ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57a06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D88272.1| Hordeum vulgare mRNA for formate dehydrogenase, complete cds Length = 1380 Score = 779 bits (393), Expect = 0.0 Identities = 420/429 (97%) Strand = Plus / Plus Query: 26 gcctcgtccgccgttccccgtgaggtgattggcagattgcttcttcctccgccgggatcc 85 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcctcgcccgccattccccgtgaggtgattggcagattgcttcttcctccgccgggatcc 60 Query: 86 ctccgtctccatggccgcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctccgtctccatggccgcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggt 120 Query: 146 cggatccagggccgcgcacacgtctgcaggcagcaagaagatcgtcggcgtgttctacca 205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tggatccagggccgcgcacacgtctgcaggcagcaagaagatcgtcggcgtgttctacca 180 Query: 206 ggccggcgagtacgccgacaagaaccccaacttcgtcggctgcgtcgagggtgccctcgg 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ggccggcgagtacgccgacaagaaccccaacttcgtcggctgcgtcgagggtgccctcgg 240 Query: 266 catacgcgactggctcgagtccaaggggcaccactacattgtcaccgacgacaaggaggg 325 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 241 catacgcgactggctcgagtcgaaggggcaccactacattgtcaccgacgacaaggaggg 300 Query: 326 gttgaacagcgagctggagaagcacattgaagacatgcatgtcctgataaccaccccatt 385 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gtttaacagcgagctggagaagcacattgaagacatgcatgtcctgataaccaccccatt 360 Query: 386 ccacccagcctatgttactgcagagaggatcaagaaggcaaagaacctcgagctgcttct 445 |||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||| Sbjct: 361 ccacccagcctatgttactgcagaaaagatcaagaaggcaaagacccccgagctgcttct 420 Query: 446 cacagctgg 454 ||||||||| Sbjct: 421 cacagctgg 429
>gb|AF479036.1| Triticum aestivum formate dehydrogenase mRNA, partial cds Length = 801 Score = 688 bits (347), Expect = 0.0 Identities = 386/399 (96%) Strand = Plus / Plus Query: 56 ggcagattgcttcttcctccgccgggatccctccgtctccatggccgcgatgtggagggc 115 |||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct: 3 ggcagattgcttctccctccgccgggatctctccgtctccatggctgcgatgtgcagggc 62 Query: 116 cgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcgcacacgtctgcagg 175 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || Sbjct: 63 cgccgcgaggcagctcgtcgaccgggccgtcggatccagggccgcgcacacgtccgcggg 122 Query: 176 cagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaaccccaa 235 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 cagcaagaagatcgtgggcgtgttctaccaggccggcgagtacgccgacaagaaccccaa 182 Query: 236 cttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaaggggca 295 |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 183 cttcgtcggctgtgttgagggggccctcggcatacgcgactggctcgagtccaaggggca 242 Query: 296 ccactacattgtcaccgacgacaaggaggggttgaacagcgagctggagaagcacattga 355 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 tcactacattgtcaccgacgacaaggaggggttgaacagcgagctggagaagcacattga 302 Query: 356 agacatgcatgtcctgataaccaccccattccacccagcctatgttactgcagagaggat 415 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 agacatgcatgttctgataaccaccccattccacccagcctatgttactgcagagaggat 362 Query: 416 caagaaggcaaagaacctcgagctgcttctcacagctgg 454 ||||||||||||||||||||||||||||||||||||||| Sbjct: 363 caagaaggcaaagaacctcgagctgcttctcacagctgg 401
>dbj|AK104788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E04, full insert sequence Length = 1637 Score = 430 bits (217), Expect = e-117 Identities = 319/353 (90%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||| || ||| |||| || ||| ||| ||| |||| |||||||||||| Sbjct: 89 gcgatgtggagggcggcggcggggcatcttctcggccgcgcgctcggctccagggccgcg 148 Query: 162 cacacgtctgcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgcc 221 ||||| || |||||||||||||||||||| || ||||||||| ||| ||||||||||||| Sbjct: 149 cacacatcagcaggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgcc 208 Query: 222 gacaagaaccccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctc 281 |||||||| |||||||||||||||||||| ||||| || |||||||| ||||| ||||| Sbjct: 209 gacaagaatcccaacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggctt 268 Query: 282 gagtccaaggggcaccactacattgtcaccgacgacaaggaggggttgaacagcgagctg 341 |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| Sbjct: 269 gagtccaaggggcatcactacattgtcaccgacgacaaggaggggctaaacagcgagctg 328 Query: 342 gagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcctatgtt 401 |||||||||||||| || ||||||||| |||| |||||||| |||||||||||||||||| Sbjct: 329 gagaagcacattgaggatatgcatgtcttgatcaccacccctttccacccagcctatgtt 388 Query: 402 actgcagagaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 454 | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 agcgcagaaaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 441
