ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin... 34 0.32
2MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p... 34 0.32
3THIE_YERPE (Q8ZAQ1) Thiamine-phosphate pyrophosphorylase (EC 2.5... 34 0.32
4POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p... 33 0.54
5WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting ... 33 0.54
6IF2_LACAC (Q5FJN6) Translation initiation factor IF-2 32 0.92
7EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 32 1.2
8KLF5_MOUSE (Q9Z0Z7) Krueppel-like factor 5 (Intestinal-enriched ... 31 2.1
9SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1... 31 2.1
10SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1 31 2.1
11KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched ... 31 2.1
12WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interactin... 31 2.7
13POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p... 31 2.7
14SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1 30 3.5
15GPR64_MOUSE (Q8CJ12) G-protein coupled receptor 64 precursor (Ep... 30 3.5
16S45A1_HUMAN (Q9Y2W3) Proton-associated sugar transporter A (PAST... 30 3.5
17Y004_MYCPA (Q9L7L4) UPF0232 protein MAP_0004 30 3.5
18PKSL1_ASPPA (Q12053) Aflatoxin biosynthesis polyketide synthase ... 30 4.6
19WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protei... 30 4.6
20POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p... 30 4.6
21POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p... 30 6.0
22CX56_CHICK (P29415) Gap junction Cx56 protein (Connexin-56) 30 6.0
23VGF_HUMAN (O15240) Neurosecretory protein VGF precursor 30 6.0
24RNB_HHV2H (P89479) Probable RNA-binding protein 30 6.0
25SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-rel... 29 7.8
26MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myos... 29 7.8
27ARAA_BACST (Q9S467) L-arabinose isomerase (EC 5.3.1.4) 29 7.8
28LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase... 29 7.8
29IF2_PSEPF (Q3KI84) Translation initiation factor IF-2 29 7.8
30TRUD_METCA (Q604M0) tRNA pseudouridine synthase D (EC 5.4.99.-) ... 29 7.8
31SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1... 29 7.8
32POLG_HCVED (O39929) Genome polyprotein [Contains: Core protein p... 29 7.8
33KPC1_NEUCR (P87253) Protein kinase C-like (EC 2.7.11.13) 29 7.8
34POLG_HCVIN (Q913D4) Genome polyprotein [Contains: Core protein p... 29 7.8
35POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p... 29 7.8
36PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-... 24 8.8

>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
 Frame = +2

Query: 41  PPPPTNLSASPLPRFLLPQFSRSEE--RIAPPGLARIRQTPSLPRQSRRNRLPSSAAER- 211
           PPPP+     PLP    P  S ++E  R+    L+    TP LP   R   LP   +ER 
Sbjct: 310 PPPPSRPGPPPLP----PSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERP 365

Query: 212 ---------FSGLLRPPFPTFLVVGLFLVVAESGSTA 295
                     SG L PP P          V+ +GST+
Sbjct: 366 PPPVRDPPGRSGPLPPPPP----------VSRNGSTS 392



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>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = +2

Query: 8   PPHLCCAVLSHPPPPTNLSASPLPRFLLPQFSRSEERIAPPGL----ARIRQTPSLPRQS 175
           PP LC      PPPP  +S  PLP    P     +E   PP +    +R R  P L    
Sbjct: 425 PPPLC------PPPPPPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQ 478

Query: 176 RRNRLPSSAAERFSGLLRPPFPT 244
           R  R  + A    +    PP PT
Sbjct: 479 RAEREAARAGPEGTS---PPTPT 498



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>THIE_YERPE (Q8ZAQ1) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP|
           pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate
           synthase)
          Length = 215

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
 Frame = -1

Query: 369 HHLLMARTYMP---------PAQTKNQPSNPSRQAVLPLSATTKNKPTTRKVGNGGLS 223
           H L +A+T  P         P QTK  PS+P  Q +  LS   KN P    V  GG+S
Sbjct: 113 HELAVAKTLRPSYIALGHIFPTQTKQMPSSP--QGLASLSRQVKNTPDYPTVAIGGIS 168



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>POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3018

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = -3

Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           R  R    R   RGRR QPIP A P QGR+   PG
Sbjct: 46  RATRKTSERSQPRGRR-QPIPKARPSQGRTWGQPG 79



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>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 487

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 22/65 (33%), Positives = 26/65 (40%)
 Frame = +2

