ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart57b04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106193.1| Zea mays PCO120598 mRNA sequence Length = 1504 Score = 359 bits (181), Expect = 6e-96 Identities = 297/338 (87%) Strand = Plus / Plus Query: 168 gcaagacggtgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctgga 227 |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| Sbjct: 212 gcaagacggtgaagagagacgtgaaagcattgaatgagatcaaatcttcactaggctgga 271 Query: 228 gagttgtctattcatgggtcggtgacgacccttgtggccatggtgaccttcccccctggt 287 ||||||| || |||||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 272 gagttgtatactcatgggtcggtgatgatccttgtgggcatggtgatctacccccctggt 331 Query: 288 ccggtgtcacatgtactcagcaaggggattacagagttgtcacggaactggaagtctatg 347 | ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 332 ctggtgtgacatgttctcagcaaggggattacagagttgtgacggaactggaagtctatg 391 Query: 348 ctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnc 407 |||| ||||||||||| || ||||| ||||| ||||| |||||| ||||| | Sbjct: 392 ctgtatcaatagttggccctttcccaacagcagtaactaacctgttggatctaagaagat 451 Query: 408 tggatctccacaataataagttgacggcgccaattcctccacagattggacggctaagac 467 |||||||||||||||| |||||||| | |||||||| ||||||||||||||| | | || Sbjct: 452 tggatctccacaataacaagttgacaggaccaattcccccacagattggacggttgaaac 511 Query: 468 acctcaagatattgaacctgaggtggaataagcttcaa 505 | |||| ||||||||||||||||||||||||||||||| Sbjct: 512 atctcaggatattgaacctgaggtggaataagcttcaa 549 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 90 ccatggccgcggcgtcgttcgcccgc 115 |||||||||||||||||||||||||| Sbjct: 134 ccatggccgcggcgtcgttcgcccgc 159
>gb|BT016213.1| Zea mays clone Contig46 mRNA sequence Length = 1260 Score = 351 bits (177), Expect = 1e-93 Identities = 296/338 (87%) Strand = Plus / Plus Query: 168 gcaagacggtgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctgga 227 ||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||| Sbjct: 182 gcaagacggggaagagagacgtgaaagcattgaatgagatcaaatcttcactaggctgga 241 Query: 228 gagttgtctattcatgggtcggtgacgacccttgtggccatggtgaccttcccccctggt 287 ||||||| || |||||||||||||| || |||||||| |||||||| || |||||||||| Sbjct: 242 gagttgtatactcatgggtcggtgatgatccttgtgggcatggtgatctacccccctggt 301 Query: 288 ccggtgtcacatgtactcagcaaggggattacagagttgtcacggaactggaagtctatg 347 | ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 302 ctggtgtgacatgttctcagcaaggggattacagagttgtgacggaactggaagtctatg 361 Query: 348 ctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnc 407 |||| ||||||||||| || ||||| ||||| ||||| |||||| ||||| | Sbjct: 362 ctgtatcaatagttggccctttcccaacagcagtaactaacctgttggatctaagaagat 421 Query: 408 tggatctccacaataataagttgacggcgccaattcctccacagattggacggctaagac 467 |||||||||||||||| |||||||| | |||||||| ||||||||||||||| | | || Sbjct: 422 tggatctccacaataacaagttgacaggaccaattcccccacagattggacggttgaaac 481 Query: 468 acctcaagatattgaacctgaggtggaataagcttcaa 505 | |||| ||||||||||||||||||||||||||||||| Sbjct: 482 atctcaggatattgaacctgaggtggaataagcttcaa 519 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 90 ccatggccgcggcgtcgttcgcccgc 115 |||||||||||||||||||||||||| Sbjct: 104 ccatggccgcggcgtcgttcgcccgc 129
