ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57a11 |
|---|---|
| Clone Library Name | barley_pub |
>TSC2_HUMAN (P49815) Tuberin (Tuberous sclerosis 2 protein)| Length = 1807 Score = 33.5 bits (75), Expect = 0.40 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +2 Query: 47 RLRSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQGY 187 + RS+ L + ++ GE RG G + +P SPSG++ +GY Sbjct: 1415 KARSQSGTLDGESAAWSASGEDSRGQPEGPLPSSSPRSPSGLRPRGY 1461
>K0310_HUMAN (O15027) Protein KIAA0310| Length = 2179 Score = 30.8 bits (68), Expect = 2.6 Identities = 34/139 (24%), Positives = 52/139 (37%) Frame = +2 Query: 68 PLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQGYGGVRFESQRFRLLSIVVGCF 247 PLP +T A H P GA V PAP + Q G V+ ES L + Sbjct: 498 PLPLNSTTEAVHMLPHAGAPPLDTVYPAPEKRPSARTQ--GPVKCESPATTLWAQSELPD 555 Query: 248 LISVTFLLSTRPDSIVFDTLSPKMAWLEEPRSAPARTAIKTVKPSSSFSSPRGLGRDFLV 427 L P ++ P+ ++ P A + + ++ S G+G + Sbjct: 556 FGGNVLLAPAAP--ALYVCAKPQPPVVQPPEEAMSGQQSRNPSSAAPVQSRGGIGASENL 613 Query: 428 DIAPKQGDAHGRQPQLSAG 484 + PK G+ Q Q S+G Sbjct: 614 ENPPKMGEEEALQSQASSG 632
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2160 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 12/62 (19%) Frame = +2 Query: 14 PASLISPYRRTR------LRSKLPPLPNPTTRFACH------GEPGRGAARGTVVRPAPS 157 P L SP R+ +RS+ PP+P P A + G PG +R + PAP Sbjct: 803 PRPLTSPLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPENGAPGPPVSRFPLEEPAPP 862 Query: 158 SP 163 P Sbjct: 863 GP 864
>DRD4_MOUSE (P51436) D(4) dopamine receptor (Dopamine D4 receptor) (D(2C)| dopamine receptor) Length = 387 Score = 30.4 bits (67), Expect = 3.4 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Frame = +2 Query: 65 PPLPNPTTRFACHGEP---------GRGAARGTVVRPAPSSPSGMKQQGYGGVRFESQRF 217 PPLP+ T + P G P P PS +++G E + Sbjct: 254 PPLPSLRTSPSDSSRPESELSQRPCSPGCLLADAALPQPPEPSSRRRRGAKITGRERKAM 313 Query: 218 RLLSIVVGCFLISVT 262 R+L +VVG FL+ T Sbjct: 314 RVLPVVVGAFLVCWT 328
>ZN342_HUMAN (Q8WUU4) Zinc finger protein 342| Length = 475 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Frame = +2 Query: 2 RKRPPASLISPYRRTRLRSKLPPLPN-----PTTRFACHGEPGRGAARGTVVRPAPSSPS 166 R+ PP S + S PP P PT+ C G G GAA V+ P +P Sbjct: 282 RQVPPQSPLMADTSQEQASAAPPEPAVHAAAPTSTLPCSGGEGAGAAATAGVQ-EPGAPG 340 Query: 167 GMKQQGYGG 193 Q G GG Sbjct: 341 SGAQAGPGG 349
>DPOL_ADE40 (P48311) DNA polymerase (EC 2.7.7.7)| Length = 1188 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 287 SIVFDTLSPKMAWLEEPRSAPARTAIKTVKPSSSFSSPR 403 ++VFD P++AWL E + A+ P S F +P+ Sbjct: 1031 NLVFDPKHPELAWLVECETVCAQCGADAYSPESVFLAPK 1069
>KCNQ2_HUMAN (O43526) Potassium voltage-gated channel subfamily KQT member 2| (Voltage-gated potassium channel subunit Kv7.2) (Neuroblastoma-specific potassium channel alpha subunit KvLQT2) (KQT-like 2) Length = 872 Score = 30.0 bits (66), Expect = 4.4 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 11/79 (13%) Frame = +2 Query: 11 PPASLISPYRRTRLRSKL------PPLPNPTTRFACHGE-----PGRGAARGTVVRPAPS 157 PP + + R + +S L PP P+P+ C G PGR + + ++ S Sbjct: 386 PPLNQLELLRNLKSKSGLAFRKDPPPEPSPSKGSPCRGPLCGCCPGRSSQKVSLKDRVFS 445 Query: 158 SPSGMKQQGYGGVRFESQR 214 SP G+ +G G + ++ R Sbjct: 446 SPRGVAAKGKGSPQAQTVR 464
