Streptomyces turgidiscabies pathogenicity island putative beta-glucosidase pseudogene, partial cds; and putative tomatinase (tomA) and putative lacI family transcriptional regulator genes, complete cds Length = 4600 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 tcccggccctcgccggccgct 408 ||||||||||||||||||||| Sbjct: 1201 tcccggccctcgccggccgct 1221
>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0681G01, complete sequence Length = 184118 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 tcgccggccgcttcgtcaccc 417 ||||||||||||||||||||| Sbjct: 8264 tcgccggccgcttcgtcaccc 8244
>emb|AL844583.6| Mouse DNA sequence from clone RP23-240F13 on chromosome X, complete sequence Length = 176870 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 caaccaggccatctgcctgga 166 ||||||||||||||||||||| Sbjct: 126499 caaccaggccatctgcctgga 126519
>gb|AF071045.1| Drosophila mercatorum sub-species pararepleta alpha-amylase (Amy) gene, partial cds Length = 890 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 cgctgcaacgacgccggcgt 460 |||||||||||||||||||| Sbjct: 217 cgctgcaacgacgccggcgt 236
>ref|XM_469899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3159 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 caccgtccccaccgcccccgccat 139 |||||||||||||||| ||||||| Sbjct: 220 caccgtccccaccgccgccgccat 197
>gb|AY881693.1| Baboon herpesvirus 2 strain 860 ICP22 (US1), US2 (US2), protein kinase (US3), glycoprotein G (US4), glycoprotein J (US5), glycoprotein D (US6), glycoprotein I (US7), glycoprotein E (US8), US8.5 (US8.5), US9 (US9), US10 (US10), tegument protein (US11), and ICP47 (US12) genes, complete cds Length = 15072 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tccccgcccccgacgtcccc 332 |||||||||||||||||||| Sbjct: 5779 tccccgcccccgacgtcccc 5760
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ccatgtcgggctcgggcatc 191 |||||||||||||||||||| Sbjct: 934537 ccatgtcgggctcgggcatc 934556
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 accaggccatctgcctggac 167 |||||||||||||||||||| Sbjct: 1067406 accaggccatctgcctggac 1067387
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 caccgtccccaccgcccccgccat 139 |||||||||||||||| ||||||| Sbjct: 80971 caccgtccccaccgccgccgccat 80994
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccgtccccaccgcccccgcc 137 |||||||||||||||||||| Sbjct: 1503507 ccgtccccaccgcccccgcc 1503526
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 cgacgaccgcatcgtcatcc 441 |||||||||||||||||||| Sbjct: 4661252 cgacgaccgcatcgtcatcc 4661233
>gb|AC099050.2| Homo sapiens chromosome 3 clone RP11-413B21, complete sequence Length = 174036 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 537 ctgaccaaggacctgttccc 556 |||||||||||||||||||| Sbjct: 34262 ctgaccaaggacctgttccc 34281
>gb|AC090017.18| Homo sapiens 12q BAC RP11-471N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196962 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 ctgaccaaggacctgttccc 556 |||||||||||||||||||| Sbjct: 126102 ctgaccaaggacctgttccc 126083
>gb|DQ028632.1| Aichi virus isolate Goiania/GO/03/01/Brazil, complete genome Length = 8266 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgtccccatggcctccctcg 345 |||||||||||||||||||| Sbjct: 5299 cgtccccatggcctccctcg 5318
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 acgtccccatggcctccctc 344 |||||||||||||||||||| Sbjct: 25122969 acgtccccatggcctccctc 25122988
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 tccccgacgaccgcatcgtc 437 |||||||||||||||||||| Sbjct: 2863707 tccccgacgaccgcatcgtc 2863688 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgcccccgacgtccccatgg 336 |||||||||||||||||||| Sbjct: 182029 cgcccccgacgtccccatgg 182048
>dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0064I19 Length = 111644 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 acgtccccatggcctccctc 344 |||||||||||||||||||| Sbjct: 27144 acgtccccatggcctccctc 27163
>emb|AJ224681.1|TAAJ4681 Triticum aestivum mRNA for beta-fructosidase, partial CDS Length = 750 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 cctccccgacgaccgcatcgtcat 439 ||||||||||| |||||||||||| Sbjct: 147 cctccccgacggccgcatcgtcat 170
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tccccgcccccgacgtcccc 332 |||||||||||||||||||| Sbjct: 139885 tccccgcccccgacgtcccc 139866
>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 gccactacatccagaagggcctct 309 ||||||||| |||||||||||||| Sbjct: 69065 gccactacacccagaagggcctct 69042
>emb|AL669949.11| Mouse DNA sequence from clone RP23-227I2 on chromosome 4, complete sequence Length = 124454 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ctgcccaaaccacctccttggcct 38 |||||||||||||||||| ||||| Sbjct: 3393 ctgcccaaaccacctcctgggcct 3416 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,485,290 Number of Sequences: 3902068 Number of extensions: 3485290 Number of successful extensions: 71379 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70251 Number of HSP's gapped (non-prelim): 1121 length of query: 569 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 546 effective length of database: 17,143,297,704 effective search space: 9360240546384 effective search space used: 9360240546384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
