ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart56h06 |
|---|---|
| Clone Library Name | barley_pub |
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 33.9 bits (76), Expect = 0.32 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 12/97 (12%) Frame = +2 Query: 41 PPPPTNLSASPLPRFLLPQFSRSEE--RIAPPGLARIRQTPSLPRQSRRNRLPSSAAER- 211 PPPP+ PLP P S ++E R+ L+ TP LP R LP +ER Sbjct: 310 PPPPSRPGPPPLP----PSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERP 365 Query: 212 ---------FSGLLRPPFPTFLVVGLFLVVAESGSTA 295 SG L PP P V+ +GST+ Sbjct: 366 PPPVRDPPGRSGPLPPPPP----------VSRNGSTS 392
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 33.9 bits (76), Expect = 0.32 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Frame = +2 Query: 8 PPHLCCAVLSHPPPPTNLSASPLPRFLLPQFSRSEERIAPPGL----ARIRQTPSLPRQS 175 PP LC PPPP +S PLP P +E PP + +R R P L Sbjct: 425 PPPLC------PPPPPPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQ 478 Query: 176 RRNRLPSSAAERFSGLLRPPFPT 244 R R + A + PP PT Sbjct: 479 RAEREAARAGPEGTS---PPTPT 498
>THIE_YERPE (Q8ZAQ1) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 215 Score = 33.9 bits (76), Expect = 0.32 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 9/58 (15%) Frame = -1 Query: 369 HHLLMARTYMP---------PAQTKNQPSNPSRQAVLPLSATTKNKPTTRKVGNGGLS 223 H L +A+T P P QTK PS+P Q + LS KN P V GG+S Sbjct: 113 HELAVAKTLRPSYIALGHIFPTQTKQMPSSP--QGLASLSRQVKNTPDYPTVAIGGIS 168
>POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3018 Score = 33.1 bits (74), Expect = 0.54 Identities = 18/35 (51%), Positives = 19/35 (54%) Frame = -3 Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 R R R RGRR QPIP A P QGR+ PG Sbjct: 46 RATRKTSERSQPRGRR-QPIPKARPSQGRTWGQPG 79
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 33.1 bits (74), Expect = 0.54 Identities = 22/65 (33%), Positives = 26/65 (40%) Frame = +2 Query: 41 PPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAERFSG 220 PPPP+ PLP P S R+ L+ TP LP R LP ER Sbjct: 296 PPPPSRPGPPPLP----PTSSDEIPRLPQRNLSLTSPTPPLPSPGRSGPLPPPPTERPPP 351 Query: 221 LLRPP 235 +R P Sbjct: 352 PVRDP 356
>IF2_LACAC (Q5FJN6) Translation initiation factor IF-2| Length = 877 Score = 32.3 bits (72), Expect = 0.92 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Frame = -3 Query: 310 QP*QAGCTTALGNNQEQTDDEEGRKRRS-------QQPRESLRGRRRQPIPPALP-GQGR 155 +P + G + + E++D E ++R++ Q+PR+ + R+ +P+P L +G Sbjct: 240 KPGRKGKNQFVNGHSERSDRSERKRRKNKKHQQEQQKPRKQITKRKERPLPDILVYEEGM 299 Query: 154 SLPDPGKTRRRDP 116 + D GK R+P Sbjct: 300 NAQDIGKLIHREP 312
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 32.0 bits (71), Expect = 1.2 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = +2 Query: 38 HPPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPS 196 HPPPPT P P + + +PP ++ TPS P + + + P+ Sbjct: 177 HPPPPTYAQPPPTPIYSPSPQVQPPPTYSPPPPTHVQPTPSPPSRGHQPQPPT 229
>KLF5_MOUSE (Q9Z0Z7) Krueppel-like factor 5 (Intestinal-enriched krueppel-like| factor) (Transcription factor BTEB2) (Basic transcription element-binding protein 2) (BTE-binding protein 2) Length = 446 Score = 31.2 bits (69), Expect = 2.1 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -1 Query: 390 CSFALGAHHLLMARTYMPPAQTKNQPSNPSRQA 292 C++ + + L TY PP+ ++P +P RQA Sbjct: 273 CTYTMPSQFLPQQATYFPPSPPSSEPGSPDRQA 305