>dbj|AK059280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C11, full insert sequence Length = 1285 Score = 319 bits (161), Expect = 5e-84 Identities = 292/338 (86%) Strand = Plus / Plus Query: 167 ggcaagacggtgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctgg 226 ||||||||||| ||||| ||||||||||||||||||| |||||| ||||| |||| ||| Sbjct: 185 ggcaagacggtcaagagggacgtgaaagcattgaatgagatcaaatcttcgttaggatgg 244 Query: 227 agagttgtctattcatgggtcggtgacgacccttgtggccatggtgaccttcccccctgg 286 ||||||||||| |||||||| ||||| |||||||| || |||||||| || ||||||||| Sbjct: 245 agagttgtctactcatgggttggtgatgacccttgcgggcatggtgatctgcccccctgg 304 Query: 287 tccggtgtcacatgtactcagcaaggggattacagagttgtcacggaactggaagtctat 346 || ||||| || ||| |||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 305 tctggtgtgacctgttctcagcaaggagattacagagttgtcaccgaacttgaagtctat 364 Query: 347 gctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnn 406 ||||| |||||||| ||||| ||||||||||| || |||||||| ||||||| Sbjct: 365 gctgtatcaatagtcggtcctttccctacagcagttacaaaccttttggatttaaaaaga 424 Query: 407 ctggatctccacaataataagttgacggcgccaattcctccacagattggacggctaaga 466 ||||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||| | | Sbjct: 425 ttggatctacacaataacaagttgacagggcccattcccccacagattggacggctgaaa 484 Query: 467 cacctcaagatattgaacctgaggtggaataagcttca 504 ||||||| ||||||||||||||||||||| |||||||| Sbjct: 485 cacctcaggatattgaacctgaggtggaacaagcttca 522 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 tctcatatggtctcccgccgcgctccccgc 46 |||||||||||||||||| |||| |||||| Sbjct: 22 tctcatatggtctcccgcggcgcgccccgc 51
>dbj|AK121380.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127G18, full insert sequence Length = 2169 Score = 240 bits (121), Expect = 4e-60 Identities = 205/233 (87%) Strand = Plus / Plus Query: 167 ggcaagacggtgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctgg 226 ||||||||||| ||||| ||||||||||||||||||| |||||| ||||| |||| ||| Sbjct: 161 ggcaagacggtcaagagggacgtgaaagcattgaatgagatcaaatcttcgttaggatgg 220 Query: 227 agagttgtctattcatgggtcggtgacgacccttgtggccatggtgaccttcccccctgg 286 ||||||||||| |||||||| ||||| |||||||| || |||||||| || ||||||||| Sbjct: 221 agagttgtctactcatgggttggtgatgacccttgcgggcatggtgatctgcccccctgg 280 Query: 287 tccggtgtcacatgtactcagcaaggggattacagagttgtcacggaactggaagtctat 346 || ||||| || ||| |||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 281 tctggtgtgacctgttctcagcaaggagattacagagttgtcaccgaacttgaagtctat 340 Query: 347 gctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggattt 399 ||||| |||||||| ||||| ||||||||||| || |||||||| ||||||| Sbjct: 341 gctgtatcaatagtcggtcctttccctacagcagttacaaaccttttggattt 393 Score = 111 bits (56), Expect = 2e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 409 ggatctccacaataataagttgacggcgccaattcctccacagattggacggctaagaca 468 |||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||| | ||| Sbjct: 989 ggatctacacaataacaagttgacagggcccattcccccacagattggacggctgaaaca 1048 Query: 469 cctcaagatattgaacctgaggtggaataagcttca 504 ||||| ||||||||||||||||||||| |||||||| Sbjct: 1049 cctcaggatattgaacctgaggtggaacaagcttca 1084
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 155 bits (78), Expect = 2e-34 Identities = 132/150 (88%) Strand = Plus / Minus Query: 188 gtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtctattcatgggtc 247 |||||||||||||||| |||||| ||||| |||| |||||||||||||| |||||||| Sbjct: 5812397 gtgaaagcattgaatgagatcaaatcttcgttaggatggagagttgtctactcatgggtt 5812338 Query: 248 ggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtcacatgtactcag 307 ||||| |||||||| || |||||||| || ||||||||||| ||||| || ||| ||||| Sbjct: 5812337 ggtgatgacccttgcgggcatggtgatctgcccccctggtctggtgtgacctgttctcag 5812278 Query: 308 caaggggattacagagttgtcacggaactg 337 ||||| ||||||||||||||||| |||||| Sbjct: 5812277 caaggagattacagagttgtcaccgaactg 5812248 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 409 