ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57a10 |
|---|---|
| Clone Library Name | barley_pub |
>TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2| Length = 906 Score = 38.5 bits (88), Expect = 0.011 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Frame = -3 Query: 442 GSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSPPMGIPADCDGGKRR---KLGISE 272 G R RR + + EG+ R Q K+ SP G P G+RR +LG E Sbjct: 28 GDRLGRRSSSKRALKAEGTPGRRGAQRSQKERAGGSPSPGSPRRKQTGRRRHREELGEQE 87 Query: 271 WGSADSWAFQPCRRDCEARKRSFMGGLWPEREARNKRAKK 152 G A+ R CE R++ + ER A KR K+ Sbjct: 88 RGEAE--------RTCEGRRKRDERASFQERTAAPKREKE 119
>CAC1E_RABIT (Q02343) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2259 Score = 32.3 bits (72), Expect = 0.80 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Frame = -3 Query: 427 RRPRNLESRNVEGSGNRGCDQEPVKKGGARSPPMGIPADCDGGKRRKLGISEWGSADSWA 248 RRPR +E + G C++E V +GG+ + DC +R L + W Sbjct: 828 RRPRPMEGLAL---GLEKCEEEHVSRGGSLKGAL----DC---QRSPLSLGR--REPPWL 875 Query: 247 FQPCRRDCEARKRSFMGG---LWPEREARNKRAKKSCSH 140 +PC +CE + GG + E AR++++++ H Sbjct: 876 ARPCHGNCEPALQETAGGETVVTFEDRARHRQSQRRSRH 914
>CAC1E_RAT (Q07652) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (RBE-II) (RBE2) (Brain calcium channel II) (BII) Length = 2222 Score = 32.3 bits (72), Expect = 0.80 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Frame = -3 Query: 427 RRPRNLESRNVEGSGNRGCDQEPVKKGGARSPPMGIPADCDGGKRRKLGISEWGSADSWA 248 RRPR +E + G G C++E + +GG+ +G +R L + + W Sbjct: 779 RRPRPIEGLAL-GLGLEKCEEERISRGGSLKGDIGGLTSVLDNQRSPLSLGK--REPPWL 835 Query: 247 FQPCRRDCEARKRSFMGG---LWPEREARNKRAKKSCSH 140 + C +C+ ++ GG + E AR++++++ H Sbjct: 836 PRSCHGNCDPTQQETGGGETVVTFEDRARHRQSQRRSRH 874
>CAC1E_MOUSE (Q61290) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2272 Score = 32.0 bits (71), Expect = 1.0 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Frame = -3 Query: 427 RRPRNLESRNVEGSGNRGCDQEPVKKGGARSPPMGIPADCDGGKRRKLGISEWGSADSWA 248 RRPR +E + G G C++E + +GG+ +G +R L + + W Sbjct: 829 RRPRPIEGLAL-GLGLEKCEEERISRGGSLKGDIGGLTSALDNQRSPLSLGK--REPPWL 885 Query: 247 FQPCRRDCEARKRSFMGG---LWPEREARNKRAKKSCSH 140 + C +C+ ++ GG + E AR++++++ H Sbjct: 886 PRSCHGNCDPIQQEAGGGETVVTFEDRARHRQSQRRSRH 924
>ODP2_NEUCR (P20285) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (PDC-E2) (MRP3) Length = 458 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 451 ARPGSRTARRPRNLESRNVEGSGNRG-CDQEPVKKGGARSPPMGIPA 314 A P ++ R + ++ RNV+GSG G +E VKK A +P G A Sbjct: 178 ALPAAKRLAREKGIDLRNVKGSGPGGKITEEDVKKALASAPAAGAAA 224
>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 932 Score = 31.6 bits (70), Expect = 1.4 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -1 Query: 246 SNPVDEIVRREKGALWEVYGQSVKQEIKG 160 + PV ++ EKG WEVYG S++ E+ G Sbjct: 829 TEPVRDVSWDEKGMTWEVYGASMEVEVLG 857
>CD320_HUMAN (Q9NPF0) CD320 antigen precursor (8D6 antigen) (FDC-signaling| molecule 8D6) (FDC-SM-8D6) Length = 282 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Frame = -3 Query: 394 EGSGNRGCDQEPVKKGGARSPPMGIP------ADCDGGKRRKL 284 +GS C EP + G PP G+P +DC GG +KL Sbjct: 82 DGSDEEECRIEPCTQKGQCPPPPGLPCPCTGVSDCSGGTDKKL 124