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/55 (32%), Positives = 23/55 (41%) Frame = -3 Query: 280 LGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116 +G + + R+RRS P + R R P PP P P P RRR P Sbjct: 544 MGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPP------PPPPPRRRRSP 592
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = -3 Query: 232 RSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDPLL 110 R +Q S R RRR P PP + P P RRR P L Sbjct: 529 RKRQKEPSPRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSL 569 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = -3 Query: 268 QEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116 + Q + R+RRS P + RRR P PP P + RS P RRR P Sbjct: 530 KRQKEPSPRRRRRSPSPPPA--RRRRSPSPPPPPRRRRS---PSLPRRRSP 575
>KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched krueppel-like| factor) (Colon krueppel-like factor) (Transcription factor BTEB2) (Basic transcription element-binding protein 2) (BTE-binding protein 2) (GC box-binding protein 2) Length = 457 Score = 31.2 bits (69), Expect = 2.1 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -1 Query: 390 CSFALGAHHLLMARTYMPPAQTKNQPSNPSRQA 292 C++ + + L TY PP+ ++P +P RQA Sbjct: 284 CTYTMPSQFLPQQATYFPPSPPSSEPGSPDRQA 316
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 30.8 bits (68), Expect = 2.7 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 10/77 (12%) Frame = +2 Query: 41 PPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAER--- 211 PPPP+ PLP P + R+ L+ P LP R LP +ER Sbjct: 302 PPPPSRPGPPPLP----PASNDEIPRLPQRNLSLTSSAPPLPSPGRSGPLPPPPSERPPP 357 Query: 212 -------FSGLLRPPFP 241 SG L PP P Sbjct: 358 PVRDPPGRSGPLPPPPP 374
>POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3022 Score = 30.8 bits (68), Expect = 2.7 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = -3 Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 R+ R R RGRR QP P A P +GRS PG Sbjct: 46 REVRKTSERSQPRGRR-QPTPKARPREGRSWAQPG 79
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = -3 Query: 280 LGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116 +G + + GR+RRS P + RRR+ PA P + R P P RRR P Sbjct: 546 MGKRWQSPVTKSGRRRRSPSPPPT---RRRRSPSPAPPPRRRRTPTP-PPRRRTP 596
>GPR64_MOUSE (Q8CJ12) G-protein coupled receptor 64 precursor| (Epididymis-specific protein 6) (Me6 receptor) Length = 1009 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +2 Query: 11 PHLCCAVLSHPPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRL 190 P +C A H PP ++ S +P+ + S+ +A P L TPS P ++ + L Sbjct: 234 PIVCLADQPHGPPLSSSSKPVVPQATIISHVASDFSLAEP-LDHALMTPSTPSLTQESNL 292 Query: 191 PS 196 PS Sbjct: 293 PS 294
>S45A1_HUMAN (Q9Y2W3) Proton-associated sugar transporter A (PAST-A) (Solute| carrier family 45 member 1) (Deleted in neuroblastoma 5 protein) (DNb-5) Length = 782 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = +2 Query: 107 SEERIA--PPGLARIRQTPSLPRQSRRNRLPSSAAERFSGLLRPPFPTFLVVGLFL 268 SE+R A P L P LP + + LPS A FS + PP P G F+ Sbjct: 331 SEKRAAMKSPSLPLPPSPPVLPEEGPGDSLPSHTATNFSSPISPPSPLTPKYGSFI 386
>Y004_MYCPA (Q9L7L4) UPF0232 protein MAP_0004| Length = 181 Score = 30.4 bits (67), Expect = 3.5 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = -3 Query: 250 EEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116 EE R Q +++ RGR P P + GQ RS PG RDP Sbjct: 24 EEARAAARAQGKDAGRGRAAAPTPRRVAGQRRSWSGPGPD-ARDP 67
