>FDH_HORVU (Q9ZRI8) Formate dehydrogenase, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH)
          Length = 377

 Score =  235 bits (599), Expect = 4e-62
 Identities = 115/119 (96%), Positives = 116/119 (97%)
 Frame = +3

Query: 96  MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 275
           MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD
Sbjct: 1   MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 60

Query: 276 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTA 452
           WLESKGHHYIVTDDKEG NSELEKHIEDMHVLITTPFHPAYVTAE+IKKAK  ELLLTA
Sbjct: 61  WLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTA 119

>FDH1_ORYSA (Q9SXP2) Formate dehydrogenase 1, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase 1) (FDH 1)
          Length = 376

 Score =  223 bits (569), Expect = 1e-58
 Identities = 108/117 (92%), Positives = 113/117 (96%)
 Frame = +3

Query: 102 AMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWL 281
           AMWRAAA  L+ RA+GSRAAHTSAGSKKIVGVFY+ GEYADKNPNFVGCVEGALGIR+WL
Sbjct: 2   AMWRAAAGHLLGRALGSRAAHTSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWL 61

Query: 282 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTA 452
           ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYV+AERIKKAKNLELLLTA
Sbjct: 62  ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTA 118

>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2)
          Length = 378

 Score =  201 bits (510), Expect = 9e-52
 Identities = 99/119 (83%), Positives = 106/119 (89%), Gaps = 2/119 (1%)
 Frame = +3

Query: 102 AMWRA--AARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 275
           AMWRA  AA QL+ RA+ S AA TSAGSKK+VGVFY+ GEYADKNPNFVGCV+ ALGIR 
Sbjct: 2   AMWRAPSAAGQLLGRALASTAAQTSAGSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRG 61

Query: 276 WLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTA 452
           WLESKGH YIVTDDKEG+N ELEKHIED HVLITTPFHPAY+TAERIKKAKNLELLLTA
Sbjct: 62  WLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTA 120

>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH)
          Length = 384

 Score =  165 bits (418), Expect = 4e-41
 Identities = 79/96 (82%), Positives = 87/96 (90%)
 Frame = +3

Query: 165 TSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELE 344
           +S  SKKIVGVFY+A EYA KNPNF+GCVE ALGIRDWLES+GH YIVTDDKEG + ELE
Sbjct: 31  SSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELE 90

Query: 345 KHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTA 452
           KHI D+HVLI+TPFHPAYVTAERIKKAKNL+LLLTA
Sbjct: 91  KHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTA 126

>FDH_SOLTU (Q07511) Formate dehydrogenase, mitochondrial precursor (EC|
           1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH)
          Length = 381

 Score =  164 bits (414), Expect = 1e-40
 Identities = 82/123 (66%), Positives = 97/123 (78%), Gaps = 2/123 (1%)
 Frame = +3

Query: 90  VSMAAMWRAAARQLVDRA--VGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGAL 263
           ++M+ +   AAR +   +  V +R    S G KKIVGVFY+A EYA+ NPNF+GC E AL
Sbjct: 1   MAMSRVASTAARAITSPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENAL 60

Query: 264 GIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELL 443
           GIR+WLESKGH YIVT DKEG + ELEKHI D+HVLI+TPFHPAYVTAERIKKAKNL+LL
Sbjct: 61  GIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLL 120

Query: 444 LTA 452
           LTA
Sbjct: 121 LTA 123

>FDH_PICAN (P33677) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate|
           dehydrogenase) (FDH)
          Length = 361

 Score =  114 bits (285), Expect = 1e-25
 Identities = 54/90 (60%), Positives = 65/90 (72%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 362
           K+V V Y AG++A       GC E ALGIRDWLE +GH  +VT DKEG NS LEK+I D 
Sbjct: 1   KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDA 60

Query: 363 HVLITTPFHPAYVTAERIKKAKNLELLLTA 452
            V+I+TPFHPAY+T ERI KAK L+LL+ A
Sbjct: 61  DVIISTPFHPAYITKERIDKAKKLKLLVVA 90

>FDH_NEUCR (Q07103) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate|
           dehydrogenase) (FDH)
          Length = 375

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 41/90 (45%), Positives = 63/90 (70%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDM 362
           K++ V Y  G++ ++ P  +G ++  LG+R WLE +GH  + T DK+G NS  +K +ED 
Sbjct: 3   KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDA 62

Query: 363 HVLITTPFHPAYVTAERIKKAKNLELLLTA 452
            ++ITTPFHP Y+TAER+ +AK L+L +TA
Sbjct: 63  EIIITTPFHPGYLTAERLARAKKLKLAVTA 92

>FDH_EMENI (Q03134) Probable formate dehydrogenase (EC 1.2.1.2) (NAD-dependent|
           formate dehydrogenase) (FDH)
          Length = 377

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 44/86 (51%), Positives = 57/86 (66%)
 Frame = +3

