ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 133 2e-31
2SEPN1_HUMAN (Q9NZV5) Selenoprotein N precursor 29 8.3
3MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A 29 8.3

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score =  133 bits (335), Expect = 2e-31
 Identities = 77/135 (57%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
 Frame = +2

Query: 107 MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 286
           MTSVWKTKVL GL+             EFLKSFN            TELEPKVVE +E+S
Sbjct: 1   MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 287 PPEXXXXXXXXXXXXXXX-NSAAVIKFLDEMAKIGFPGAKLVSDAVVKSGTTPLSPAIVF 463
           PPE                N  AV KFL+E+AKI FPGAK VSDAV KSGTTPLSPAI F
Sbjct: 61  PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAF 120

Query: 464 ILDKVAPFVPAPKEE 508
           IL+KVAPFV  PKEE
Sbjct: 121 ILEKVAPFV--PKEE 133



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>SEPN1_HUMAN (Q9NZV5) Selenoprotein N precursor|
          Length = 590

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 377 AKIGFPGAKLVSDAVVKSGTTPLSPAIVFILDKVAPFVPAPKEE 508
           +K GF G   ++ + +++ T   SP+ VF      PF+P P +E
Sbjct: 173 SKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQE 216



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>MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A|
          Length = 329

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 94  EGEEYDERMEDQGSPRAQQVLRQGWQEGRRRR 189
           EG E   R    G    QQ+L+QGWQ+ +R R
Sbjct: 198 EGGELFRRHHVSGEVIRQQLLQQGWQQQQRAR 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,047,403
Number of Sequences: 219361
Number of extensions: 857575
Number of successful extensions: 2605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2604
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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