>PKSL1_ASPPA (Q12053) Aflatoxin biosynthesis polyketide synthase (PKS)| Length = 2109 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -1 Query: 396 QECSFALGAHHLLMARTYMPPAQTKNQPS--NPSRQAVLPLSATT 268 Q+C A H + A +PP T ++PS +PS++A + TT Sbjct: 1266 QDCKCAAPGHEIKTADYQVPPESTPHRPSKLDPSKEAFPEIKTTT 1310
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 30.0 bits (66), Expect = 4.6 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +2 Query: 50 PTNLSASPLPRFLL----PQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAERFS 217 P++ +A+P P PQ R + P L R+ Q PSLP SR N S+ + S Sbjct: 116 PSSRAAAPRPPVSAASGRPQDDTDSSRASLPELPRM-QRPSLPDLSRPNTTSSTGMKHSS 174 Query: 218 GLLRPPFP 241 PP P Sbjct: 175 SAPPPPPP 182
>POLG_HCVNZ (Q81258) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3020 Score = 30.0 bits (66), Expect = 4.6 Identities = 17/35 (48%), Positives = 18/35 (51%) Frame = -3 Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 R R R RGRR QPIP A +GRS PG Sbjct: 46 RATRKTSERSQPRGRR-QPIPKARRSEGRSWAQPG 79
>POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3015 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/35 (48%), Positives = 17/35 (48%) Frame = -3 Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 R R R RGRR QPIP A QGR PG Sbjct: 46 RATRKTSERSQPRGRR-QPIPKARQSQGRHWAQPG 79
>CX56_CHICK (P29415) Gap junction Cx56 protein (Connexin-56)| Length = 510 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/67 (29%), Positives = 28/67 (41%) Frame = +2 Query: 41 PPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSAAERFSG 220 PP P + + P +LP + R P LA + P + R R PS+ A S Sbjct: 284 PPAPPVVVTTTAPAPVLP-----DTRAVTPLLAPVTMAPYYAAAAPRTRPPSNTASMASY 338 Query: 221 LLRPPFP 241 + PP P Sbjct: 339 PVAPPVP 345
>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor| Length = 616 Score = 29.6 bits (65), Expect = 6.0 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%) Frame = +2 Query: 41 PPPPTNLSASPLPRF--LLPQFSRSEERIAPPG---------LARIRQTPS-LPRQSRRN 184 PPPP + LP + +LP + R E+ + PPG R Q PS L R+ + Sbjct: 509 PPPPPPSARDELPDWNEVLPPWDREEDEVYPPGPYHPFPNYIRPRTLQPPSALRRRHYHH 568 Query: 185 RLPSS 199 LP S Sbjct: 569 ALPPS 573
>RNB_HHV2H (P89479) Probable RNA-binding protein| Length = 151 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Frame = +2 Query: 23 CAVLSHPPPPTNLSASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQSRRNRLPSSA 202 CA LS P P + S +PR AP R+ + P +PR+ R R+P S Sbjct: 72 CAALSIPKPSEAVRPSRIPR-------------AP----RVPREPRVPREPREPRVPRSP 114 Query: 203 AE-RFSGLLRPPFP 241 E R + R P P Sbjct: 115 REPRVPRIPRDPRP 128
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 41 PPPPTNLS---ASPLPRFLLPQFSRSEERIAPPGLARIRQTPSLPRQS 175 PPPPT L+ ASPLP LP + R + PP Q P LP Q+ Sbjct: 172 PPPPTTLNGPGASPLP---LPMY-RPDGLSGPPPPNAQYQPPPLPGQT 215
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/54 (31%), Positives = 21/54 (38%) Frame = -3 Query: 277 GNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116 G+++E D E S + RG P PALP G P P T P Sbjct: 1992 GSDEENLDSETSASTESLLEERAGRGASEGPPAPALPCPGAPTPSPLPTVAAPP 2045
>ARAA_BACST (Q9S467) L-arabinose isomerase (EC 5.3.1.4)| Length = 496 Score = 29.3 bits (64), Expect = 7.8 Identities = 28/76 (36%), Positives = 35/76 (46%) Frame = -1 Query: 378 LGAHHLLMARTYMPPAQTKNQPSNPSRQAVLPLSATTKNKPTTRKVGNGGLSSPENLSAA 199 LGAH L + T A T+ R V PLS K P R V +GG + N S Sbjct: 345 LGAHMLEVCPTI---AATR------PRIEVHPLSIGGKEDPA-RLVFDGGEGAAVNASLI 394 Query: 198 DDGNRFRLLCRGKEGV 151 D G+RFRL+ + V Sbjct: 395 DLGHRFRLIVNEVDAV 410