>dbj|AK065872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048A01, full insert sequence Length = 1648 Score = 430 bits (217), Expect = e-117 Identities = 319/353 (90%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||| || ||| |||| || ||| ||| ||| |||| |||||||||||| Sbjct: 100 gcgatgtggagggcggcggcggggcatcttctcggccgcgcgctcggctccagggccgcg 159 Query: 162 cacacgtctgcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgcc 221 ||||| || |||||||||||||||||||| || ||||||||| ||| ||||||||||||| Sbjct: 160 cacacatcagcaggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgcc 219 Query: 222 gacaagaaccccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctc 281 |||||||| |||||||||||||||||||| ||||| || |||||||| ||||| ||||| Sbjct: 220 gacaagaatcccaacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggctt 279 Query: 282 gagtccaaggggcaccactacattgtcaccgacgacaaggaggggttgaacagcgagctg 341 |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| Sbjct: 280 gagtccaaggggcatcactacattgtcaccgacgacaaggaggggctaaacagcgagctg 339 Query: 342 gagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcctatgtt 401 |||||||||||||| || ||||||||| |||| |||||||| |||||||||||||||||| Sbjct: 340 gagaagcacattgaggatatgcatgtcttgatcaccacccctttccacccagcctatgtt 399 Query: 402 actgcagagaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 454 | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 agcgcagaaaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 452
>dbj|AB019533.1| Oryza sativa mRNA for Nad-dependent formate dehydrogenase, complete cds Length = 1449 Score = 430 bits (217), Expect = e-117 Identities = 319/353 (90%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||| || ||| |||| || ||| ||| ||| |||| |||||||||||| Sbjct: 103 gcgatgtggagggcggcggcggggcatcttctcggccgcgcgctcggctccagggccgcg 162 Query: 162 cacacgtctgcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgcc 221 ||||| || |||||||||||||||||||| || ||||||||| ||| ||||||||||||| Sbjct: 163 cacacatcagcaggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgcc 222 Query: 222 gacaagaaccccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctc 281 |||||||| |||||||||||||||||||| ||||| || |||||||| ||||| ||||| Sbjct: 223 gacaagaatcccaacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggctt 282 Query: 282 gagtccaaggggcaccactacattgtcaccgacgacaaggaggggttgaacagcgagctg 341 |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| Sbjct: 283 gagtccaaggggcatcactacattgtcaccgacgacaaggaggggctaaacagcgagctg 342 Query: 342 gagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcctatgtt 401 |||||||||||||| || ||||||||| |||| |||||||| |||||||||||||||||| Sbjct: 343 gagaagcacattgaggatatgcatgtcttgatcaccacccctttccacccagcctatgtt 402 Query: 402 actgcagagaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 454 | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 agcgcagaaaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 455
>gb|AY111955.1| Zea mays CL15209_1 mRNA sequence Length = 1667 Score = 402 bits (203), Expect = e-109 Identities = 311/347 (89%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||||| Sbjct: 107 gcgatgtggagggccgccgctaggcagctggtcgaccgggcgctcggctcaagggccgcg 166 Query: 162 cacacgtctgcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgcc 221 ||||||||| |||||||||||||||| ||||| ||||||||| ||||||| ||||| ||| Sbjct: 167 cacacgtctacaggcagcaagaagatagtcggggtgttctacaaggccggggagtatgcc 226 Query: 222 gacaagaaccccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctc 281 |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 227 gacaagaaccccaacttcgtcggctgcgtcgagggtgcactcggcatccgcggctggctc 286 Query: 282 gagtccaaggggcaccactacattgtcaccgacgacaaggaggggttgaacagcgagctg 341 ||||| |||| || || |||||||||||||| |||||||| || ||| | || ||| Sbjct: 287 gagtcgcagggccatcagtacattgtcaccgatgacaaggaaggccccaactgtgaactg 346 Query: 342 gagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcctatgtt 401 |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 347 gagaagcacattgaagacatgcatgtcctgattaccaccccattccacccagcttatgtc 406 Query: 402 actgcagagaggatcaagaaggcaaagaacctcgagctgcttctcac 448 |||||||||||||| |||||||| ||||| || ||||| |||||||| Sbjct: 407 actgcagagaggataaagaaggcgaagaatcttgagcttcttctcac 453
