Clone Name | bart56h01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467840.1| Oryza sativa (japonica cultivar-group), mRNA Length = 940 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 211 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 235 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 294 Query: 271 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 295 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 349 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 79 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 85 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 144 Query: 139 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 145 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 204 Query: 199 tg 200 || Sbjct: 205 tg 206 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 41 ggctactcctccgccgaggacgaggaccccgccgccgccg 80 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 32 ggctactcctccgccgaggaagacgacccagccgccgccg 71 Score = 42.1 bits (21), Expect = 1.9 Identities = 60/73 (82%) Strand = Plus / Plus Query: 347 aagccgccacctcccggtgcggttgtggcggcgaaaccacagatggttgccatccgtgga 406 |||| ||| ||||| ||||| ||||||| || ||||| || ||||||| || |||| | Sbjct: 377 aagcagccgcctcctggtgccgttgtggtcgcaaaacctcaattggttgcaattcgtgaa 436 Query: 407 cgagttagcagtg 419 ||||||||||||| Sbjct: 437 cgagttagcagtg 449
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 211 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 31691885 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 31691944 Query: 271 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 31691945 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 31691999 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 79 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 31691735 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 31691794 Query: 139 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 31691795 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 31691854 Query: 199 tg 200 || Sbjct: 31691855 tg 31691856 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 41 ggctactcctccgccgaggacgaggaccccgccgccgccg 80 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 31691682 ggctactcctccgccgaggaagacgacccagccgccgccg 31691721 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 gacgaggaccccgccgccgccg 80 |||||||||||||||||||||| Sbjct: 33390985 gacgaggaccccgccgccgccg 33391006 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 ccgcccccgcgtaaaccctagcccc 193 ||||||||||| ||||||||||||| Sbjct: 18531451 ccgcccccgcgaaaaccctagcccc 18531475
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 211 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 71672 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 71731 Query: 271 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 71732 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 71786 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 79 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 71522 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 71581 Query: 139 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 71582 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 71641 Query: 199 tg 200 || Sbjct: 71642 tg 71643 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 41 ggctactcctccgccgaggacgaggaccccgccgccgccg 80 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 71469 ggctactcctccgccgaggaagacgacccagccgccgccg 71508
>dbj|AK067176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097D23, full insert sequence Length = 939 Score = 77.8 bits (39), Expect = 3e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 211 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 234 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 293 Query: 271 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 294 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 348 Score = 67.9 bits (34), Expect = 3e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 79 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 84 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 143 Query: 139 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 144 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 203 Query: 199 tg 200 || Sbjct: 204 tg 205 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 41 ggctactcctccgccgaggacgaggaccccgccgccgccg 80 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 31 ggctactcctccgccgaggaagacgacccagccgccgccg 70 Score = 42.1 bits (21), Expect = 1.9 Identities = 60/73 (82%) Strand = Plus / Plus Query: 347 aagccgccacctcccggtgcggttgtggcggcgaaaccacagatggttgccatccgtgga 406 |||| ||| ||||| ||||| ||||||| || ||||| || ||||||| || |||| | Sbjct: 376 aagcagccgcctcctggtgccgttgtggtcgcaaaacctcaattggttgcaattcgtgaa 435 Query: 407 cgagttagcagtg 419 ||||||||||||| Sbjct: 436 cgagttagcagtg 448
>gb|AY111222.1| Zea mays CL30969_1 mRNA sequence Length = 953 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 356 cctcccggtgcggttgtggcggcgaaaccacagatggttgccatccg 402 ||||| ||||| ||||||| ||| ||||||||||| ||||| ||||| Sbjct: 596 cctccaggtgctgttgtggtggcaaaaccacagatagttgctatccg 550 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 gggctactcctccgccgaggacga 63 ||||||||||||||| |||||||| Sbjct: 939 gggctactcctccgctgaggacga 916
>gb|AY022885.1| Oryza sativa microsatellite MRG5210 containing (CGG)X8, closest to marker C253, genomic sequence Length = 224 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 gacgaggaccccgccgccgccg 80 |||||||||||||||||||||| Sbjct: 134 gacgaggaccccgccgccgccg 113
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 289 ggaggtcggggaggcgctcggcgtgctcga 318 |||||| || |||||||||||||||||||| Sbjct: 4418213 ggaggtgggcgaggcgctcggcgtgctcga 4418242 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 ccgaggacgaggaccccgccgccg 77 |||||||||||||| ||||||||| Sbjct: 1241128 ccgaggacgaggacgccgccgccg 1241151 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 ctcctccgccgaggacgagg 65 |||||||||||||||||||| Sbjct: 664330 ctcctccgccgaggacgagg 664311