>SRPR_CANFA (P06625) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 31.2 bits (69), Expect = 1.8 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = -1 Query: 396 SRGQETGDAIKNRSKKGELAHLRWGFLRIATEENAESSGSRSGALQILGLSNPVDEIVRR 217 +RG++ + KN KKG G L AE SG +G + LS +E++RR Sbjct: 155 TRGEKPKEKAKNSKKKGAKKESSDGPLATGKAVPAEKSGLPAGPENGVELSK--EELIRR 212 Query: 216 EKGALWEVYGQSVKQEIKGRRN 151 ++ + +G+ +++ K ++ Sbjct: 213 KREEFIQKHGRGLEKSSKSTKS 234
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 30.4 bits (67), Expect = 3.0 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 8/101 (7%) Frame = -1 Query: 429 HG--GRETLNQETSRGQETGDAIKNRSKKGELAHLRWGFLRIATEENAESSGSRSGALQI 256 HG G + +++T +++GD ++ + R G R + ES+GS++ Q Sbjct: 1532 HGQSGPRSASRQTRNEEQSGDGSRHSGSRHHEPSTRAGSSRHSQVGQGESAGSKTSRRQG 1591 Query: 255 LGLSNPVD------EIVRREKGALWEVYGQSVKQEIKGRRN 151 +S D + RR + A YG + +Q G RN Sbjct: 1592 SSVSQDRDSEGHSEDSERRSESASRNHYGSAREQSRHGSRN 1632
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 30.4 bits (67), Expect = 3.0 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 246 SNPVDEIVRREKGALWEVYGQSVKQEIKG 160 + PV ++ EKG WEVYG +++ E+ G Sbjct: 907 AEPVRDVSWDEKGMTWEVYGAAMEVEVLG 935
>GRIN2_CHICK (Q9PWA3) GRIN2-like protein (G protein-regulated inducer of neurite| outgrowth 2-like protein) (G(o) alpha-interacting protein 6) Length = 518 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 243 NPVDEIVRREKGALWEVYGQSVKQEIKG 160 +PV E+ ++G WEVYG SV E+ G Sbjct: 425 SPVREVRWDDEGMTWEVYGASVDPEVLG 452
>PRGC1_MOUSE (O70343) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 797 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 445 PGSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSP 332 P S ++RP+ + SR+ S +R C + P + +RSP Sbjct: 553 PKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSP 590
>PRGC1_HUMAN (Q9UBK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) (Ligand effect modulator 6) Length = 798 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 445 PGSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSP 332 P S ++RP+ + SR+ S +R C + P + +RSP Sbjct: 554 PKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSP 591
>PRGC1_RAT (Q9QYK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 445 PGSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSP 332 P S ++RP+ + SR+ S +R C + P + +RSP Sbjct: 552 PKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSP 589
>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 445 PGSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSP 332 P S ++RP+ + SR+ S +R C + P + +RSP Sbjct: 552 PKSLFSQRPQRMRSRSRSFSQHRSCSRSPYSRSRSRSP 589
>PRGC1_BOVIN (Q865B7) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 445 PGSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSP 332 P S ++RP+ + SR+ S +R C + P + +RSP Sbjct: 553 PKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSP 590