>gb|BT016309.1| Zea mays clone Contig142 mRNA sequence Length = 1507 Score = 394 bits (199), Expect = e-107 Identities = 310/347 (89%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||||| Sbjct: 102 gcgatgtggagggccgccgctaggcagctggtcgaccgggcgctcggctcaagggccgcg 161 Query: 162 cacacgtctgcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgcc 221 ||||||||| |||||||||| ||||| ||||| ||||||||| ||||||| ||||| ||| Sbjct: 162 cacacgtctacaggcagcaaaaagatagtcggggtgttctacaaggccggggagtatgcc 221 Query: 222 gacaagaaccccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctc 281 |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| Sbjct: 222 gacaagaaccccaacttcgtcggctgcgtcgagggtgcactcggcatccgcggctggctc 281 Query: 282 gagtccaaggggcaccactacattgtcaccgacgacaaggaggggttgaacagcgagctg 341 ||||| |||| || || |||||||||||||| |||||||| || ||| | || ||| Sbjct: 282 gagtcgcagggccatcaatacattgtcaccgatgacaaggaaggccccaactgtgaactg 341 Query: 342 gagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcctatgtt 401 |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 342 gagaagcacattgaagacatgcatgtcctgattaccaccccattccacccagcttatgtc 401 Query: 402 actgcagagaggatcaagaaggcaaagaacctcgagctgcttctcac 448 |||||||||||||| |||||||| ||||| || ||||| |||||||| Sbjct: 402 actgcagagaggataaagaaggcgaagaatcttgagcttcttctcac 448
>dbj|AK064610.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B06, full insert sequence Length = 1872 Score = 234 bits (118), Expect = 2e-58 Identities = 238/278 (85%) Strand = Plus / Plus Query: 171 gcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaac 230 ||||||||||||||| |||| || ||||||||| ||| ||| |||| ||||||||||| Sbjct: 627 gcaggcagcaagaaggtcgtgggtgtgttctacaagggtggcaagtatgccgacaagaat 686 Query: 231 cccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaag 290 ||||||||||||||||||||||| || |||||||| |||| |||||| || || ||| Sbjct: 687 cccaacttcgtcggctgcgtcgactccgctctcggcattcgcggctggcttgaatctaag 746 Query: 291 gggcaccactacattgtcaccgacgacaaggaggggttgaacagcgagctggagaagcac 350 ||||| | ||||||||||||||| |||||||||||| | ||| ||||||||||||||||| Sbjct: 747 gggcatcgctacattgtcaccgatgacaaggaggggataaactgcgagctggagaagcac 806 Query: 351 attgaagacatgcatgtcctgataaccaccccattccacccagcctatgttactgcagag 410 || || || || |||||||| ||||||||||||||||||||||| | || |||||| Sbjct: 807 atcgaggatgcccacgtcctgatcaccaccccattccacccagcctacatcaccgcagag 866 Query: 411 aggatcaagaaggcaaagaacctcgagctgcttctcac 448 |||||||||||||| |||||||| ||||| |||||||| Sbjct: 867 aggatcaagaaggccaagaacctggagcttcttctcac 904
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 171 gcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaac 230 |||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||| Sbjct: 16431987 gcaggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaat 16432046 Query: 231 cccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaag 290 |||||||||||||||||||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct: 16432047 cccaacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaag 16432106 Query: 291 gggcaccactacattgtcaccgacgacaaggaggggttgaacagcg 336 ||||| |||||||||||||||||||||||||||||| | ||||||| Sbjct: 16432107 gggcatcactacattgtcaccgacgacaaggaggggctaaacagcg 16432152 Score = 172 bits (87), Expect = 6e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 336 gagctggagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcc 395 |||||||||||||||||||| || ||||||||| |||| |||||||| |||||||||||| Sbjct: 16432791 gagctggagaagcacattgaggatatgcatgtcttgatcaccacccctttccacccagcc 16432850 Query: 396 tatgttactgcagagaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 454 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16432851 tatgttagcgcagaaaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 16432909 Score = 143 bits (72), Expect = 6e-31 Identities = 135/156 (86%) Strand = Plus / Plus Query: 171 gcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaac 230 ||||||||||||||| |||| || ||||||||| ||| |||||||| ||||||||||| Sbjct: 16461801 gcaggcagcaagaaggtcgtgggtgtgttctacaagggtggcgagtatgccgacaagaat 16461860 Query: 231 cccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaag 290 ||||||||||||||||||||||| || |||||||| |||| |||||| || || ||| Sbjct: 16461861 cccaacttcgtcggctgcgtcgactccgctctcggcattcgcggctggcttgaatctaag 16461920 Query: 291 gggcaccactacattgtcaccgacgacaaggagggg 326 ||||| | ||||||||||||||| |||||||||||| Sbjct: 16461921 gggcatcgctacattgtcaccgatgacaaggagggg 16461956 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 336 gagctggagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcc 395 ||||||||||||||||| || || || |||||||| ||||||||||||||||||||| Sbjct: 16462620 gagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccacccagcc 16462679 Query: 396 tatgttactgcagagaggatcaagaaggcaaagaacctcgagctgcttctcac 448 || | || |||||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 16462680 tacatcaccgcagagaggatcaagaaggccaagaacctggagcttcttctcac 16462732 Score = 46.1 bits (23), Expect = 0.099 Identities = 53/63 (84%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||| || ||| |||| || ||| ||| ||| |||| |||||||||||| Sbjct: 16431506 gcgatgtggagggcggcggcggggcatcttctcggccgcgcgctcggctccagggccgcg 16431565 Query: 162 cac 164 ||| Sbjct: 16431566 cac 16431568
>dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0404G03 Length = 135225 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 171 gcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaac 230 |||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||| Sbjct: 41305 gcaggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaat 41364 Query: 231 cccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaag 290 |||||||||||||||||||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct: 41365 cccaacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaag 41424 Query: 291 gggcaccactacattgtcaccgacgacaaggaggggttgaacagcg 336 ||||| |||||||||||||||||||||||||||||| | ||||||| Sbjct: 41425 gggcatcactacattgtcaccgacgacaaggaggggctaaacagcg 41470 Score = 172 bits (87), Expect = 6e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 336 gagctggagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcc 395 |||||||||||||||||||| || ||||||||| |||| |||||||| |||||||||||| Sbjct: 42109 gagctggagaagcacattgaggatatgcatgtcttgatcaccacccctttccacccagcc 42168 Query: 396 tatgttactgcagagaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 454 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42169 tatgttagcgcagaaaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 42227 Score = 143 bits (72), Expect = 6e-31 Identities = 135/156 (86%) Strand = Plus / Plus Query: 171 gcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaac 230 ||||||||||||||| |||| || ||||||||| ||| |||||||| ||||||||||| Sbjct: 71119 gcaggcagcaagaaggtcgtgggtgtgttctacaagggtggcgagtatgccgacaagaat 71178 Query: 231 cccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaag 290 ||||||||||||||||||||||| || |||||||| |||| |||||| || || ||| Sbjct: 71179 cccaacttcgtcggctgcgtcgactccgctctcggcattcgcggctggcttgaatctaag 71238 Query: 291 gggcaccactacattgtcaccgacgacaaggagggg 326 ||||| | ||||||||||||||| |||||||||||| Sbjct: 71239 gggcatcgctacattgtcaccgatgacaaggagggg 71274 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 336 gagctggagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcc 395 ||||||||||||||||| || || || |||||||| ||||||||||||||||||||| Sbjct: 71938 gagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccacccagcc 71997 Query: 396 tatgttactgcagagaggatcaagaaggcaaagaacctcgagctgcttctcac 448 || | || |||||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 71998 tacatcaccgcagagaggatcaagaaggccaagaacctggagcttcttctcac 72050 Score = 46.1 bits (23), Expect = 0.099 Identities = 53/63 (84%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||| || ||| |||| || ||| ||| ||| |||| |||||||||||| Sbjct: 40824 gcgatgtggagggcggcggcggggcatcttctcggccgcgcgctcggctccagggccgcg 40883 Query: 162 cac 164 ||| Sbjct: 40884 cac 40886