>KCNH2_CANFA (Q9TSZ3) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (c-erg) (DERG) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1158 Score = 30.0 bits (66), Expect = 4.4 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = +2 Query: 11 PPASLISPYRRTRLRSKLPPLPNPTTR--FACHGEPGRGAARGTVVRPAPSSPS 166 PP S ++P R R KLP L TTR A G G A G VV SP+ Sbjct: 150 PPTSWLAPGRAKTFRLKLPALLALTTRESSARPGGVGSAGAPGAVVVDVDLSPA 203
>TILS_TROW8 (Q83I94) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 407 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 357 VLAGALRGSSSHAILGL-SVSKTMESGRVERRKVTEMRKQPTTMDSSRKRCDSNRTPP*P 181 VL G +RGS ++ G+ +VS T E R K ++ R CDS PP P Sbjct: 142 VLLGLMRGSGPSSLRGMKAVSYTPEDCRYMNNKACNSVTAVYAHNTQRCSCDSRPYPPPP 201
>SNT2_SCHPO (Q10077) Lid2 complex component snt2 (Lid2C component snt2)| Length = 1131 Score = 29.6 bits (65), Expect = 5.8 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -2 Query: 180 CCFMPDGDDGAGRTTVPLAAPLPGSPWHAKRVVGF 76 CC +P+G+ V + +P PG P+ R++ F Sbjct: 96 CCVLPNGELIQPNDFVLVNSPFPGEPFQIARIISF 130
>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)| Length = 317 Score = 29.6 bits (65), Expect = 5.8 Identities = 19/57 (33%), Positives = 23/57 (40%) Frame = +2 Query: 35 YRRTRLRSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQGYGGVRFE 205 Y R + P P P GEPG G A G RP P G ++G G + E Sbjct: 133 YHSNRNQPGPPGPPGPPGAAGARGEPGPGGAPGFPGRPGVQGPPG--ERGLPGEKGE 187
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.3 bits (64), Expect = 7.6 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Frame = -2 Query: 348 GALRGSSSHAILGLSVSKTMESGRVERRKV---TEMRKQPTTMDSSRKRCDSNRTPP*PC 178 G++ +SS L S+ +G E+ + T + K P+T S R S+ P Sbjct: 1131 GSIPSASSPTSPALPRSEPPPAGPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPT 1190 Query: 177 CFMPDGDDGAGR--TTVPLAAPLPGSP 103 PDG G G + P +P+P SP Sbjct: 1191 --QPDGAGGGGSSPSPAPATSPVPPSP 1215
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 281 PDSIVFDTLSPKMAWLEEPRSAPARTAIKTVKPSSSFSSPRGLG 412 PD ++ + PK+ L+E S ++T++P S SP G G Sbjct: 507 PDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAG 550
>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 940 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 281 PDSIVFDTLSPKMAWLEEPRSAPARTAIKTVKPSSSFSSPRGLG 412 PD ++ + PK+ L+E S ++T++P S SP G G Sbjct: 507 PDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAG 550
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 29.3 bits (64), Expect = 7.6 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 281 PDSIVFDTLSPKMAWLEEPRSAPARTAIKTVKPSSSFSSPRGLG 412 PD ++ + PK+ L+E S ++T++P S SP G G Sbjct: 507 PDPEPYEPIPPKLIPLDEECSMDETPYVETLEPGGSGGSPDGAG 550
>BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing protein 3| Length = 1205 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +2 Query: 308 SPKMAWLEEPRSAPARTAIKTVKPSSSFSSPRGLGRDFLVDIAPKQ 445 +P ++ E P P I KP S F PR + D L++ +P Q Sbjct: 844 APSLSEQESPPEPPTLKPINDSKPPSRFLKPRKVEEDELLEKSPLQ 889
>TAU_PONPY (Q5S6V2) Microtubule-associated protein tau| Length = 757 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 525 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSSAKSR 558
>TAU_MOUSE (P10637) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 732 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 500 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSASKSR 533
