ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57b04 |
|---|---|
| Clone Library Name | barley_pub |
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 36.6 bits (83), Expect = 0.039 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = +2 Query: 239 SWVGDDPCGHGDLPPWSGVTCTQQGDYRVVTELEVYAVSIVGPFPTAVT 385 SW GD PC L PW GV C V+T+L++ + ++ G P++VT Sbjct: 382 SWSGD-PCM---LFPWKGVACDGSNGSSVITKLDLSSSNLKGTIPSSVT 426
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 36.6 bits (83), Expect = 0.039 Identities = 25/88 (28%), Positives = 36/88 (40%) Frame = +2 Query: 239 SWVGDDPCGHGDLPPWSGVTCTQQGDYRVVTELEVYAVSIVGPFPTAVTXXXXXXXXXXX 418 SW H D W GVTC V L + ++S+ G P ++ Sbjct: 45 SWNVSSSASHCD---WVGVTCLLGR----VNSLSLPSLSLRGQIPKEISSLKNLRELCLA 97 Query: 419 XXXXTAPIPPQIGRLRHLKILNLRWNKL 502 + IPP+I L+HL+ L+L N L Sbjct: 98 GNQFSGKIPPEIWNLKHLQTLDLSGNSL 125
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does| not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 35.8 bits (81), Expect = 0.067 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +2 Query: 239 SWVGDDPCGHGDLPPWSGVTCTQQGDYRVVTELEVYAVSIVGPFPTAVT 385 SW GD PC + PW G+TC ++T+L++ + ++ G P+ VT Sbjct: 384 SWSGD-PCM---IFPWKGITCDDSTGSSIITKLDLSSNNLKGAIPSIVT 428
>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor| (Polygalacturonase-inhibiting protein) Length = 330 Score = 35.4 bits (80), Expect = 0.088 Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Frame = +2 Query: 185 DVKALNGIKASLGWR-VVYSWVGDDPCGHGDLPPWSGVTCTQQGDYRVVTELEVYAVSIV 361 D K L IK + G V+ SW D C W VTC + + L ++A + Sbjct: 31 DKKVLLQIKKAFGDPYVLASWKSDTDCCD-----WYCVTCDSTTNR--INSLTIFAGQVS 83 Query: 362 GPFPTAVTXXXXXXXXXXXXX-XXTAPIPPQIGRLRHLKILNLRWNKL 502 G P V T PI P I +L+ LK L L W L Sbjct: 84 GQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNL 131
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 35.4 bits (80), Expect = 0.088 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Frame = +2 Query: 188 VKALNGIKASLGW--RVVYSWVGDDPCGHGDLPPWSGVTCTQQGDYRVVTELEVYAVSIV 361 VK+L I +S + R+ SW G+DPC + W G+ C+ +T + + + + Sbjct: 325 VKSLLLIASSFDYPPRLAESWKGNDPCTN-----WIGIACSNGN----ITVISLEKMELT 375 Query: 362 GPFPTAVTXXXXXXXXXXXXXXXTAPIPPQIGRLRHLKILNLRWNKL 502 G T IP ++ L +LK L++ NKL Sbjct: 376 GTISPEFGAIKSLQRIILGINNLTGMIPQELTTLPNLKTLDVSSNKL 422
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 34.3 bits (77), Expect = 0.20 Identities = 21/72 (29%), Positives = 30/72 (41%) Frame = +2 Query: 287 SGVTCTQQGDYRVVTELEVYAVSIVGPFPTAVTXXXXXXXXXXXXXXXTAPIPPQIGRLR 466 SG Q G + LE+Y+ +I G P + + PIP +GRL+ Sbjct: 81 SGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLK 140 Query: 467 HLKILNLRWNKL 502 L+ L L N L Sbjct: 141 KLRFLRLNNNSL 152
>TMM_ARATH (Q9SSD1) TOO MANY MOUTHS protein precursor (TMM)| Length = 496 Score = 33.1 bits (74), Expect = 0.44 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +2 Query: 356 IVGPFPTAVTXXXXXXXXXXXXXXXTAPIPPQIGRLRHLKILNLRWNKL 502 + GP P +T T PIP I RL L +L+L +N+L Sbjct: 241 LTGPVPPTLTSCGSLIKIDLSRNRVTGPIPESINRLNQLVLLDLSYNRL 289
>NAGAB_MOUSE (Q9QWR8) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 415 Score = 31.2 bits (69), Expect = 1.7 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -1 Query: 496 IPPQVQYLEVS*PSNLWRNWR 434 +PP+V Y EVS NLWRN++ Sbjct: 196 LPPKVNYTEVSRVCNLWRNYK 216
>NAGAB_RAT (Q66H12) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 415 Score = 30.4 bits (67), Expect = 2.8 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -1 Query: 496 IPPQVQYLEVS*PSNLWRNWR 434 +PP+V Y EV+ NLWRN++ Sbjct: 196 LPPKVNYTEVAGTCNLWRNYK 216