ggatctccacaataataagttgacggcgccaattcctccacagattggacggctaagaca 468 |||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||| | ||| Sbjct: 5810885 ggatctacacaataacaagttgacagggcccattcccccacagattggacggctgaaaca 5810826 Query: 469 cctcaagatattg 481 ||||| ||||||| Sbjct: 5810825 cctcaggatattg 5810813 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 338 gaagtctatgctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggat 397 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 5811541 gaagtctatgctgtatcaatagtcggtcctttccctacagcagttacaaaccttttggat 5811482 Query: 398 tt 399 || Sbjct: 5811481 tt 5811480 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 17 tctcatatggtctcccgccgcgctccccgc 46 |||||||||||||||||| |||| |||||| Sbjct: 5813091 tctcatatggtctcccgcggcgcgccccgc 5813062 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 gaacctgaggtggaataagcttca 504 ||||||||||||||| |||||||| Sbjct: 5810566 gaacctgaggtggaacaagcttca 5810543
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 155 bits (78), Expect = 2e-34 Identities = 132/150 (88%) Strand = Plus / Minus Query: 188 gtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtctattcatgggtc 247 |||||||||||||||| |||||| ||||| |||| |||||||||||||| |||||||| Sbjct: 41227 gtgaaagcattgaatgagatcaaatcttcgttaggatggagagttgtctactcatgggtt 41168 Query: 248 ggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtcacatgtactcag 307 ||||| |||||||| || |||||||| || ||||||||||| ||||| || ||| ||||| Sbjct: 41167 ggtgatgacccttgcgggcatggtgatctgcccccctggtctggtgtgacctgttctcag 41108 Query: 308 caaggggattacagagttgtcacggaactg 337 ||||| ||||||||||||||||| |||||| Sbjct: 41107 caaggagattacagagttgtcaccgaactg 41078 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 409 ggatctccacaataataagttgacggcgccaattcctccacagattggacggctaagaca 468 |||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||| | ||| Sbjct: 39715 ggatctacacaataacaagttgacagggcccattcccccacagattggacggctgaaaca 39656 Query: 469 cctcaagatattg 481 ||||| ||||||| Sbjct: 39655 cctcaggatattg 39643 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 338 gaagtctatgctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggat 397 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 40371 gaagtctatgctgtatcaatagtcggtcctttccctacagcagttacaaaccttttggat 40312 Query: 398 tt 399 || Sbjct: 40311 tt 40310 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 17 tctcatatggtctcccgccgcgctccccgc 46 |||||||||||||||||| |||| |||||| Sbjct: 41921 tctcatatggtctcccgcggcgcgccccgc 41892 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 gaacctgaggtggaataagcttca 504 ||||||||||||||| |||||||| Sbjct: 39396 gaacctgaggtggaacaagcttca 39373
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 155 bits (78), Expect = 2e-34 Identities = 132/150 (88%) Strand = Plus / Plus Query: 188 gtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtctattcatgggtc 247 |||||||||||||||| |||||| ||||| |||| |||||||||||||| |||||||| Sbjct: 18774 gtgaaagcattgaatgagatcaaatcttcgttaggatggagagttgtctactcatgggtt 18833 Query: 248 ggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtcacatgtactcag 307 ||||| |||||||| || |||||||| || ||||||||||| ||||| || ||| ||||| Sbjct: 18834 ggtgatgacccttgcgggcatggtgatctgcccccctggtctggtgtgacctgttctcag 18893 Query: 308 caaggggattacagagttgtcacggaactg 337 ||||| ||||||||||||||||| |||||| Sbjct: 18894 caaggagattacagagttgtcaccgaactg 18923 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 409 ggatctccacaataataagttgacggcgccaattcctccacagattggacggctaagaca 468 |||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||| | ||| Sbjct: 