ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart56h06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 95.6 bits (48), Expect = 1e-16 Identities = 92/106 (86%), Gaps = 3/106 (2%) Strand = Plus / Minus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggcccggactc 512 |||||| ||||||||||||||||| || |||||||||||||||||| || |||||||| Sbjct: 20194773 ggaggatgagtgggaggtgcggccaggtgggatgctggtgcagaagaggagcccggacgg 20194714 Query: 513 ggacgcccccgccggcgcgcccgtgcccaccgtccgcctcaaggtc 558 |||||||| || |||||||||||||||| ||||| |||||||| Sbjct: 20194713 cgacgccccggc---cgcgcccgtgcccaccatccgcgtcaaggtc 20194671 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 350 cgtgccatgagaagatgatgcgcgccaagggcaaagctacattc 393 |||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 20194888 cgtgccatgagaagatgatgcgcgccaaggcgaaaggtacattc 20194845
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 95.6 bits (48), Expect = 1e-16 Identities = 92/106 (86%), Gaps = 3/106 (2%) Strand = Plus / Minus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggcccggactc 512 |||||| ||||||||||||||||| || |||||||||||||||||| || |||||||| Sbjct: 88273 ggaggatgagtgggaggtgcggccaggtgggatgctggtgcagaagaggagcccggacgg 88214 Query: 513 ggacgcccccgccggcgcgcccgtgcccaccgtccgcctcaaggtc 558 |||||||| || |||||||||||||||| ||||| |||||||| Sbjct: 88213 cgacgccccggc---cgcgcccgtgcccaccatccgcgtcaaggtc 88171 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 350 cgtgccatgagaagatgatgcgcgccaagggcaaagctacattc 393 |||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 88388 cgtgccatgagaagatgatgcgcgccaaggcgaaaggtacattc 88345
>dbj|AK105833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E09, full insert sequence Length = 2079 Score = 95.6 bits (48), Expect = 1e-16 Identities = 92/106 (86%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggcccggactc 512 |||||| ||||||||||||||||| || |||||||||||||||||| || |||||||| Sbjct: 746 ggaggatgagtgggaggtgcggccaggtgggatgctggtgcagaagaggagcccggacgg 805 Query: 513 ggacgcccccgccggcgcgcccgtgcccaccgtccgcctcaaggtc 558 |||||||| || |||||||||||||||| ||||| |||||||| Sbjct: 806 cgacgccccggc---cgcgcccgtgcccaccatccgcgtcaaggtc 848 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 350 cgtgccatgagaagatgatgcgcgccaagggcaaagctacattc 393 |||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 631 cgtgccatgagaagatgatgcgcgccaaggcgaaaggtacattc 674
>dbj|AK060485.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D08, full insert sequence Length = 1811 Score = 95.6 bits (48), Expect = 1e-16 Identities = 92/106 (86%), Gaps = 3/106 (2%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggcccggactc 512 |||||| ||||||||||||||||| || |||||||||||||||||| || |||||||| Sbjct: 478 ggaggatgagtgggaggtgcggccaggtgggatgctggtgcagaagaggagcccggacgg 537 Query: 513 ggacgcccccgccggcgcgcccgtgcccaccgtccgcctcaaggtc 558 |||||||| || |||||||||||||||| ||||| |||||||| Sbjct: 538 cgacgccccggc---cgcgcccgtgcccaccatccgcgtcaaggtc 580 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 350 cgtgccatgagaagatgatgcgcgccaagggcaaagctacattc 393 |||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 363 cgtgccatgagaagatgatgcgcgccaaggcgaaaggtacattc 406
>ref|XM_483628.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 451 aaggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggcccggac 510 |||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 61 aaggaggaggtgtgggaggtgcggcccggcggcatgctggtgcagaagcggagcccggag 120 Query: 511 tcgga 515 ||||| Sbjct: 121 tcgga 125
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 451 aaggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggcccggac 510 |||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 27351140 aaggaggaggtgtgggaggtgcggcccggcggcatgctggtgcagaagcggagcccggag 27351081 Query: 511 tcgga 515 ||||| Sbjct: 27351080 tcgga 27351076 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 cgcccccgccggcgcgcccgtgccc 540 ||||||||||| ||||||||||||| Sbjct: 14851632 cgcccccgccgccgcgcccgtgccc 14851656 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 cgcccccgccggcgcgcccgtgccc 540 ||||||||||| ||||||||||||| Sbjct: 14842703 cgcccccgccgccgcgcccgtgccc 14842727
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 451 aaggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggcccggac 510 |||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 52667 aaggaggaggtgtgggaggtgcggcccggcggcatgctggtgcagaagcggagcccggag 52608 Query: 511 tcgga 515 ||||| Sbjct: 52607 tcgga 52603
>gb|BT017955.1| Zea mays clone EL01N0522D10.c mRNA sequence Length = 933 Score = 85.7 bits (43), Expect = 1e-13 Identities = 43/43 (100%) Strand = Plus / Plus Query: 459 cgagtgggaggtgcggcccggcgggatgctggtgcagaagcgg 501 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 cgagtgggaggtgcggcccggcgggatgctggtgcagaagcgg 199
