ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart57c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196910.1| Oryza sativa (japonica cultivar-group) hypothet... 127 4e-26
2gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 127 4e-26
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 127 4e-26
5ref|NM_196911.1| Oryza sativa (japonica cultivar-group) hypothet... 90 9e-15
6ref|XM_470948.1| Oryza sativa (japonica cultivar-group), predic... 64 5e-07
7emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4,... 64 5e-07
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
9emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 64 5e-07
10emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4,... 64 5e-07
11ref|NM_196909.1| Oryza sativa (japonica cultivar-group) unknown ... 58 3e-05
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
13emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.031
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.031
15emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 48 0.031
16emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chro... 42 1.9
17emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 42 1.9
18dbj|AB221129.1| Pelotomaculum thermopropionicum odcA, odcB genes... 42 1.9
19dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.9
20ref|NM_191278.1| Oryza sativa (japonica cultivar-group), predic... 40 7.6
21gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 7.6
22emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 40 7.6
23gb|AY366085.1| Zea mays cultivar B73 PGP1 (pgp1) gene, complete cds 40 7.6
24gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 7.6
25gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 7.6
26emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome... 40 7.6
27emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 7.6
28ref|NM_170464.1| Drosophila melanogaster CG7950-RB, transcript v... 40 7.6
29ref|NM_143513.1| Drosophila melanogaster CG7950-RA, transcript v... 40 7.6
30dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 7.6
31dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
32gb|AC007886.7|AC007886 Drosophila melanogaster, chromosome 3R, r... 40 7.6
33gb|AC009733.5|AC009733 Drosophila melanogaster, chromosome 3R, r... 40 7.6
34dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
35gb|AE004698.1| Pseudomonas aeruginosa PAO1, section 259 of 529 o... 40 7.6
36gb|BT003292.1| Drosophila melanogaster GM02245 full insert cDNA 40 7.6
37dbj|AK108853.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
38gb|AE003772.2| Drosophila melanogaster chromosome 3R, section 11... 40 7.6
39gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 7.6
40gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 7.6
41gb|L15366.1|PSEFLAGA Pseudomonas putida flagellin gene, complete... 40 7.6 
>ref|NM_196910.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0071K18.17), mRNA
          Length = 1821

 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                       
Query: 89  cggcgggcaggccaccttcacggcggagtgctcccacaccttccacttcaactgcatctc 148
           |||||||||||||| |||||||||||||||||||||||||||||||  |  ||||||| |
Sbjct: 48  cggcgggcaggccatcttcacggcggagtgctcccacaccttccacaaccgctgcatcgc 107

                                                               
Query: 149 cgccagcgtcgcgcacggccacctcgtctgcccgctctgcaacgcgcgctgg 200
           |   | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 108 ccggaacgtcgcgcacggccgccgcgtctgcccgctctgcaacgcgcgctgg 159
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>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
             sequence
          Length = 149758

 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                         
Query: 89    cggcgggcaggccaccttcacggcggagtgctcccacaccttccacttcaactgcatctc 148
             |||||||||||||| |||||||||||||||||||||||||||||||  |  ||||||| |
Sbjct: 19690 cggcgggcaggccatcttcacggcggagtgctcccacaccttccacaaccgctgcatcgc 19749

                                                                 
Query: 149   cgccagcgtcgcgcacggccacctcgtctgcccgctctgcaacgcgcgctgg 200
             |   | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 19750 ccggaacgtcgcgcacggccgccgcgtctgcccgctctgcaacgcgcgctgg 19801



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 93/109 (85%)
 Strand = Plus / Plus

                                                                         
Query: 105   ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgtcgcgcac 164
             ||||||||||||||||| |||   ||||||||| |||||||||||| || |||||||| |
Sbjct: 17037 ttcacggcggagtgctcgcaccagttccacttccactgcatctccggcaccgtcgcgcgc 17096

                                                              
Query: 165   ggccacctcgtctgcccgctctgcaacgcgcgctggcgtgagctgccgt 213
             || | | ||| ||||||||||||| ||||||| ||||| ||||| ||||
Sbjct: 17097 ggacgcatcgcctgcccgctctgccacgcgcggtggcgcgagctcccgt 17145