>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0008F02 Length = 139655 Score = 218 bits (110), Expect = 1e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 171 gcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaac 230 |||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||| Sbjct: 108550 gcaggcagcaagaagatcgtgggtgtgttctacaagggcggcgagtacgccgacaagaat 108609 Query: 231 cccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaag 290 |||||||||||||||||||| ||||| || |||||||| ||||| ||||| ||||||||| Sbjct: 108610 cccaacttcgtcggctgcgtggagggcgctctcggcatccgcgaatggcttgagtccaag 108669 Query: 291 gggcaccactacattgtcaccgacgacaaggaggggttgaacagcg 336 ||||| |||||||||||||||||||||||||||||| | ||||||| Sbjct: 108670 gggcatcactacattgtcaccgacgacaaggaggggctaaacagcg 108715 Score = 172 bits (87), Expect = 6e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 336 gagctggagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcc 395 |||||||||||||||||||| || ||||||||| |||| |||||||| |||||||||||| Sbjct: 109354 gagctggagaagcacattgaggatatgcatgtcttgatcaccacccctttccacccagcc 109413 Query: 396 tatgttactgcagagaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 454 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109414 tatgttagcgcagaaaggatcaagaaggcaaagaacctcgagctgcttctcacagctgg 109472 Score = 143 bits (72), Expect = 6e-31 Identities = 135/156 (86%) Strand = Plus / Plus Query: 171 gcaggcagcaagaagatcgtcggcgtgttctaccaggccggcgagtacgccgacaagaac 230 ||||||||||||||| |||| || ||||||||| ||| |||||||| ||||||||||| Sbjct: 138364 gcaggcagcaagaaggtcgtgggtgtgttctacaagggtggcgagtatgccgacaagaat 138423 Query: 231 cccaacttcgtcggctgcgtcgagggtgccctcggcatacgcgactggctcgagtccaag 290 ||||||||||||||||||||||| || |||||||| |||| |||||| || || ||| Sbjct: 138424 cccaacttcgtcggctgcgtcgactccgctctcggcattcgcggctggcttgaatctaag 138483 Query: 291 gggcaccactacattgtcaccgacgacaaggagggg 326 ||||| | ||||||||||||||| |||||||||||| Sbjct: 138484 gggcatcgctacattgtcaccgatgacaaggagggg 138519 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 336 gagctggagaagcacattgaagacatgcatgtcctgataaccaccccattccacccagcc 395 ||||||||||||||||| || || || |||||||| ||||||||||||||||||||| Sbjct: 139183 gagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccacccagcc 139242 Query: 396 tatgttactgcagagaggatcaagaaggcaaagaacctcgagctgcttctcac 448 || | || |||||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 139243 tacatcaccgcagagaggatcaagaaggccaagaacctggagcttcttctcac 139295 Score = 46.1 bits (23), Expect = 0.099 Identities = 53/63 (84%) Strand = Plus / Plus Query: 102 gcgatgtggagggccgccgcgaggcagctcgtcgaccgggcggtcggatccagggccgcg 161 |||||||||||||| || ||| |||| || ||| ||| ||| |||| |||||||||||| Sbjct: 108069 gcgatgtggagggcggcggcggggcatcttctcggccgcgcgctcggctccagggccgcg 108128 Query: 162 cac 164 ||| Sbjct: 108129 cac 108131
>emb|AJ577266.2|QRO577266 Quercus robur mRNA for formate dehydrogenase (ORF1) Length = 1513 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Plus Query: 363 catgtcctgataaccaccccattccacccagcctatgttactgcagagaggatcaagaag 422 ||||| || ||||| ||||| ||||| || ||||||||||| || || ||||||| |||| Sbjct: 369 catgttctcataactacccccttccatccggcctatgttacggctgaaaggatcacgaag 428 Query: 423 gcaaagaa 430 || ||||| Sbjct: 429 gccaagaa 436
>ref|XM_466474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1251 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 gcagagaggatcaagaaggcaa 426 |||||||||||||||||||||| Sbjct: 268 gcagagaggatcaagaaggcaa 289
>ref|XM_466475.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1799 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 gcagagaggatcaagaaggcaa 426 |||||||||||||||||||||| Sbjct: 719 gcagagaggatcaagaaggcaa 698
>gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 149929 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 373 taaccaccccattccacccagc 394 |||||||||||||||||||||| Sbjct: 120743 taaccaccccattccacccagc 120722