20286 ggatctacacaataacaagttgacagggcccattcccccacagattggacggctgaaaca 20345 Query: 469 cctcaagatattg 481 ||||| ||||||| Sbjct: 20346 cctcaggatattg 20358 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 338 gaagtctatgctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggat 397 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 19630 gaagtctatgctgtatcaatagtcggtcctttccctacagcagttacaaaccttttggat 19689 Query: 398 tt 399 || Sbjct: 19690 tt 19691 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 17 tctcatatggtctcccgccgcgctccccgc 46 |||||||||||||||||| |||| |||||| Sbjct: 18080 tctcatatggtctcccgcggcgcgccccgc 18109 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 gaacctgaggtggaataagcttca 504 ||||||||||||||| |||||||| Sbjct: 20605 gaacctgaggtggaacaagcttca 20628
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 155 bits (78), Expect = 2e-34 Identities = 132/150 (88%) Strand = Plus / Minus Query: 188 gtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtctattcatgggtc 247 |||||||||||||||| |||||| ||||| |||| |||||||||||||| |||||||| Sbjct: 5811610 gtgaaagcattgaatgagatcaaatcttcgttaggatggagagttgtctactcatgggtt 5811551 Query: 248 ggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtcacatgtactcag 307 ||||| |||||||| || |||||||| || ||||||||||| ||||| || ||| ||||| Sbjct: 5811550 ggtgatgacccttgcgggcatggtgatctgcccccctggtctggtgtgacctgttctcag 5811491 Query: 308 caaggggattacagagttgtcacggaactg 337 ||||| ||||||||||||||||| |||||| Sbjct: 5811490 caaggagattacagagttgtcaccgaactg 5811461 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 409 ggatctccacaataataagttgacggcgccaattcctccacagattggacggctaagaca 468 |||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||| | ||| Sbjct: 5810098 ggatctacacaataacaagttgacagggcccattcccccacagattggacggctgaaaca 5810039 Query: 469 cctcaagatattg 481 ||||| ||||||| Sbjct: 5810038 cctcaggatattg 5810026 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 338 gaagtctatgctgtgtcaatagttggtccattccctacagcggtaacaaacctgctggat 397 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 5810754 gaagtctatgctgtatcaatagtcggtcctttccctacagcagttacaaaccttttggat 5810695 Query: 398 tt 399 || Sbjct: 5810694 tt 5810693 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 17 tctcatatggtctcccgccgcgctccccgc 46 |||||||||||||||||| |||| |||||| Sbjct: 5812304 tctcatatggtctcccgcggcgcgccccgc 5812275 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 gaacctgaggtggaataagcttca 504 ||||||||||||||| |||||||| Sbjct: 5809779 gaacctgaggtggaacaagcttca 5809756
>ref|NM_125517.2| Arabidopsis thaliana protein binding AT5G61240 mRNA, complete cds Length = 1707 Score = 99.6 bits (50), Expect = 9e-18 Identities = 223/283 (78%) Strand = Plus / Plus Query: 177 tgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtct 236 ||||| |||| |||||||| ||||||| ||||| || || | || |||||||| || | Sbjct: 172 tgaagcgagatgtgaaagctttgaatgaaatcaaagcctctttgggatggagagtggtgt 231 Query: 237 attcatgggtcggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtca 296 |||||||||| |||||||| |||||||| |||| |||||||| || ||||| ||||||| Sbjct: 232 attcatgggttggtgacgatccttgtggagatggagaccttccaccttggtctggtgtca 291 Query: 297 catgtactcagcaaggggattacagagttgtcacggaactggaagtctatgctgtgtcaa 356 | ||| || ||||| || || ||||||||||| ||| | ||||| ||||| || || | Sbjct: 292 cgtgttctacacaaggagactatagagttgtcacagaattagaagtttatgcggtttcga 351 Query: 357 tagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnctggatctcc 416 | ||||| || ||||| | || ||||||||||| |||||||| |||||||| | Sbjct: 352 ttgttggacctttccccattgcagtaacaaaccttctggatttgactagactggatctac 411 Query: 417 acaataataagttgacggcgccaattcctccacagattggacg 459 | || || |||||||| | ||||| |||||||| |||||||| Sbjct: 412 ataacaacaagttgactggtccaatccctccacaaattggacg 454