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 105   ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgt 157
             ||||| ||||| ||||||||||  ||||||||| ||||||||||| |||||||
Sbjct: 31535 ttcaccgcggaatgctcccacaagttccacttccactgcatctcctccagcgt 31587
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                            
Query: 89       cggcgggcaggccaccttcacggcggagtgctcccacaccttccacttcaactgcatctc 148
                |||||||||||||| |||||||||||||||||||||||||||||||  |  ||||||| |
Sbjct: 16640152 cggcgggcaggccatcttcacggcggagtgctcccacaccttccacaaccgctgcatcgc 16640093

                                                                    
Query: 149      cgccagcgtcgcgcacggccacctcgtctgcccgctctgcaacgcgcgctgg 200
                |   | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 16640092 ccggaacgtcgcgcacggccgccgcgtctgcccgctctgcaacgcgcgctgg 16640041



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 93/109 (85%)
 Strand = Plus / Minus

                                                                            
Query: 105      ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgtcgcgcac 164
                ||||||||||||||||| |||   ||||||||| |||||||||||| || |||||||| |
Sbjct: 16642805 ttcacggcggagtgctcgcaccagttccacttccactgcatctccggcaccgtcgcgcgc 16642746

                                                                 
Query: 165      ggccacctcgtctgcccgctctgcaacgcgcgctggcgtgagctgccgt 213
                || | | ||| ||||||||||||| ||||||| ||||| ||||| ||||
Sbjct: 16642745 ggacgcatcgcctgcccgctctgccacgcgcggtggcgcgagctcccgt 16642697



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 105      ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgt 157
                ||||| ||||| ||||||||||  ||||||||| ||||||||||| |||||||
Sbjct: 16628707 ttcaccgcggaatgctcccacaagttccacttccactgcatctcctccagcgt 16628655
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  127 bits (64), Expect = 4e-26
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                            
Query: 89       cggcgggcaggccaccttcacggcggagtgctcccacaccttccacttcaactgcatctc 148
                |||||||||||||| |||||||||||||||||||||||||||||||  |  ||||||| |
Sbjct: 16648793 cggcgggcaggccatcttcacggcggagtgctcccacaccttccacaaccgctgcatcgc 16648734

                                                                    
Query: 149      cgccagcgtcgcgcacggccacctcgtctgcccgctctgcaacgcgcgctgg 200
                |   | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 16648733 ccggaacgtcgcgcacggccgccgcgtctgcccgctctgcaacgcgcgctgg 16648682



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 93/109 (85%)
 Strand = Plus / Minus

                                                                            
Query: 105      ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgtcgcgcac 164
                ||||||||||||||||| |||   ||||||||| |||||||||||| || |||||||| |
Sbjct: 16651446 ttcacggcggagtgctcgcaccagttccacttccactgcatctccggcaccgtcgcgcgc 16651387

                                                                 
Query: 165      ggccacctcgtctgcccgctctgcaacgcgcgctggcgtgagctgccgt 213
                || | | ||| ||||||||||||| ||||||| ||||| ||||| ||||
Sbjct: 16651386 ggacgcatcgcctgcccgctctgccacgcgcggtggcgcgagctcccgt 16651338



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 105      ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgt 157
                ||||| ||||| ||||||||||  ||||||||| ||||||||||| |||||||
Sbjct: 16636948 ttcaccgcggaatgctcccacaagttccacttccactgcatctcctccagcgt 16636896
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>ref|NM_196911.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0071K18.16), mRNA
          Length = 1941

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 93/109 (85%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgtcgcgcac 164
           ||||||||||||||||| |||   ||||||||| |||||||||||| || |||||||| |
Sbjct: 73  ttcacggcggagtgctcgcaccagttccacttccactgcatctccggcaccgtcgcgcgc 132

                                                            
Query: 165 ggccacctcgtctgcccgctctgcaacgcgcgctggcgtgagctgccgt 213
           || | | ||| ||||||||||||| ||||||| ||||| ||||| ||||
Sbjct: 133 ggacgcatcgcctgcccgctctgccacgcgcggtggcgcgagctcccgt 181
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>ref|XM_470948.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1932

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 105 ttcacggcggagtgctcccacaccttccacttcaactgcatctccgcc 152
           ||||||||||||||||||||| |||||||||||  ||||||| |||||
Sbjct: 277 ttcacggcggagtgctcccactccttccacttcccctgcatcgccgcc 324
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>emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1160F02, complete
              sequence
          Length = 139971