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 gcagagaggatcaagaaggcaa 426 |||||||||||||||||||||| Sbjct: 22844457 gcagagaggatcaagaaggcaa 22844436
>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0006O15 Length = 139723 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 gcagagaggatcaagaaggcaa 426 |||||||||||||||||||||| Sbjct: 77795 gcagagaggatcaagaaggcaa 77774
>dbj|AK100917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133E20, full insert sequence Length = 5035 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 gcagagaggatcaagaaggcaa 426 |||||||||||||||||||||| Sbjct: 3286 gcagagaggatcaagaaggcaa 3265
>dbj|AK068984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M09, full insert sequence Length = 1798 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 gcagagaggatcaagaaggcaa 426 |||||||||||||||||||||| Sbjct: 719 gcagagaggatcaagaaggcaa 698
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 agatcgtcggcgtgttctaccaggc 208 ||||||||||||||||| ||||||| Sbjct: 5442453 agatcgtcggcgtgttcaaccaggc 5442429
>gb|AC158353.3| Mus musculus chromosome 8, clone RP24-363C18, complete sequence Length = 161841 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 tggagaagcacattgaagaca 360 ||||||||||||||||||||| Sbjct: 17043 tggagaagcacattgaagaca 17063
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 cgccgcgaggcagctcgtcgaccgg 140 |||||||| |||||||||||||||| Sbjct: 3787866 cgccgcgatgcagctcgtcgaccgg 3787842
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ccaggccggcgagtacgccga 223 ||||||||||||||||||||| Sbjct: 37859 ccaggccggcgagtacgccga 37879
>gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, complete sequence Length = 234778 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 tggagaagcacattgaagaca 360 ||||||||||||||||||||| Sbjct: 28294 tggagaagcacattgaagaca 28274
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cgtgttctaccaggccggcg 213 |||||||||||||||||||| Sbjct: 5775 cgtgttctaccaggccggcg 5794
>gb|AC120135.7| Mus musculus chromosome 7, clone RP23-64O4, complete sequence Length = 220872 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gtctgcaggcagcaagaaga 186 |||||||||||||||||||| Sbjct: 58088 gtctgcaggcagcaagaaga 58069
>gb|AC147502.2| Mus musculus BAC clone RP23-111N9 from chromosome 7, complete sequence Length = 202934 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tgtcctgataaccaccccat 384 |||||||||||||||||||| Sbjct: 103422 tgtcctgataaccaccccat 103403
>gb|AC164982.2| Mus musculus BAC clone RP23-57A9 from chromosome 9, complete sequence Length = 247463 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cctccgccgggatccctccg 90 |||||||||||||||||||| Sbjct: 41150 cctccgccgggatccctccg 41131
>ref|XM_001004343.1| PREDICTED: Mus musculus pleckstrin homology domain interacting protein (Phip), mRNA Length = 10936 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cctccgccgggatccctccg 90 |||||||||||||||||||| Sbjct: 520 cctccgccgggatccctccg 501
>gb|AC121787.3| Mus musculus BAC clone RP23-393K24 from chromosome 9, complete sequence Length = 200985 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cctccgccgggatccctccg 90 |||||||||||||||||||| Sbjct: 79062 cctccgccgggatccctccg 79043
>gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, complete sequence Length = 227330 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gtctgcaggcagcaagaaga 186 |||||||||||||||||||| Sbjct: 225943 gtctgcaggcagcaagaaga 225924
>gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 of the complete genome Length = 324746 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ctgcagagaggatcaagaag 422 |||||||||||||||||||| Sbjct: 271910 ctgcagagaggatcaagaag 271929
>gb|AC166078.2| Mus musculus BAC clone RP23-13G1 from chromosome 9, complete sequence Length = 225128 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cctccgccgggatccctccg 90 |||||||||||||||||||| Sbjct: 34987 cctccgccgggatccctccg 35006
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 cggctgcgtcgagggtgccctcgg 265 |||| ||||||||||||||||||| Sbjct: 89505 cggcggcgtcgagggtgccctcgg 89528