>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor| Length = 372 Score = 30.4 bits (67), Expect = 2.8 Identities = 15/49 (30%), Positives = 21/49 (42%) Frame = +2 Query: 356 IVGPFPTAVTXXXXXXXXXXXXXXXTAPIPPQIGRLRHLKILNLRWNKL 502 I G P +T T IP +IG+L L +LNL N++ Sbjct: 123 ITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQM 171
>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven| Length = 342 Score = 30.0 bits (66), Expect = 3.7 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = -3 Query: 80 LGRAGWLASGGCGERGGRPYEKGRGR 3 +G A LA GGCG+ GGR +GRGR Sbjct: 27 VGAATALARGGCGDGGGR---RGRGR 49
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 29.6 bits (65), Expect = 4.8 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 19 SYGLPPRSPQPPLASQPARPNPATHGR 99 S G RSP+ P AS PA +P+ HGR Sbjct: 2443 SSGATGRSPRTPRASGPACASPSRHGR 2469
>TIG_LACAC (Q5FKR7) Trigger factor (TF)| Length = 442 Score = 29.6 bits (65), Expect = 4.8 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +1 Query: 385 KPAGFKKTGSPQ**VDGANSSTDWTAKTPQDIEPEVE 495 K AG G PQ + DWT K ++PEVE Sbjct: 81 KEAGINAVGQPQIVPVSMDKDKDWTMKATVTVQPEVE 117
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 29.6 bits (65), Expect = 4.8 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +1 Query: 7 PLPFSYGLPPRSPQPPL---ASQPARPNPATHGRGV 105 PLP S G+PP P PPL A P P P G G+ Sbjct: 672 PLPGSAGIPP--PPPPLPGEAGMPPPPPPLPGGPGI 705
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +1 Query: 7 PLPFSYGLPPRSPQPPLASQPARPNPATHGRG 102 P P S G PP P PP +S P P P GRG Sbjct: 279 PPPPSRGGPPPPPPPPHSSGP--PPPPARGRG 308
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +1 Query: 7 PLPFSYGLPPRSPQPPLASQPARPNPATHGRG 102 P P S G PP P PP +S P P P GRG Sbjct: 276 PPPPSRGGPPPPPPPPHSSGP--PPPPARGRG 305
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +1 Query: 7 PLPFSYGLPPRSPQPPLASQPARPNPATHGRG 102 P P S G PP P PP +S P P P GRG Sbjct: 276 PPPPSRGGPPPPPPPPHSSGP--PPPPARGRG 305
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 31 PPRSPQPPLASQPARPNPATHGRG 102 PP P PP QPA+P PA G Sbjct: 31 PPPPPLPPQQQQPAQPGPAASPAG 54
>VCIP1_RAT (Q8CF97) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1221 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +1 Query: 22 YGLPPRSPQPPLASQPARPNPATHG 96 YG PP+ PP A P P HG Sbjct: 818 YGFPPKELMPPQAGMEKEPVPLQHG 842
>VCIP1_HUMAN (Q96JH7) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1222 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +1 Query: 22 YGLPPRSPQPPLASQPARPNPATHG 96 YG PP+ PP A P P HG Sbjct: 819 YGFPPKELMPPQAGMEKEPVPLQHG 843
>FA61A_MOUSE (Q8K2F8) Protein FAM61A| Length = 462 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -3 Query: 77 GRAGWLASGGCGERGGRPYEKGRG 6 GR G+ GG G RGGR GRG Sbjct: 404 GRGGYRGRGGLGFRGGRGRGSGRG 427
>VCIP1_MOUSE (Q8CDG3) Deubiquitinating protein VCIP135 (EC 3.4.22.-)| (Valosin-containing protein p97/p47 complex-interacting protein p135) (Valosin-containing protein p97/p47 complex-interacting protein 1) Length = 1220 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/25 (44%), Positives = 12/25 (48%) Frame = +1 Query: 22 YGLPPRSPQPPLASQPARPNPATHG 96 YG PP+ PP A P P HG Sbjct: 818 YGFPPKELMPPQAGMEKEPVPLQHG 842
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +1 Query: 7 PLPFSYGLPPRSPQPPLASQPARPNPATHGRGV 105 PLP G+PP P PPL P P G G+ Sbjct: 901 PLP-GLGVPPPPPAPPLPGMGIPPPPPLPGMGI 932 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,551,641 Number of Sequences: 219361 Number of extensions: 1178374 Number of successful extensions: 5597 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5528 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