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 105    ttcacggcggagtgctcccacaccttccacttcaactgcatctccgcc 152
              ||||||||||||||||||||| |||||||||||  ||||||| |||||
Sbjct: 114131 ttcacggcggagtgctcccactccttccacttcccctgcatcgccgcc 114084
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 105    ttcacggcggagtgctcccacaccttccacttcaactgcatctccgcc 152
              ||||||||||||||||||||| |||||||||||  ||||||| |||||
Sbjct: 114131 ttcacggcggagtgctcccactccttccacttcccctgcatcgccgcc 114084
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>emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0102C09, complete
             sequence
          Length = 72636

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 105   ttcacggcggagtgctcccacaccttccacttcaactgcatctccgcc 152
             ||||||||||||||||||||| |||||||||||  ||||||| |||||
Sbjct: 61017 ttcacggcggagtgctcccactccttccacttcccctgcatcgccgcc 60970
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>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06,
             complete sequence
          Length = 145517

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 105   ttcacggcggagtgctcccacaccttccacttcaactgcatctccgcc 152
             ||||||||||||||||||||| |||||||||||  ||||||| |||||
Sbjct: 45380 ttcacggcggagtgctcccactccttccacttcccctgcatcgccgcc 45333
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>ref|NM_196909.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0071K18.2), mRNA
          Length = 2196

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 105 ttcacggcggagtgctcccacaccttccacttcaactgcatctccgccagcgt 157
           ||||| ||||| ||||||||||  ||||||||| ||||||||||| |||||||
Sbjct: 259 ttcaccgcggaatgctcccacaagttccacttccactgcatctcctccagcgt 311
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 99      gccaccttcacggcggagtgctcccacaccttccac 134
               |||| |||||| || |||||||||||||||||||||
Sbjct: 5415021 gccatcttcaccgccgagtgctcccacaccttccac 5415056
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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 99    gccaccttcacggcggagtgctcccacaccttccac 134
             |||| |||||| || |||||||||||||||||||||
Sbjct: 87037 gccatcttcaccgccgagtgctcccacaccttccac 87072
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 99      gccaccttcacggcggagtgctcccacaccttccac 134
               |||| |||||| || |||||||||||||||||||||
Sbjct: 5415010 gccatcttcaccgccgagtgctcccacaccttccac 5415045
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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 141841

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 99    gccaccttcacggcggagtgctcccacaccttccac 134
             |||| |||||| || |||||||||||||||||||||
Sbjct: 50787 gccatcttcaccgccgagtgctcccacaccttccac 50752
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>emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chromosome 9, complete
             sequence
          Length = 196093

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    agcagcctgcagtttcagaga 30
             |||||||||||||||||||||
Sbjct: 39185 agcagcctgcagtttcagaga 39205
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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    ctcggcggcatggccgccggc 89
             |||||||||||||||||||||
Sbjct: 56544 ctcggcggcatggccgccggc 56524
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>dbj|AB221129.1| Pelotomaculum thermopropionicum odcA, odcB genes for pyruvate
            carboxylase biotin-containing subunit, pyruvate
            carboxylase ATP-binding subunit, complete cds
          Length = 3307

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 76   gcatggccgccggcggcgggc 96
            |||||||||||||||||||||
Sbjct: 2270 gcatggccgccggcggcgggc 2250
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>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177,
             complete sequence
          Length = 133589

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 105   ttcacggcggagtgctcccacaccttccacttc 137
             ||||| ||||| ||||| |||||||||||||||
Sbjct: 25927 ttcactgcggaatgctctcacaccttccacttc 25895
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>ref|NM_191278.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 717

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 57  tgcgccatctgcctcggcggcatg 80
           ||||||||||||||||||| ||||
Sbjct: 349 tgcgccatctgcctcggcgccatg 372
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 69      ctcggcggcatggccgccgg 88
               ||||||||||||||||||||
Sbjct: 3345973 ctcggcggcatggccgccgg 3345992
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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   catcaccagccgccaccgcc 382
             ||||||||||||||||||||
Sbjct: 68582 catcaccagccgccaccgcc 68563
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>gb|AY366085.1| Zea mays cultivar B73 PGP1 (pgp1) gene, complete cds
          Length = 7139