>gb|AE009847.1|AE009847 Pyrobaculum aerophilum strain IM2 section 102 of 201 of the complete genome Length = 10528 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 tcgtcggcgtgttctaccag 206 |||||||||||||||||||| Sbjct: 7224 tcgtcggcgtgttctaccag 7205
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ctgcagagaggatcaagaag 422 |||||||||||||||||||| Sbjct: 894018 ctgcagagaggatcaagaag 893999
>dbj|AK032797.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720454M04 product:neuronal differentiation related protein, full insert sequence Length = 2495 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cctccgccgggatccctccg 90 |||||||||||||||||||| Sbjct: 32 cctccgccgggatccctccg 13
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 gcagctcgtcgaccgggcggtcgg 148 ||||||||||||||| |||||||| Sbjct: 152427 gcagctcgtcgaccgcgcggtcgg 152450
>gb|AC008339.2|AC008339 Drosophila melanogaster, chromosome 2R, region 42A-42A, BAC clone BACR13P06, complete sequence Length = 180699 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gaacagcgagctggagaagc 348 |||||||||||||||||||| Sbjct: 109559 gaacagcgagctggagaagc 109540
>gb|AC009255.4|AC009255 Drosophila melanogaster, chromosome 2R, region 42A-42A, BAC clone BACR39E09, complete sequence Length = 163990 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gaacagcgagctggagaagc 348 |||||||||||||||||||| Sbjct: 153384 gaacagcgagctggagaagc 153365
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cgacgacaaggaggggttga 330 |||||||||||||||||||| Sbjct: 17906586 cgacgacaaggaggggttga 17906605
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 233 caacttcgtcggctgcgtcgaggg 256 |||||||||||||| ||||||||| Sbjct: 2152799 caacttcgtcggcttcgtcgaggg 2152776
>gb|AC069211.15| Homo sapiens 3 BAC RP11-509E17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107467 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tctgcaggcagcaagaagat 187 |||||||||||||||||||| Sbjct: 80768 tctgcaggcagcaagaagat 80787
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ctgcagagaggatcaagaag 422 |||||||||||||||||||| Sbjct: 1177396 ctgcagagaggatcaagaag 1177415
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ctgcagagaggatcaagaag 422 |||||||||||||||||||| Sbjct: 1173802 ctgcagagaggatcaagaag 1173821
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 gctcgtcgaccgggcggtcg 147 |||||||||||||||||||| Sbjct: 2264292 gctcgtcgaccgggcggtcg 2264273
>gb|AE005078.1| Halobacterium sp. NRC-1 section 109 of 170 of the complete genome Length = 11449 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ggccggcgagtacgccgaca 225 |||||||||||||||||||| Sbjct: 5610 ggccggcgagtacgccgaca 5629
>gb|AC007121.1|AC007121 Drosophila melanogaster, chromosome 2R, region 42A8-42A16, P1 clones DS06954 and DS05325, complete sequence Length = 135182 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 gaacagcgagctggagaagc 348 |||||||||||||||||||| Sbjct: 35383 gaacagcgagctggagaagc 35402
>gb|AE003784.5| Drosophila melanogaster chromosome 2R, section 5 of 73 of the complete sequence Length = 305162 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gaacagcgagctggagaagc 348 |||||||||||||||||||| Sbjct: 172046 gaacagcgagctggagaagc 172027
>emb|AL731587.2|OSJN00230 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016N04, complete sequence Length = 164645 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 cgacgacaaggaggggttga 330 |||||||||||||||||||| Sbjct: 103341 cgacgacaaggaggggttga 103360
>gb|AC149060.4| Mus musculus BAC clone RP23-242D8 from 7, complete sequence Length = 205543 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tgtcctgataaccaccccat 384 |||||||||||||||||||| Sbjct: 163877 tgtcctgataaccaccccat 163858
>emb|AL669966.10| Mouse DNA sequence from clone RP23-174K9 on chromosome 4, complete sequence Length = 199890 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 407 agagaggatcaagaaggcaaagaa 430 |||||||||||||||| ||||||| Sbjct: 44264 agagaggatcaagaagacaaagaa 44241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,136,937 Number of Sequences: 3902068 Number of extensions: 3136937 Number of successful extensions: 58326 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57878 Number of HSP's gapped (non-prelim): 440 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