Query: 41  PPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAERFSG 220
           PPPP+     PLP    P  S    R+    L+    TP LP   R   LP    ER   
Sbjct: 296 PPPPSRPGPPPLP----PTSSDEIPRLPQRNLSLTSPTPPLPSPGRSGPLPPPPTERPPP 351

Query: 221 LLRPP 235
            +R P
Sbjct: 352 PVRDP 356



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>IF2_LACAC (Q5FJN6) Translation initiation factor IF-2|
          Length = 877

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
 Frame = -3

Query: 310 QP*QAGCTTALGNNQEQTDDEEGRKRRS-------QQPRESLRGRRRQPIPPALP-GQGR 155
           +P + G    +  + E++D  E ++R++       Q+PR+ +  R+ +P+P  L   +G 
Sbjct: 240 KPGRKGKNQFVNGHSERSDRSERKRRKNKKHQQEQQKPRKQITKRKERPLPDILVYEEGM 299

Query: 154 SLPDPGKTRRRDP 116
           +  D GK   R+P
Sbjct: 300 NAQDIGKLIHREP 312



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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 38  HPPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPS 196
           HPPPPT     P P +      +     +PP    ++ TPS P +  + + P+
Sbjct: 177 HPPPPTYAQPPPTPIYSPSPQVQPPPTYSPPPPTHVQPTPSPPSRGHQPQPPT 229



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>KLF5_MOUSE (Q9Z0Z7) Krueppel-like factor 5 (Intestinal-enriched krueppel-like|
           factor) (Transcription factor BTEB2) (Basic
           transcription element-binding protein 2) (BTE-binding
           protein 2)
          Length = 446

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 390 CSFALGAHHLLMARTYMPPAQTKNQPSNPSRQA 292
           C++ + +  L    TY PP+   ++P +P RQA
Sbjct: 273 CTYTMPSQFLPQQATYFPPSPPSSEPGSPDRQA 305



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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 280 LGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116
           +G   +    +  R+RRS  P  + R R   P PP  P      P P   RRR P
Sbjct: 544 MGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPP------PPPPPRRRRSP 592



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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -3

Query: 232 RSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDPLL 110
           R +Q   S R RRR P PP    +    P P   RRR P L
Sbjct: 529 RKRQKEPSPRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSL 569



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -3

Query: 268 QEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116
           + Q +    R+RRS  P  +   RRR P PP  P + RS   P   RRR P
Sbjct: 530 KRQKEPSPRRRRRSPSPPPA--RRRRSPSPPPPPRRRRS---PSLPRRRSP 575



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>KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched krueppel-like|
           factor) (Colon krueppel-like factor) (Transcription
           factor BTEB2) (Basic transcription element-binding
           protein 2) (BTE-binding protein 2) (GC box-binding
           protein 2)
          Length = 457

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 390 CSFALGAHHLLMARTYMPPAQTKNQPSNPSRQA 292
           C++ + +  L    TY PP+   ++P +P RQA
Sbjct: 284 CTYTMPSQFLPQQATYFPPSPPSSEPGSPDRQA 316



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>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 493

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
 Frame = +2

Query: 41  PPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAER--- 211
           PPPP+     PLP    P  +    R+    L+     P LP   R   LP   +ER   
Sbjct: 302 PPPPSRPGPPPLP----PASNDEIPRLPQRNLSLTSSAPPLPSPGRSGPLPPPPSERPPP 357

Query: 212 -------FSGLLRPPFP 241
                   SG L PP P
Sbjct: 358 PVRDPPGRSGPLPPPPP 374



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>POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3022

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -3

Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           R+ R    R   RGRR QP P A P +GRS   PG
Sbjct: 46  REVRKTSERSQPRGRR-QPTPKARPREGRSWAQPG 79



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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 280 LGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116
           +G   +    + GR+RRS  P  +   RRR+   PA P + R  P P   RRR P
Sbjct: 546 MGKRWQSPVTKSGRRRRSPSPPPT---RRRRSPSPAPPPRRRRTPTP-PPRRRTP 596



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>GPR64_MOUSE (Q8CJ12) G-protein coupled receptor 64 precursor|
           (Epididymis-specific protein 6) (Me6 receptor)
          Length = 1009

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 11  PHLCCAVLSHPPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRL 190
           P +C A   H PP ++ S   +P+  +     S+  +A P L     TPS P  ++ + L
Sbjct: 234 PIVCLADQPHGPPLSSSSKPVVPQATIISHVASDFSLAEP-LDHALMTPSTPSLTQESNL 292