>CS016_HUMAN (Q8ND99) Protein C19orf16| Length = 567 Score = 30.0 bits (66), Expect = 4.0 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%) Frame = +3 Query: 183 SGHKPPIKLLFLASQSRR------QGWKAQESAEPHSEIPSFLRFPPSQSAGIPIGGERA 344 SG K FL QS++ WK P + P+ PP ++ +P ++A Sbjct: 57 SGPVTSCKAPFLVDQSQKLPAVPASSWKPPPGLAPPQKAPA-ASAPPRKAPAVPAPSQKA 115 Query: 345 PPFLTGS*SHPRFPDPS 395 P S P P PS Sbjct: 116 PAVPAPSQKAPAIPAPS 132
>OR4DB_HUMAN (Q8NGI4) Olfactory receptor 4D11| Length = 311 Score = 30.0 bits (66), Expect = 4.0 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = +1 Query: 142 ESKISSPFYFLLHALAI-NLP*SSFFSPHNLVDRVGKPKNLQSPTPRSRAFCVFL 303 ES++ +P YFLL LAI ++ SS +P L+D + K K + + ++ F L Sbjct: 52 ESRLHTPMYFLLRNLAILDICFSSTTAPKVLLDLLSKKKTISYTSCMTQIFLFHL 106
>OR4DA_HUMAN (Q8NGI6) Olfactory receptor 4D10 (Olfactory receptor OR11-251)| Length = 311 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Frame = +1 Query: 142 ESKISSPFYFLLHALAI-NLP*SSFFSPHNLVDRVGKPKNL 261 ES++ +P YFLLH L+I ++ SS P LVD + + K + Sbjct: 52 ESRLHTPMYFLLHNLSIADICFSSITVPKVLVDLLSERKTI 92
>OR4D2_HUMAN (P58180) Olfactory receptor 4D2 (Olfactory receptor OR17-24)| (B-lymphocyte membrane protein BC2009) Length = 307 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = +1 Query: 139 SESKISSPFYFLLHALAI-NLP*SSFFSPHNLVDRVGKPKNL 261 S+S++ +P YFLL LA+ +L SS +P LVD + + K + Sbjct: 51 SDSQLHTPMYFLLRNLAVLDLCFSSVTAPKMLVDLLSEKKTI 92
>FIBC_LUMRU (P83298) Fibrinolytic enzyme, isozyme C (EC 3.4.21.-) (F-II)| Length = 242 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 382 NRGCDQEPVKKGGARSPPMGIPADCDGGKRRKLGISEW 269 N C Q+P GA + G P +C G R +G++ W Sbjct: 173 NHICVQDPAGNTGACNGDSGGPLNCPDGGTRVVGVTSW 210
>GCL_ECOLI (P0AEP7) Glyoxylate carboligase (EC 4.1.1.47)| (Tartronate-semialdehyde synthase) Length = 592 Score = 29.6 bits (65), Expect = 5.2 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Frame = -3 Query: 442 GSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSPPMGIPADCDGGKRRKLGISEWGS 263 G+R A R + EG D EP + G P +GI +D + +++ Sbjct: 277 GNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ--E 334 Query: 262 ADSWAFQPCRR----DCEARKRSFM 200 PCR+ DC+ RKR+ + Sbjct: 335 MQKAGRLPCRKEWVADCQQRKRTLL 359
>GCL_ECO57 (P0AEP8) Glyoxylate carboligase (EC 4.1.1.47)| (Tartronate-semialdehyde synthase) Length = 592 Score = 29.6 bits (65), Expect = 5.2 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Frame = -3 Query: 442 GSRTARRPRNLESRNVEGSGNRGCDQEPVKKGGARSPPMGIPADCDGGKRRKLGISEWGS 263 G+R A R + EG D EP + G P +GI +D + +++ Sbjct: 277 GNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ--E 334 Query: 262 ADSWAFQPCRR----DCEARKRSFM 200 PCR+ DC+ RKR+ + Sbjct: 335 MQKAGRLPCRKEWVADCQQRKRTLL 359
>M3K3_MOUSE (Q61084) Mitogen-activated protein kinase kinase kinase 3 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 3) (MEK kinase 3) (MEKK 3) Length = 626 Score = 29.6 bits (65), Expect = 5.2 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +3 Query: 132 LRK*EQDFFALLFLASRSGHKPPIKLLFLASQSRRQGWKAQESAEPHSEIPSFLRFPPSQ 311 L K + D + + RS +++L L SQ R S+ PHS + +R PSQ Sbjct: 93 LLKNQDDLDKAIDILDRSSSMKSLRILLL-SQDRNH-----TSSSPHSGVSRQVRIKPSQ 146 Query: 312 SAG 320 SAG Sbjct: 147 SAG 149