Query: 195 VFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLI 374
           V Y  G +A   P  +G  E  LGIR W+E +GH  + T DK+G NS  +K + D  V+I
Sbjct: 2   VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVII 61

Query: 375 TTPFHPAYVTAERIKKAKNLELLLTA 452
           TTPFHP Y+TAER+ KAKNL+L +TA
Sbjct: 62  TTPFHPGYLTAERLAKAKNLKLAVTA 87

>FDH_PSESR (P33160) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate|
           dehydrogenase) (FDH)
          Length = 400

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 51/71 (71%)
 Frame = +3

Query: 240 VGCVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVTAERIK 419
           +G V G LG+R +LES GH  +VT DK+G +S  E+ + D  V+I+ PF PAY+T ERI 
Sbjct: 50  LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIA 109

Query: 420 KAKNLELLLTA 452
           KAKNL+L LTA
Sbjct: 110 KAKNLKLALTA 120

>FDH2_YEAST (Q08987) Formate dehydrogenase 2 (EC 1.2.1.2) (NAD-dependent|
           formate dehydrogenase 2)
          Length = 376

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 35/91 (38%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKE-GLNSELEKHIED 359
           K++ V Y+ G++A++    +GC+E  LGIR+++E +G+  + T DK+    S +++ ++D
Sbjct: 5   KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64

Query: 360 MHVLITTPFHPAYVTAERIKKAKNLELLLTA 452
             ++ITTPF PAY++  RI +A NL+L +TA
Sbjct: 65  AEIVITTPFFPAYISRNRIAEAPNLKLCVTA 95

>FDH1_YEAST (Q08911) Formate dehydrogenase 1 (EC 1.2.1.2) (NAD-dependent|
           formate dehydrogenase 1)
          Length = 376

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 35/91 (38%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
 Frame = +3

Query: 183 KIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKE-GLNSELEKHIED 359
           K++ V Y+ G++A++    +GC+E  LGIR+++E +G+  + T DK+    S +++ ++D
Sbjct: 5   KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64

Query: 360 MHVLITTPFHPAYVTAERIKKAKNLELLLTA 452
             ++ITTPF PAY++  RI +A NL+L +TA
Sbjct: 65  AEIVITTPFFPAYISRNRIAEAPNLKLCVTA 95

>MOAB_STAAW (Q8NV99) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAS (Q6G747) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAN (P99137) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAM (P65406) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>MOAB_STAAC (Q5HDT2) Molybdenum cofactor biosynthesis protein B|
          Length = 168

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 246 CVEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHI-EDMHVLITT 380
           CV   L   D   S  H+ IV D+K  + ++++K + ED+ V+ITT
Sbjct: 34  CVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITT 79

>TCPE_ARATH (O04450) T-complex protein 1 subunit epsilon (TCP-1-epsilon)|
           (CCT-epsilon)
          Length = 535

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 249 VEGALGIRDWLESKGHHYIVTDDKEGLNSELEKHIEDMHV-LITTPFHP 392
           VEG +G +  LE     Y +  DK+  + ++ K IED H+ ++T PF P
Sbjct: 207 VEGKVGGK--LEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEP 253

>MIA40_CANGA (Q6FW26) Intermembrane space import and assembly protein 40,|
           mitochondrial precursor (Mitochondrial import inner
           membrane translocase TIM40)
          Length = 404

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +3

Query: 216 YADKNPNFVGCVEGALGIRDWLESKGHHYI--VTDDKEGLNSELEKHI---EDMHVLITT 380
           Y++  P  + CVE    ++D       HY   + D  +  N + EK++   +D  V  T 
Sbjct: 315 YSEAEPKGIDCVEKFQHMQDCFRRYPEHYAEQLADPADDENVDHEKNLSEGKDTGVDSTP 374

Query: 381 PFHPAYVTAERIKK 422
           P   AY+  E+ KK
Sbjct: 375 PKDEAYLKTEKEKK 388

>Y169_METJA (Q57633) Hypothetical ATP-binding protein MJ0169|
          Length = 263

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 300 YIVTDDKEGLNSELEKH--IEDMHVLITTPFHPAYVTAERIKKAKNL 434
           Y++ D   GLN E+  H  I D  +L+ TP   + + A R+K++  +
Sbjct: 114 YVIIDAPAGLNREMATHLAIADKLLLVVTPEMFSIIDAVRLKESAEM 160

>NHR6_CAEEL (P41829) Nuclear hormone receptor family member nhr-6 (Cnr8)|
          Length = 619

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 256 PSTQPTKLGFLSAY-SPAW*NTPTIFLLPADVCAALDPTARSTSCLAAALHIAAMETEGS 80
           P++ P   GFL ++ +P   +TPT F +P++     D      +  A  LH  A   EG 
Sbjct: 229 PTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETALDADKMCAVCNDRAVCLHYGARTCEGC 288

Query: 79  R 77
           +
Sbjct: 289 K 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,488,151
Number of Sequences: 219361
Number of extensions: 1030634
Number of successful extensions: 3458
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3452
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)