Query: 191 PS 196
           PS
Sbjct: 293 PS 294



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>S45A1_HUMAN (Q9Y2W3) Proton-associated sugar transporter A (PAST-A) (Solute|
           carrier family 45 member 1) (Deleted in neuroblastoma 5
           protein) (DNb-5)
          Length = 782

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 SEERIA--PPGLARIRQTPSLPRQSRRNRLPSSAAERFSGLLRPPFPTFLVVGLFL 268
           SE+R A   P L      P LP +   + LPS  A  FS  + PP P     G F+
Sbjct: 331 SEKRAAMKSPSLPLPPSPPVLPEEGPGDSLPSHTATNFSSPISPPSPLTPKYGSFI 386



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>Y004_MYCPA (Q9L7L4) UPF0232 protein MAP_0004|
          Length = 181

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -3

Query: 250 EEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116
           EE R     Q +++ RGR   P P  + GQ RS   PG    RDP
Sbjct: 24  EEARAAARAQGKDAGRGRAAAPTPRRVAGQRRSWSGPGPD-ARDP 67



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>PKSL1_ASPPA (Q12053) Aflatoxin biosynthesis polyketide synthase (PKS)|
          Length = 2109

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 396  QECSFALGAHHLLMARTYMPPAQTKNQPS--NPSRQAVLPLSATT 268
            Q+C  A   H +  A   +PP  T ++PS  +PS++A   +  TT
Sbjct: 1266 QDCKCAAPGHEIKTADYQVPPESTPHRPSKLDPSKEAFPEIKTTT 1310



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>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +2

Query: 50  PTNLSASPLPRFLL----PQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAERFS 217
           P++ +A+P P        PQ      R + P L R+ Q PSLP  SR N   S+  +  S
Sbjct: 116 PSSRAAAPRPPVSAASGRPQDDTDSSRASLPELPRM-QRPSLPDLSRPNTTSSTGMKHSS 174

Query: 218 GLLRPPFP 241
               PP P
Sbjct: 175 SAPPPPPP 182



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>POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3020

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -3

Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           R  R    R   RGRR QPIP A   +GRS   PG
Sbjct: 46  RATRKTSERSQPRGRR-QPIPKARRSEGRSWAQPG 79



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>POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3015

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -3

Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           R  R    R   RGRR QPIP A   QGR    PG
Sbjct: 46  RATRKTSERSQPRGRR-QPIPKARQSQGRHWAQPG 79



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>CX56_CHICK (P29415) Gap junction Cx56 protein (Connexin-56)|
          Length = 510

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +2

Query: 41  PPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAERFSG 220
           PP P  +  +  P  +LP     + R   P LA +   P     + R R PS+ A   S 
Sbjct: 284 PPAPPVVVTTTAPAPVLP-----DTRAVTPLLAPVTMAPYYAAAAPRTRPPSNTASMASY 338

Query: 221 LLRPPFP 241
            + PP P
Sbjct: 339 PVAPPVP 345



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>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor|
          Length = 616

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +2

Query: 41  PPPPTNLSASPLPRF--LLPQFSRSEERIAPPG---------LARIRQTPS-LPRQSRRN 184
           PPPP   +   LP +  +LP + R E+ + PPG           R  Q PS L R+   +
Sbjct: 509 PPPPPPSARDELPDWNEVLPPWDREEDEVYPPGPYHPFPNYIRPRTLQPPSALRRRHYHH 568

Query: 185 RLPSS 199
            LP S
Sbjct: 569 ALPPS 573



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>RNB_HHV2H (P89479) Probable RNA-binding protein|
          Length = 151

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 23  CAVLSHPPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSA 202
           CA LS P P   +  S +PR             AP    R+ + P +PR+ R  R+P S 
Sbjct: 72  CAALSIPKPSEAVRPSRIPR-------------AP----RVPREPRVPREPREPRVPRSP 114

Query: 203 AE-RFSGLLRPPFP 241
            E R   + R P P
Sbjct: 115 REPRVPRIPRDPRP 128



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>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)|
          Length = 1032

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 41  PPPPTNLS---ASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQS 175
           PPPPT L+   ASPLP   LP + R +    PP      Q P LP Q+
Sbjct: 172 PPPPTTLNGPGASPLP---LPMY-RPDGLSGPPPPNAQYQPPPLPGQT 215



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>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)|
          Length = 2158

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -3

Query: 277  GNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116
            G+++E  D E      S     + RG    P  PALP  G   P P  T    P
Sbjct: 1992 GSDEENLDSETSASTESLLEERAGRGASEGPPAPALPCPGAPTPSPLPTVAAPP 2045