>ref|XM_463577.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 519 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 459 cgagtgggaggtgcggcccggcgggatgctggtgcagaagcgg 501 |||||||||||||||||| |||||||||||||||||||||||| Sbjct: 117 cgagtgggaggtgcggccgggcgggatgctggtgcagaagcgg 159
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 459 cgagtgggaggtgcggcccggcgggatgctggtgcagaagcgg 501 |||||||||||||||||| |||||||||||||||||||||||| Sbjct: 31665 cgagtgggaggtgcggccgggcgggatgctggtgcagaagcgg 31707
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 459 cgagtgggaggtgcggcccggcgggatgctggtgcagaagcgg 501 |||||||||||||||||| |||||||||||||||||||||||| Sbjct: 39477223 cgagtgggaggtgcggccgggcgggatgctggtgcagaagcgg 39477265 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcag 495 ||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 35575884 ggagggcgagtgggaggtccggcctggcgggatgctggtgcag 35575926
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 459 cgagtgggaggtgcggcccggcgggatgctggtgcagaagcgg 501 |||||||||||||||||| |||||||||||||||||||||||| Sbjct: 52237 cgagtgggaggtgcggccgggcgggatgctggtgcagaagcgg 52279
>dbj|AK058550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C08, full insert sequence Length = 1257 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 459 cgagtgggaggtgcggcccggcgggatgctggtgcagaagcgg 501 |||||||||||||||||| |||||||||||||||||||||||| Sbjct: 533 cgagtgggaggtgcggccgggcgggatgctggtgcagaagcgg 575
>ref|NM_185469.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1791 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggc 504 |||||| | ||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 411 ggaggaggtgtgggaggtgcggccaggcgggatgctggtgcagaagaggggc 462
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggc 504 |||||| | ||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 1413631 ggaggaggtgtgggaggtgcggccaggcgggatgctggtgcagaagaggggc 1413682
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggc 504 |||||| | ||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 20917 ggaggaggtgtgggaggtgcggccaggcgggatgctggtgcagaagaggggc 20968
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggc 504 |||||| | ||||||||||||||| ||||||||||||||||||||| ||||| Sbjct: 122170 ggaggaggtgtgggaggtgcggccaggcgggatgctggtgcagaagaggggc 122221
>dbj|AK065197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E17, full insert sequence Length = 1791 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcagaagcggggc 504 |||||| | ||||||||||||||| ||||||||||||||||| ||| ||||| Sbjct: 411 ggaggaggtgtgggaggtgcggccaggcgggatgctggtgcataagaggggc 462
>ref|NM_190444.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 843 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcag 495 ||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 42 ggagggcgagtgggaggtccggcctggcgggatgctggtgcag 84
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcag 495 ||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 106071 ggagggcgagtgggaggtccggcctggcgggatgctggtgcag 106113
>dbj|AK070208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047C12, full insert sequence Length = 1160 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgcggcccggcgggatgctggtgcag 495 ||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 348 ggagggcgagtgggaggtccggcctggcgggatgctggtgcag 390
>ref|XM_472926.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 504 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 460 gagtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||||| |||| || |||||||||||||||||| Sbjct: 139 gagtgggaggtgaggccgggagggatgctggtgcagaag 177
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 460 gagtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||||| |||| || |||||||||||||||||| Sbjct: 10630 gagtgggaggtgaggccgggagggatgctggtgcagaag 10668
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 460 gagtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||||| |||| || |||||||||||||||||| Sbjct: 118384 gagtgggaggtgaggccgggagggatgctggtgcagaag 118422
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 460 gagtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||||| |||| || |||||||||||||||||| Sbjct: 24121405 gagtgggaggtgaggccgggagggatgctggtgcagaag 24121443
>dbj|AK121996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110C02, full insert sequence Length = 1768 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 460 gagtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||||| |||| || |||||||||||||||||| Sbjct: 237 gagtgggaggtgaggccgggagggatgctggtgcagaag 275
>emb|AJ871387.1| Hordeum vulgare mRNA for BCL-2 binding anthanogene-1 (bag1 gene) Length = 900 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 454 gaggacgagtgggaggtgcggcccggcgggatgctggtgcag 495 |||| |||||||||||| ||||| ||||||||||| |||||| Sbjct: 61 gagggcgagtgggaggtccggccgggcgggatgctcgtgcag 102