>gb|BT000004.1| Arabidopsis thaliana Cf-5 disease resistance protein-like (At5g61240) mRNA, complete cds Length = 1060 Score = 99.6 bits (50), Expect = 9e-18 Identities = 223/283 (78%) Strand = Plus / Plus Query: 177 tgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtct 236 ||||| |||| |||||||| ||||||| ||||| || || | || |||||||| || | Sbjct: 74 tgaagcgagatgtgaaagctttgaatgaaatcaaagcctctttgggatggagagtggtgt 133 Query: 237 attcatgggtcggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtca 296 |||||||||| |||||||| |||||||| |||| |||||||| || ||||| ||||||| Sbjct: 134 attcatgggttggtgacgatccttgtggagatggagaccttccaccttggtctggtgtca 193 Query: 297 catgtactcagcaaggggattacagagttgtcacggaactggaagtctatgctgtgtcaa 356 | ||| || ||||| || || ||||||||||| ||| | ||||| ||||| || || | Sbjct: 194 cgtgttctacacaaggagactatagagttgtcacagaattagaagtttatgcggtttcga 253 Query: 357 tagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnctggatctcc 416 | ||||| || ||||| | || ||||||||||| |||||||| |||||||| | Sbjct: 254 ttgttggacctttccccattgcagtaacaaaccttctggatttgactagactggatctac 313 Query: 417 acaataataagttgacggcgccaattcctccacagattggacg 459 | || || |||||||| | ||||| |||||||| |||||||| Sbjct: 314 ataacaacaagttgactggtccaatccctccacaaattggacg 356
>gb|AY128350.1| Arabidopsis thaliana Cf-5 disease resistance protein-like (At5g61240) mRNA, complete cds Length = 1239 Score = 99.6 bits (50), Expect = 9e-18 Identities = 223/283 (78%) Strand = Plus / Plus Query: 177 tgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtct 236 ||||| |||| |||||||| ||||||| ||||| || || | || |||||||| || | Sbjct: 110 tgaagcgagatgtgaaagctttgaatgaaatcaaagcctctttgggatggagagtggtgt 169 Query: 237 attcatgggtcggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtca 296 |||||||||| |||||||| |||||||| |||| |||||||| || ||||| ||||||| Sbjct: 170 attcatgggttggtgacgatccttgtggagatggagaccttccaccttggtctggtgtca 229 Query: 297 catgtactcagcaaggggattacagagttgtcacggaactggaagtctatgctgtgtcaa 356 | ||| || ||||| || || ||||||||||| ||| | ||||| ||||| || || | Sbjct: 230 cgtgttctacacaaggagactatagagttgtcacagaattagaagtttatgcggtttcga 289 Query: 357 tagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnctggatctcc 416 | ||||| || ||||| | || ||||||||||| |||||||| |||||||| | Sbjct: 290 ttgttggacctttccccattgcagtaacaaaccttctggatttgactagactggatctac 349 Query: 417 acaataataagttgacggcgccaattcctccacagattggacg 459 | || || |||||||| | ||||| |||||||| |||||||| Sbjct: 350 ataacaacaagttgactggtccaatccctccacaaattggacg 392
>emb|BX832298.1|CNS09ZK1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH64ZB06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1113 Score = 99.6 bits (50), Expect = 9e-18 Identities = 223/283 (78%) Strand = Plus / Plus Query: 177 tgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtct 236 ||||| |||| |||||||| ||||||| ||||| || || | || |||||||| || | Sbjct: 135 tgaagcgagatgtgaaagctttgaatgaaatcaaagcctctttgggatggagagtggtgt 194 Query: 237 attcatgggtcggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtca 296 |||||||||| |||||||| |||||||| |||| |||||||| || ||||| ||||||| Sbjct: 195 attcatgggttggtgacgatccttgtggagatggagaccttccaccttggtctggtgtca 254 Query: 297 catgtactcagcaaggggattacagagttgtcacggaactggaagtctatgctgtgtcaa 356 | ||| || ||||| || || ||||||||||| ||| | ||||| ||||| || || | Sbjct: 255 cgtgttctacacaaggagactatagagttgtcacagaattagaagtttatgcggtttcga 314 Query: 357 tagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnctggatctcc 416 | ||||| || ||||| | || ||||||||||| |||||||| |||||||| | Sbjct: 315 ttgttggacctttccccattgcagtaacaaaccttctggatttgactagactggatctac 374 Query: 417 acaataataagttgacggcgccaattcctccacagattggacg 459 | || || |||||||| | ||||| |||||||| |||||||| Sbjct: 375 ataacaacaagttgactggtccaatccctccacaaattggacg 417