>TAU_HUMAN (P10636) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 757 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 525 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSSAKSR 558
>TAU_SPECI (Q6TS35) Microtubule-associated protein tau| Length = 429 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 197 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSSTKSR 230
>TAU_PANTR (Q5YCW1) Microtubule-associated protein tau| Length = 775 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 543 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSSAKSR 576
>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau| Length = 775 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 543 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSSAKSR 576
>TAU_GORGO (Q5YCW0) Microtubule-associated protein tau| Length = 775 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 543 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSSAKSR 576
>TAU_CAPHI (O02828) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 402 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 170 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSAAKSR 203
>SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific protease 3) (Smt3-specific isopeptidase 1) (Smt3ip1) Length = 568 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +2 Query: 14 PASLISPYRRTRLRSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAP 154 P + S RR RLR LPP P + +PG G T PAP Sbjct: 18 PGTTYSNPRRERLRWPLPPKPRLKSGGGFGPDPGSGTTVPTRRLPAP 64
>TAU_BOVIN (P29172) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 447 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 215 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSAAKSR 248
>GCC_RAT (P20762) Ig gamma-2C chain C region| Length = 329 Score = 28.9 bits (63), Expect = 9.9 Identities = 21/66 (31%), Positives = 28/66 (42%) Frame = -2 Query: 309 LSVSKTMESGRVERRKVTEMRKQPTTMDSSRKRCDSNRTPP*PCCFMPDGDDGAGRTTVP 130 LS S T+ S + VT P T + KR + R P P + DD GR +V Sbjct: 64 LSSSVTVPSSTWSSQTVTCSVAHPATKSNLIKRIEPRRPKPRPPTDICSCDDNLGRPSVF 123 Query: 129 LAAPLP 112 + P P Sbjct: 124 IFPPKP 129
>HN_NDVM (P12557) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 571 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = -2 Query: 357 VLAGALRGSSSHAILGLSVSKTMESGRVERRKVTEMRKQPTTMDSSRKRCDSNRTP 190 +L+G S SH L L V +T +GRV + + T +RK C + TP Sbjct: 192 ILSGCRDHSQSHQYLALGVLRTSATGRVFFSTLRSINLDDT---QNRKSCSVSATP 244
>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 28.9 bits (63), Expect = 9.9 Identities = 21/62 (33%), Positives = 23/62 (37%) Frame = +2 Query: 14 PASLISPYRRTRLRSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQGYGG 193 P I P+ R K P LP G PG+ GT PS P G GY G Sbjct: 662 PQGAIGPHGEKGARGK-PGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQG--PLGYPG 718 Query: 194 VR 199 R Sbjct: 719 PR 720
>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 751 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +2 Query: 53 RSKLPPLPNPTTRFACHGEPGRGAARGTVVRPAPSSPSGMKQQ 181 RS+ P LP P TR EP + A VVR P SPS K + Sbjct: 519 RSRTPSLPTPPTR-----EPKKVA----VVRTPPKSPSASKSR 552 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,623,584 Number of Sequences: 219361 Number of extensions: 1020465 Number of successful extensions: 4910 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4896 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