>ref|XM_466548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 507 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 462 gtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||| |||| || |||||||||||||||||| Sbjct: 144 gtgggaggtgaggccgggagggatgctggtgcagaag 180
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 462 gtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||| |||| || |||||||||||||||||| Sbjct: 23248365 gtgggaggtgaggccgggagggatgctggtgcagaag 23248401
>dbj|AP005384.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_D02 Length = 112773 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 462 gtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||| |||| || |||||||||||||||||| Sbjct: 7511 gtgggaggtgaggccgggagggatgctggtgcagaag 7547
>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1568_B05 Length = 115325 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 462 gtgggaggtgcggcccggcgggatgctggtgcagaag 498 |||||||||| |||| || |||||||||||||||||| Sbjct: 105596 gtgggaggtgaggccgggagggatgctggtgcagaag 105632
>ref|XM_363900.1| Magnaporthe grisea 70-15 hypothetical protein (MG01826.4) partial mRNA Length = 1059 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 433 gcggccaaggaggcgctcaagg 454 |||||||||||||||||||||| Sbjct: 658 gcggccaaggaggcgctcaagg 679
>ref|XM_502764.1| Yarrowia lipolytica CLIB122, YALI0D12859g predicted mRNA Length = 1488 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 436 gccaaggaggcgctcaaggagg 457 |||||||||||||||||||||| Sbjct: 454 gccaaggaggcgctcaaggagg 475
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 436 gccaaggaggcgctcaaggagg 457 |||||||||||||||||||||| Sbjct: 1598441 gccaaggaggcgctcaaggagg 1598462
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 ccggcgggatgctggtgcaga 496 ||||||||||||||||||||| Sbjct: 3283456 ccggcgggatgctggtgcaga 3283476
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 cccgccggcgcgcccgtgccc 540 ||||||||||||||||||||| Sbjct: 2046715 cccgccggcgcgcccgtgccc 2046695
>dbj|AP005925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0030G18 Length = 167557 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 cgcccccgccggcgcgcccgtgccc 540 ||||||||||| ||||||||||||| Sbjct: 143719 cgcccccgccgccgcgcccgtgccc 143743 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 cgcccccgccggcgcgcccgtgccc 540 ||||||||||| ||||||||||||| Sbjct: 134790 cgcccccgccgccgcgcccgtgccc 134814
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 ggaatcggttgccgtcgtcgg 200 ||||||||||||||||||||| Sbjct: 2776941 ggaatcggttgccgtcgtcgg 2776921
>ref|XM_508646.1| PREDICTED: Pan troglodytes similar to hypothetical protein PP1665 (LOC451427), mRNA Length = 2389 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 1276 ggaggacgagtgggaggtgc 1295
>gb|BT025452.1| Bos taurus glycerophosphodiester phosphodiesterase domain containing 5 (GDPD5), mRNA, incomplete 3' cds Length = 1689 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 880 ggaggacgagtgggaggtgc 899
>ref|XM_874225.1| PREDICTED: Bos taurus similar to glycerophosphodiester phosphodiesterase domain containing 5, transcript variant 7 (LOC532719), mRNA Length = 1904 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 524 ggaggacgagtgggaggtgc 543
>ref|XM_874045.1| PREDICTED: Bos taurus similar to glycerophosphodiester phosphodiesterase domain containing 5, transcript variant 5 (LOC532719), mRNA Length = 1130 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 524 ggaggacgagtgggaggtgc 543
>ref|XM_873958.1| PREDICTED: Bos taurus similar to glycerophosphodiester phosphodiesterase domain containing 5, transcript variant 4 (LOC532719), mRNA Length = 826 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 220 ggaggacgagtgggaggtgc 239
>ref|XM_611877.2| PREDICTED: Bos taurus similar to glycerophosphodiester phosphodiesterase domain containing 5, transcript variant 1 (LOC532719), mRNA Length = 2842 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 524 ggaggacgagtgggaggtgc 543
>ref|XM_864637.1| PREDICTED: Bos taurus similar to glycerophosphodiester phosphodiesterase domain containing 5, transcript variant 2 (LOC532719), mRNA Length = 2441 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 1061 ggaggacgagtgggaggtgc 1080
>ref|XM_873670.1| PREDICTED: Bos taurus similar to glycerophosphodiester phosphodiesterase domain containing 5, transcript variant 3 (LOC532719), mRNA Length = 2328 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 524 ggaggacgagtgggaggtgc 543
>gb|AC092689.2| Homo sapiens BAC clone RP11-809G18 from 7, complete sequence Length = 27846 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agattctcggggctgctgag 228 |||||||||||||||||||| Sbjct: 16010 agattctcggggctgctgag 16029
>gb|AC127335.4| Mus musculus BAC clone RP23-150G24 from 8, complete sequence Length = 215910 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 cttggacgccatgaaggaga 412 |||||||||||||||||||| Sbjct: 6185 cttggacgccatgaaggaga 6166