>emb|BX833156.1|CNS09Z6D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZG12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1203 Score = 99.6 bits (50), Expect = 9e-18 Identities = 223/283 (78%) Strand = Plus / Plus Query: 177 tgaagagagacgtgaaagcattgaatgggatcaaggcttcgctaggctggagagttgtct 236 ||||| |||| |||||||| ||||||| ||||| || || | || |||||||| || | Sbjct: 145 tgaagcgagatgtgaaagctttgaatgaaatcaaagcctctttgggatggagagtggtgt 204 Query: 237 attcatgggtcggtgacgacccttgtggccatggtgaccttcccccctggtccggtgtca 296 |||||||||| |||||||| |||||||| |||| |||||||| || ||||| ||||||| Sbjct: 205 attcatgggttggtgacgatccttgtggagatggagaccttccaccttggtctggtgtca 264 Query: 297 catgtactcagcaaggggattacagagttgtcacggaactggaagtctatgctgtgtcaa 356 | ||| || ||||| || || ||||||||||| ||| | ||||| ||||| || || | Sbjct: 265 cgtgttctacacaaggagactatagagttgtcacagaattagaagtttatgcggtttcga 324 Query: 357 tagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnctggatctcc 416 | ||||| || ||||| | || ||||||||||| |||||||| |||||||| | Sbjct: 325 ttgttggacctttccccattgcagtaacaaaccttctggatttgactagactggatctac 384 Query: 417 acaataataagttgacggcgccaattcctccacagattggacg 459 | || || |||||||| | ||||| |||||||| |||||||| Sbjct: 385 ataacaacaagttgactggtccaatccctccacaaattggacg 427
>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13 Length = 80376 Score = 69.9 bits (35), Expect = 8e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 224 tggagagttgtctattcatgggtcggtgacgacccttgtggccatggtgaccttcccccc 283 |||||||| || ||||||||||| |||||||| |||||||| |||| |||||||| || Sbjct: 509 tggagagtggtgtattcatgggttggtgacgatccttgtggagatggagaccttccacct 568 Query: 284 tggtccggtgtcacatgtactcagcaaggggattacagagttgtcac 330 ||||| |||||||| ||| || ||||| || || ||||||||||| Sbjct: 569 tggtctggtgtcacgtgttctacacaaggagactatagagttgtcac 615
>emb|BX829817.1|CNS0A1XV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB39ZE02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1348 Score = 58.0 bits (29), Expect = 3e-05 Identities = 177/226 (78%), Gaps = 2/226 (0%) Strand = Plus / Plus Query: 236 tattcatgggtcgg-tgacgacccttgtggccatggtgaccttcccccctgg-tccggtg 293 ||||||||||| || |||||| |||||||| |||| |||||||| || ||| || |||| Sbjct: 294 tattcatgggttggatgacgatccttgtggagatggagaccttccaccttgggtctggtg 353 Query: 294 tcacatgtactcagcaaggggattacagagttgtcacggaactggaagtctatgctgtgt 353 |||| ||| || ||||| || || ||||||||||| ||| | ||||| ||||| || | Sbjct: 354 tcacgtgttctacacaaggagactatagagttgtcacagaattagaagtttatgcggttt 413 Query: 354 caatagttggtccattccctacagcggtaacaaacctgctggatttnnnnnnnctggatc 413 | || ||||| || ||||| | || ||||||||||| |||||||| ||||||| Sbjct: 414 cgattgttggacctttccccattgcagtaacaaaccttctggatttgactagactggatc 473 Query: 414 tccacaataataagttgacggcgccaattcctccacagattggacg 459 | || || || |||||||| | ||||| |||||||| |||||||| Sbjct: 474 tacataacaacaagttgactggtccaatccctccacaaattggacg 519