>M3K3_HUMAN (Q99759) Mitogen-activated protein kinase kinase kinase 3 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 3) (MEK kinase 3) (MEKK 3) Length = 626 Score = 29.6 bits (65), Expect = 5.2 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +3 Query: 132 LRK*EQDFFALLFLASRSGHKPPIKLLFLASQSRRQGWKAQESAEPHSEIPSFLRFPPSQ 311 L K + D + + RS +++L L SQ R S+ PHSE+ +R SQ Sbjct: 93 LLKNQDDLDKAIDILDRSSSMKSLRILLL-SQDRNHN-----SSSPHSEVSRQVRIKASQ 146 Query: 312 SAG 320 SAG Sbjct: 147 SAG 149
>CAC1E_HUMAN (Q15878) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2312 Score = 29.3 bits (64), Expect = 6.8 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%) Frame = -3 Query: 427 RRPRNLESRNVEGSGNRGCDQEPVKKGGARSPPMGIPADCDGGKRRKLGISEWGSADSWA 248 RRPR +E G ++E + +GG+ G + +R L + + W Sbjct: 828 RRPRAIEGW--PGLALEKFEEERISRGGSLKGDGGDRSSALDNQRTPLSLGQ--REPPWL 883 Query: 247 FQPCRRDCEARKRSFMGG---LWPEREARNKRAKKSCSH 140 +PC +C+ ++ GG + E AR++++++ H Sbjct: 884 ARPCHGNCDPTQQEAGGGEAVVTFEDRARHRQSQRRSRH 922
>UVH1_ARATH (Q9LKI5) DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet| hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog) Length = 956 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 252 GLSNPVDEIVRREKGALWEVYGQSVKQEIKGRRNL 148 GL DEIVRR+ +W G+ KQ + + L Sbjct: 246 GLFKSFDEIVRRQLDPIWHTLGKRTKQLVSDLKTL 280
>SRPR_HUMAN (P08240) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 638 Score = 29.3 bits (64), Expect = 6.8 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = -1 Query: 396 SRGQETGDAIKNRSKKGELAHLRWGFLRIATEENAESSGSRSGALQILGLSNPVDEIVRR 217 +RG++ + KN KKG G L + AE SG G + LS +E++RR Sbjct: 155 TRGEKPKEKAKNSKKKGAKKEGSDGPLATSKPVPAEKSGLPVGPENGVELSK--EELIRR 212 Query: 216 EKGALWEVYGQSVKQEIKGRRN 151 ++ + +G+ +++ K ++ Sbjct: 213 KREEFIQKHGRGMEKSNKSTKS 234
>SRPR_MOUSE (Q9DBG7) Signal recognition particle receptor alpha subunit| (SR-alpha) (Docking protein alpha) (DP-alpha) Length = 636 Score = 28.9 bits (63), Expect = 8.9 Identities = 21/82 (25%), Positives = 41/82 (50%) Frame = -1 Query: 396 SRGQETGDAIKNRSKKGELAHLRWGFLRIATEENAESSGSRSGALQILGLSNPVDEIVRR 217 +RG++T + KN K+G G L + AE SG +G + LS +E++RR Sbjct: 155 TRGEKTKEKAKNNKKRGAKKEGSDGTLATSKTAPAEKSGLSAGP-ENGELSK--EELIRR 211 Query: 216 EKGALWEVYGQSVKQEIKGRRN 151 ++ + +G+ + + K ++ Sbjct: 212 KREEFIQKHGKGLDKSSKSTKS 233
>PROA_CORJK (Q4JWT3) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 434 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 Query: 285 SGSRSGALQILGLSNPVDEIVR 220 SG G Q++GLS+PV EIVR Sbjct: 94 SGIAGGLRQVIGLSDPVGEIVR 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,046,059 Number of Sequences: 219361 Number of extensions: 1688745 Number of successful extensions: 5595 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5590 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