>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein-binding protein 1) (PTPRF-interacting protein-binding protein 1) (hSGT2) Length = 1011 Score = 29.3 bits (64), Expect = 7.8 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = -3 Query: 289 TTALGNNQEQTDDEEGRK-RRSQQPRESLRGRRRQPIPPALPGQGRSLPD-PGKTRR 125 +++LGN +++T D E +++ + R R +PP PGQ S+ D P TR+ Sbjct: 464 SSSLGNLKKETSDGEKETIQKTSEDRAPAESRPFGTLPPRPPGQDTSMDDNPFGTRK 520
>IF2_PSEPF (Q3KI84) Translation initiation factor IF-2| Length = 837 Score = 29.3 bits (64), Expect = 7.8 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = -3 Query: 283 ALGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDP--GKTRRRDPLL 110 A+ N Q +EE R R ++ R RQP P+ P + + P P R P++ Sbjct: 113 AVENAARQKAEEEARVRAEEEAR-------RQPAAPSAPAEAVAAPAPVAEPVREAAPVV 165 Query: 109 AAA 101 AAA Sbjct: 166 AAA 168
>TRUD_METCA (Q604M0) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 354 Score = 29.3 bits (64), Expect = 7.8 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -1 Query: 192 GNRFRLLCRGKEGVC 148 GNRFR++ RG EGVC Sbjct: 134 GNRFRIILRGLEGVC 148
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 7.8 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = -3 Query: 268 QEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPGKTRRRDP 116 +++ GR+RRS P + RRR+ PA P + R P P RRR P Sbjct: 536 RQKETSPRGRRRRSPSPPPT---RRRRSPSPAPPPRRRRTPTP-PPRRRTP 582
>POLG_HCVED (O39929) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3007 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/35 (48%), Positives = 18/35 (51%) Frame = -3 Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 R R R RGRR QPIP A +GRS PG Sbjct: 46 RATRKTSERSQPRGRR-QPIPKARRPEGRSWAQPG 79
>KPC1_NEUCR (P87253) Protein kinase C-like (EC 2.7.11.13)| Length = 1142 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = -3 Query: 295 GCTTALGNNQEQTDDEEGRKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 G + G++++ DD EG S P+E +RG + P S P PG Sbjct: 76 GASPMSGSHRQSVDDFEGYGAPSPPPKEDVRGHSSHQSQGSGPLMPASAPYPG 128
>POLG_HCVIN (Q913D4) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/35 (48%), Positives = 18/35 (51%) Frame = -3 Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 R R R RGRR QPIP A +GRS PG Sbjct: 46 RATRKTSERSQPRGRR-QPIPKARRPEGRSWAQPG 79
>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/35 (48%), Positives = 18/35 (51%) Frame = -3 Query: 241 RKRRSQQPRESLRGRRRQPIPPALPGQGRSLPDPG 137 R R R RGRR QPIP A +GRS PG Sbjct: 46 RATRKTSERSQPRGRR-QPIPKARRPEGRSWAQPG 79
>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein G3B) Length = 1718 Score = 23.9 bits (50), Expect(2) = 8.8 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Frame = -1 Query: 351 RTYMPPA------QTKNQPSNPSRQAVLPLSATTKNKPTTRKVGNGGLSS 220 RT PPA +T + P PS LPLS +T + K + LSS Sbjct: 640 RTASPPALPKIKAETDSDPMVPSCSLSLPLSISTTEAVSFHKEKSVYLSS 689 Score = 23.5 bits (49), Expect(2) = 8.8 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -3 Query: 229 SQQPRESLRGRRRQPIPPALPGQGRSLPDPGK 134 S P S R +RR PP+ P +L D GK Sbjct: 724 SMLPVTSSRFKRRTSSPPSSPQHSPALRDFGK 755 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,870,544 Number of Sequences: 219361 Number of extensions: 1344476 Number of successful extensions: 6965 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5967 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6906 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