>gb|AY040533.1| Gossypium hirsutum leucine-rich repeat resistance protein-like protein mRNA, complete cds Length = 1259 Score = 54.0 bits (27), Expect = 5e-04 Identities = 110/140 (78%) Strand = Plus / Plus Query: 320 agagttgtcacggaactggaagtctatgctgtgtcaatagttggtccattccctacagcg 379 |||||||| || ||| ||||||||||||| || ||||| |||||||| || |||| || Sbjct: 273 agagttgttaccgaattggaagtctatgcagtatcaattgttggtccttttcctattgcc 332 Query: 380 gtaacaaacctgctggatttnnnnnnnctggatctccacaataataagttgacggcgcca 439 ||||| || || ||||||| ||||||||||| || || ||| |||||| ||| Sbjct: 333 gtaactaatttgttggatttaacaaggctggatctccataacaacaagctgacgggccca 392 Query: 440 attcctccacagattggacg 459 |||||||| || |||||||| Sbjct: 393 attcctccccaaattggacg 412
>gb|AC165304.8| Mus musculus chromosome 1, clone RP23-138D5, complete sequence Length = 204924 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 aagatattgaacctgaggtggaat 496 |||||| ||||||||||||||||| Sbjct: 57420 aagataatgaacctgaggtggaat 57443
>ref|XM_482125.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1522 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cacctcccccttcccttctc 20 |||||||||||||||||||| Sbjct: 20 cacctcccccttcccttctc 39
>gb|AC111104.10| Mus musculus chromosome 3, clone RP23-187F18, complete sequence Length = 222158 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cacatgtactcagcaagggg 314 |||||||||||||||||||| Sbjct: 62349 cacatgtactcagcaagggg 62330
>gb|AC159028.3| Pan troglodytes BAC clone CH251-413M12 from chromosome unknown, complete sequence Length = 172935 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tgaagagagacgtgaaagca 196 |||||||||||||||||||| Sbjct: 78606 tgaagagagacgtgaaagca 78587
>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome Length = 615980 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ctggagagttgtctattcat 242 |||||||||||||||||||| Sbjct: 449988 ctggagagttgtctattcat 449969
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cacctcccccttcccttctc 20 |||||||||||||||||||| Sbjct: 18012857 cacctcccccttcccttctc 18012876
>gb|AC096753.5| Homo sapiens BAC clone RP11-458O14 from 2, complete sequence Length = 102620 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tggagagttgtctattcatg 243 |||||||||||||||||||| Sbjct: 75937 tggagagttgtctattcatg 75956
>dbj|AP005489.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0013H03 Length = 152998 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cacctcccccttcccttctc 20 |||||||||||||||||||| Sbjct: 97892 cacctcccccttcccttctc 97911
>dbj|AK099874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G22, full insert sequence Length = 1523 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cacctcccccttcccttctc 20 |||||||||||||||||||| Sbjct: 21 cacctcccccttcccttctc 40
>dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1090H08 Length = 200720 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cacctcccccttcccttctc 20 |||||||||||||||||||| Sbjct: 16653 cacctcccccttcccttctc 16672
>emb|X06525.1|MMIGVKPC Mouse Ig active L-chain(k) V-region: anti-phOx mRNA (NQ22.16L) Length = 309 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 ggccatggtgaccttcccccctgg 286 |||||||||||||||| ||||||| Sbjct: 66 ggccatggtgaccttctcccctgg 43
>gb|AC161927.11| Mus musculus chromosome 1, clone RP23-22I18, complete sequence Length = 223377 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 aagatattgaacctgaggtggaat 496 |||||| ||||||||||||||||| Sbjct: 217058 aagataatgaacctgaggtggaat 217081 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,319,333 Number of Sequences: 3902068 Number of extensions: 3319333 Number of successful extensions: 62366 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62211 Number of HSP's gapped (non-prelim): 155 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