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 143  catctccgccagcgtcgcgc 162
            ||||||||||||||||||||
Sbjct: 2623 catctccgccagcgtcgcgc 2604
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     tgcaacatcaccagccgcca 377
               ||||||||||||||||||||
Sbjct: 1681446 tgcaacatcaccagccgcca 1681427
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 372     ccgccaccgcccgtgcatac 391
               ||||||||||||||||||||
Sbjct: 2908795 ccgccaccgcccgtgcatac 2908814
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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     ctcggcggcatggccgccgg 88
              ||||||||||||||||||||
Sbjct: 232559 ctcggcggcatggccgccgg 232578
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>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14
          Length = 318050

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     ctcggcggcatggccgccgg 88
              ||||||||||||||||||||
Sbjct: 183212 ctcggcggcatggccgccgg 183231
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>ref|NM_170464.1| Drosophila melanogaster CG7950-RB, transcript variant B (CG7950),
           mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 65  ctgcctcggcggcatggccgccgg 88
           ||||||||||||||||||| ||||
Sbjct: 678 ctgcctcggcggcatggccaccgg 701
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>ref|NM_143513.1| Drosophila melanogaster CG7950-RA, transcript variant A (CG7950),
           mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 65  ctgcctcggcggcatggccgccgg 88
           ||||||||||||||||||| ||||
Sbjct: 654 ctgcctcggcggcatggccaccgg 677
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 358     tgcaacatcaccagccgcca 377
               ||||||||||||||||||||
Sbjct: 2746840 tgcaacatcaccagccgcca 2746859
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 57       tgcgccatctgcctcggcggcatg 80
                ||||||||||||||||||| ||||
Sbjct: 31704419 tgcgccatctgcctcggcgccatg 31704442
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>gb|AC007886.7|AC007886 Drosophila melanogaster, chromosome 3R, region 99D-99D, BAC clone
              BACR07A18, complete sequence
          Length = 168469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 65     ctgcctcggcggcatggccgccgg 88
              ||||||||||||||||||| ||||
Sbjct: 167639 ctgcctcggcggcatggccaccgg 167662
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>gb|AC009733.5|AC009733 Drosophila melanogaster, chromosome 3R, region 99E-99E, BAC clone
             BACR05L15, complete sequence
          Length = 181056

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    ctgcctcggcggcatggccgccgg 88
             ||||||||||||||||||| ||||
Sbjct: 11666 ctgcctcggcggcatggccaccgg 11689
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>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0503C12
          Length = 147180

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     tgcgccatctgcctcggcggcatg 80
              ||||||||||||||||||| ||||
Sbjct: 118151 tgcgccatctgcctcggcgccatg 118174
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>gb|AE004698.1| Pseudomonas aeruginosa PAO1, section 259 of 529 of the complete
            genome
          Length = 11466

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 70   tcggcggcatggccgccggcggcg 93
            ||||| ||||||||||||||||||
Sbjct: 6011 tcggcagcatggccgccggcggcg 6034
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>gb|BT003292.1| Drosophila melanogaster GM02245 full insert cDNA
          Length = 1190

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 65  ctgcctcggcggcatggccgccgg 88
           ||||||||||||||||||| ||||
Sbjct: 654 ctgcctcggcggcatggccaccgg 677
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>dbj|AK108853.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A11, full
           insert sequence
          Length = 1150

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 57  tgcgccatctgcctcggcggcatg 80
           ||||||||||||||||||| ||||
Sbjct: 527 tgcgccatctgcctcggcgccatg 550
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>gb|AE003772.2| Drosophila melanogaster chromosome 3R, section 110 of 118 of the
             complete sequence
          Length = 228443

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    ctgcctcggcggcatggccgccgg 88
             ||||||||||||||||||| ||||
Sbjct: 81207 ctgcctcggcggcatggccaccgg 81230
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 538     acccggctgtcgccagggcc 557
               ||||||||||||||||||||
Sbjct: 4970296 acccggctgtcgccagggcc 4970277
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 433    tcttcgacgacgatgagcaggtgg 456
              |||||||||||||||||| |||||
Sbjct: 428920 tcttcgacgacgatgagccggtgg 428943
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>gb|L15366.1|PSEFLAGA Pseudomonas putida flagellin gene, complete cds
          Length = 2531

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 538 acccggctgtcgccagggcc 557
           ||||||||||||||||||||
Sbjct: 276 acccggctgtcgccagggcc 295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,162,151
Number of Sequences: 3902068
Number of extensions: 4162151
Number of successful extensions: 73768
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72905
Number of HSP's gapped (non-prelim): 863
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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