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1715_H01 Length = 138733 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 gacgaggaccccgccgccgccg 80 |||||||||||||||||||||| Sbjct: 131735 gacgaggaccccgccgccgccg 131756
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 gacgaggaccccgccgccgccg 80 |||||||||||||||||||||| Sbjct: 21604 gacgaggaccccgccgccgccg 21625
>ref|XM_465951.1| Oryza sativa (japonica cultivar-group), mRNA Length = 453 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 ccgcccccgcgtaaaccctagcccc 193 ||||||||||| ||||||||||||| Sbjct: 255 ccgcccccgcgaaaaccctagcccc 279
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 aggcgctcggcgtgctcgatcgccg 324 |||||||||||| |||||||||||| Sbjct: 3712248 aggcgctcggcgagctcgatcgccg 3712224
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 gcgctcggcgtgctcgatcgc 322 ||||||||||||||||||||| Sbjct: 1121480 gcgctcggcgtgctcgatcgc 1121460
>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A), NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete cds Length = 73617 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 169 ccgcccccgcgtaaaccctagcccc 193 ||||||||||| ||||||||||||| Sbjct: 72817 ccgcccccgcgaaaaccctagcccc 72793
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 aggcgctcggcgtgctcgatcgccg 324 |||||||||||| |||||||||||| Sbjct: 246970 aggcgctcggcgagctcgatcgccg 246946
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 300 aggcgctcggcgtgctcgatcgccg 324 |||||||||||| |||||||||||| Sbjct: 228882 aggcgctcggcgagctcgatcgccg 228858
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 52 cgccgaggacgaggaccccgccgccgccg 80 |||||| ||||||||| |||||||||||| Sbjct: 22541582 cgccgacgacgaggacgccgccgccgccg 22541554
>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198170 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 cccgccgccgccgagctcagc 88 ||||||||||||||||||||| Sbjct: 75024 cccgccgccgccgagctcagc 75004
>gb|AC093642.5| Homo sapiens BAC clone RP11-341N2 from 2, complete sequence Length = 158203 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 275 gtggcccagcccgaggaggtcggggaggc 303 |||||||||||||||| || ||||||||| Sbjct: 51970 gtggcccagcccgaggtggccggggaggc 51998
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 ccgcccccgcgtaaaccctagcccc 193 ||||||||||| ||||||||||||| Sbjct: 72590 ccgcccccgcgaaaaccctagcccc 72614
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 52 cgccgaggacgaggaccccgccgccgccg 80 |||||| ||||||||| |||||||||||| Sbjct: 22469927 cgccgacgacgaggacgccgccgccgccg 22469899
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 52 cgccgaggacgaggaccccgccgccgccg 80 |||||| ||||||||| |||||||||||| Sbjct: 44161 cgccgacgacgaggacgccgccgccgccg 44133
>gb|AE010424.1| Methanopyrus kandleri AV19 section 123 of 157 of the complete genome Length = 11138 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 ccgaggaggtcggggaggcgctcg 308 ||||||||||| |||||||||||| Sbjct: 4314 ccgaggaggtccgggaggcgctcg 4337
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 cgatcgccgctccaactcca 335 |||||||||||||||||||| Sbjct: 1319059 cgatcgccgctccaactcca 1319078
>emb|BX119319.7| Zebrafish DNA sequence from clone CH211-195K14 in linkage group 5, complete sequence Length = 184366 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 525 ctccaggttctgttgatggaaaga 548 ||||| |||||||||||||||||| Sbjct: 44690 ctccaagttctgttgatggaaaga 44713
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcgctcggcgtgctcgatcg 321 |||||||||||||||||||| Sbjct: 1357860 gcgctcggcgtgctcgatcg 1357841
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 7.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 51 ccgccgaggacgaggaccccgccgccgc 78 |||||||||||||||| ||||||||||| Sbjct: 3343 ccgccgaggacgagga-cccgccgccgc 3369
>gb|DQ322650.2| Streptomyces sp. 44414 plasmid pRL2, complete sequence Length = 20252 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aggaccccgccgccgccgag 82 |||||||||||||||||||| Sbjct: 7903 aggaccccgccgccgccgag 7922
>gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequence Length = 34772 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 ggcgctcggcgtgctcgatc 320 |||||||||||||||||||| Sbjct: 12581 ggcgctcggcgtgctcgatc 12562
>gb|AE009851.1|AE009851 Pyrobaculum aerophilum strain IM2 section 106 of 201 of the complete genome Length = 12016 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cctcgctgccctcggcgcta 226 |||||||||||||||||||| Sbjct: 8846 cctcgctgccctcggcgcta 8827
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cggcgtgctcgatcgccgct 326 |||||||||||||||||||| Sbjct: 95525 cggcgtgctcgatcgccgct 95506
>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence Length = 190701 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 aaccacagatggttgccatc 400 |||||||||||||||||||| Sbjct: 148125 aaccacagatggttgccatc 148144
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 gaggcgctcggcgtgctcga 318 |||||||||||||||||||| Sbjct: 155820 gaggcgctcggcgtgctcga 155801
>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5, complete sequence Length = 223754 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 525 ctccaggttctgttgatggaaaga 548 ||||| |||||||||||||||||| Sbjct: 167633 ctccaagttctgttgatggaaaga 167656
>dbj|AK121167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080K05, full insert sequence Length = 1975 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gacgaggaccccgccgccgccgag 82 ||||| |||||||||||||||||| Sbjct: 654 gacgacgaccccgccgccgccgag 677
>gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequence Length = 54288 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 cgaggacgaggaccccgccg 74 |||||||||||||||||||| Sbjct: 25991 cgaggacgaggaccccgccg 25972
>emb|AL844852.11| Mouse DNA sequence from clone RP23-260N23 on chromosome 2, complete sequence Length = 257676 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 gcagaggagaaagccgccac 356 |||||||||||||||||||| Sbjct: 166366 gcagaggagaaagccgccac 166385 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,957,134 Number of Sequences: 3902068 Number of extensions: 3957134 Number of successful extensions: 79733 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 78530 Number of HSP's gapped (non-prelim): 1204 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)