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>ARAA_BACST (Q9S467) L-arabinose isomerase (EC 5.3.1.4)|
          Length = 496

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 28/76 (36%), Positives = 35/76 (46%)
 Frame = -1

Query: 378 LGAHHLLMARTYMPPAQTKNQPSNPSRQAVLPLSATTKNKPTTRKVGNGGLSSPENLSAA 199
           LGAH L +  T    A T+       R  V PLS   K  P  R V +GG  +  N S  
Sbjct: 345 LGAHMLEVCPTI---AATR------PRIEVHPLSIGGKEDPA-RLVFDGGEGAAVNASLI 394

Query: 198 DDGNRFRLLCRGKEGV 151
           D G+RFRL+    + V
Sbjct: 395 DLGHRFRLIVNEVDAV 410



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>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein-binding protein 1)
           (PTPRF-interacting protein-binding protein 1) (hSGT2)
          Length = 1011

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 289 TTALGNNQEQTDDEEGRK-RRSQQPRESLRGRRRQPIPPALPGQGRSLPD-PGKTRR 125
           +++LGN +++T D E    +++ + R     R    +PP  PGQ  S+ D P  TR+
Sbjct: 464 SSSLGNLKKETSDGEKETIQKTSEDRAPAESRPFGTLPPRPPGQDTSMDDNPFGTRK 520



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>IF2_PSEPF (Q3KI84) Translation initiation factor IF-2|
          Length = 837

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 283 ALGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDP--GKTRRRDPLL 110
           A+ N   Q  +EE R R  ++ R       RQP  P+ P +  + P P     R   P++
Sbjct: 113 AVENAARQKAEEEARVRAEEEAR-------RQPAAPSAPAEAVAAPAPVAEPVREAAPVV 165

Query: 109 AAA 101
           AAA
Sbjct: 166 AAA 168



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>TRUD_METCA (Q604M0) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 354

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 192 GNRFRLLCRGKEGVC 148
           GNRFR++ RG EGVC
Sbjct: 134 GNRFRIILRGLEGVC 148



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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -3

Query: 268 QEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116
           +++     GR+RRS  P  +   RRR+   PA P + R  P P   RRR P
Sbjct: 536 RQKETSPRGRRRRSPSPPPT---RRRRSPSPAPPPRRRRTPTP-PPRRRTP 582



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>POLG_HCVED (O39929) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3007

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -3

Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           R  R    R   RGRR QPIP A   +GRS   PG
Sbjct: 46  RATRKTSERSQPRGRR-QPIPKARRPEGRSWAQPG 79



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>KPC1_NEUCR (P87253) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1142

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 295 GCTTALGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           G +   G++++  DD EG    S  P+E +RG        + P    S P PG
Sbjct: 76  GASPMSGSHRQSVDDFEGYGAPSPPPKEDVRGHSSHQSQGSGPLMPASAPYPG 128



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>POLG_HCVIN (Q913D4) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3010

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -3

Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           R  R    R   RGRR QPIP A   +GRS   PG
Sbjct: 46  RATRKTSERSQPRGRR-QPIPKARRPEGRSWAQPG 79



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>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3010

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -3

Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137
           R  R    R   RGRR QPIP A   +GRS   PG
Sbjct: 46  RATRKTSERSQPRGRR-QPIPKARRPEGRSWAQPG 79



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>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing|
           protein 2) (Retinoblastoma protein-interacting
           zinc-finger protein) (Zinc finger protein RIZ)
           (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein
           G3B)
          Length = 1718

 Score = 23.9 bits (50), Expect(2) = 8.8
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = -1

Query: 351 RTYMPPA------QTKNQPSNPSRQAVLPLSATTKNKPTTRKVGNGGLSS 220
           RT  PPA      +T + P  PS    LPLS +T    +  K  +  LSS
Sbjct: 640 RTASPPALPKIKAETDSDPMVPSCSLSLPLSISTTEAVSFHKEKSVYLSS 689



 Score = 23.5 bits (49), Expect(2) = 8.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 229 SQQPRESLRGRRRQPIPPALPGQGRSLPDPGK 134
           S  P  S R +RR   PP+ P    +L D GK
Sbjct: 724 SMLPVTSSRFKRRTSSPPSSPQHSPALRDFGK 755


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,870,544
Number of Sequences: 219361
Number of extensions: 1344476
Number of successful extensions: 6965
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 5967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6906
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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