>gb|BC011919.1| Homo sapiens cDNA clone IMAGE:4310564, **** WARNING: chimeric clone **** Length = 2777 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 500 ggaggacgagtgggaggtgc 519
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 526 ggcgcgcccgtgcccaccgtccgc 549 ||||||||||||| |||||||||| Sbjct: 46129 ggcgcgcccgtgctcaccgtccgc 46152
>gb|BC033391.1| Homo sapiens glycerophosphodiester phosphodiesterase domain containing 5, mRNA (cDNA clone MGC:42858 IMAGE:4830733), complete cds Length = 4179 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 1917 ggaggacgagtgggaggtgc 1936
>emb|AL833941.1|HSM805108 Homo sapiens mRNA; cDNA DKFZp434D0316 (from clone DKFZp434D0316) Length = 3229 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 964 ggaggacgagtgggaggtgc 983
>ref|NM_030792.4| Homo sapiens glycerophosphodiester phosphodiesterase domain containing 5 (GDPD5), mRNA Length = 3503 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 1196 ggaggacgagtgggaggtgc 1215
>dbj|AK074848.1| Homo sapiens cDNA FLJ90367 fis, clone NT2RP2004179 Length = 2261 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 15 ggaggacgagtgggaggtgc 34
>gb|AF318377.1|AF318377 Homo sapiens pp9363 mRNA, complete cds Length = 3503 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 1196 ggaggacgagtgggaggtgc 1215
>gb|AF318351.1|AF318351 Homo sapiens pp6037 mRNA, complete cds Length = 3049 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 783 ggaggacgagtgggaggtgc 802
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cagccgcagcgaggagagga 119 |||||||||||||||||||| Sbjct: 18487753 cagccgcagcgaggagagga 18487734
>dbj|AB056755.1| Macaca fascicularis brain cDNA clone:QccE-20904, similar to human hypothetical protein PP1665 (PP1665), mRNA, NM_030792.2 Length = 2389 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 93 ggaggacgagtgggaggtgc 112
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cgcccccgccggcgcgcccg 535 |||||||||||||||||||| Sbjct: 3873613 cgcccccgccggcgcgcccg 3873594 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 ccgccggcgcgcccgtgccc 540 |||||||||||||||||||| Sbjct: 596141 ccgccggcgcgcccgtgccc 596160
>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1457_D07 Length = 103688 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cagccgcagcgaggagagga 119 |||||||||||||||||||| Sbjct: 16509 cagccgcagcgaggagagga 16490
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_B11 Length = 102824 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cagccgcagcgaggagagga 119 |||||||||||||||||||| Sbjct: 79601 cagccgcagcgaggagagga 79582
>gb|BC018771.1| Homo sapiens glycerophosphodiester phosphodiesterase domain containing 5, mRNA (cDNA clone MGC:32046 IMAGE:4845520), complete cds Length = 3299 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 975 ggaggacgagtgggaggtgc 994
>dbj|AK098808.1| Homo sapiens cDNA FLJ25942 fis, clone JTH10541 Length = 2424 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 20 ggaggacgagtgggaggtgc 39
>dbj|AP001258.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-103D1, complete sequence Length = 128654 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aactccttccttgccccggc 170 |||||||||||||||||||| Sbjct: 116419 aactccttccttgccccggc 116400
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cgcccccgccggcgcgcccg 535 |||||||||||||||||||| Sbjct: 1093064 cgcccccgccggcgcgcccg 1093045
>gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, complete sequence Length = 158740 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 cttggacgccatgaaggaga 412 |||||||||||||||||||| Sbjct: 35924 cttggacgccatgaaggaga 35943
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gccgtcgtcggccgcggaga 209 |||||||||||||||||||| Sbjct: 1720732 gccgtcgtcggccgcggaga 1720751
>dbj|AP002815.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-939C17 Length = 174484 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 ggaggacgagtgggaggtgc 472 |||||||||||||||||||| Sbjct: 16091 ggaggacgagtgggaggtgc 16072
>dbj|AB026254.1| Acidiphilium sp. AIU409 estA gene for esterase, complete cds Length = 1884 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 200 gccgcggagagattctcggggctgctga 227 ||||||||||| ||| |||||||||||| Sbjct: 946 gccgcggagagtttcgcggggctgctga 973
>dbj|AB065097.1| Paralichthys olivaceus fIR-2 mRNA for insulin receptor, complete cds Length = 5519 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 aggaggacgagtgggaggtg 471 |||||||||||||||||||| Sbjct: 4124 aggaggacgagtgggaggtg 4143 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,446,061 Number of Sequences: 3902068 Number of extensions: 3446061 Number of successful extensions: 66702 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65799 Number of HSP's gapped (non-prelim): 899 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
