ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467840.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
3dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
4dbj|AK067176.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
5gb|AY111222.1| Zea mays CL30969_1 mRNA sequence 46 0.12
6gb|AY022885.1| Oryza sativa microsatellite MRG5210 containing (C... 44 0.48
7gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.48
8dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
9dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
10ref|XM_465951.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
11gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.9
12gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.9
13gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like... 42 1.9
14emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.9
15emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.9
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
17gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Can... 42 1.9
18gb|AC093642.5| Homo sapiens BAC clone RP11-341N2 from 2, complet... 42 1.9
19dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
21emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.9
22gb|AE010424.1| Methanopyrus kandleri AV19 section 123 of 157 of ... 40 7.5
23gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 7.5
24emb|BX119319.7| Zebrafish DNA sequence from clone CH211-195K14 i... 40 7.5
25emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 7.5
26emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 40 7.5
27gb|DQ322650.2| Streptomyces sp. 44414 plasmid pRL2, complete seq... 40 7.5
28gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequ... 40 7.5
29gb|AE009851.1|AE009851 Pyrobaculum aerophilum strain IM2 section... 40 7.5
30gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.5
31gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8... 40 7.5
32dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.5
33emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in ... 40 7.5
34dbj|AK121167.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
35gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequ... 40 7.5
36emb|AL844852.11| Mouse DNA sequence from clone RP23-260N23 on ch... 40 7.5

>ref|XM_467840.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 940

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                       
Query: 211 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270
           ||||||||| || || |||| |||||| ||||| || ||||| ||||  ||||| |||  
Sbjct: 235 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 294

                                                                  
Query: 271 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325
           |||||| ||| |||||||||||| || |||||||||||| |||||||| ||||||
Sbjct: 295 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 349



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                       
Query: 79  cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138
           |||||| ||||||||||||||||| || || || || |||||||| ||||| || |||  
Sbjct: 85  cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 144

                                                                       
Query: 139 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198
            |||||| | |||| ||| || || |||||||||||||||  ||||||||||| ||| ||
Sbjct: 145 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 204

             
Query: 199 tg 200
           ||
Sbjct: 205 tg 206



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 41 ggctactcctccgccgaggacgaggaccccgccgccgccg 80
          |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 32 ggctactcctccgccgaggaagacgacccagccgccgccg 71



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                       
Query: 347 aagccgccacctcccggtgcggttgtggcggcgaaaccacagatggttgccatccgtgga 406
           |||| ||| ||||| ||||| |||||||  || ||||| ||  ||||||| || |||| |
Sbjct: 377 aagcagccgcctcctggtgccgttgtggtcgcaaaacctcaattggttgcaattcgtgaa 436

                        
Query: 407 cgagttagcagtg 419
           |||||||||||||
Sbjct: 437 cgagttagcagtg 449



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                            
Query: 211      gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270
                ||||||||| || || |||| |||||| ||||| || ||||| ||||  ||||| |||  
Sbjct: 31691885 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 31691944

                                                                       
Query: 271      tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325
                |||||| ||| |||||||||||| || |||||||||||| |||||||| ||||||
Sbjct: 31691945 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 31691999



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                            
Query: 79       cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138
                |||||| ||||||||||||||||| || || || || |||||||| ||||| || |||  
Sbjct: 31691735 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 31691794

                                                                            
Query: 139      gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198
                 |||||| | |||| ||| || || |||||||||||||||  ||||||||||| ||| ||
Sbjct: 31691795 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 31691854

                  
Query: 199      tg 200
                ||
Sbjct: 31691855 tg 31691856



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 41       ggctactcctccgccgaggacgaggaccccgccgccgccg 80
                |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 31691682 ggctactcctccgccgaggaagacgacccagccgccgccg 31691721



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 59       gacgaggaccccgccgccgccg 80
                ||||||||||||||||||||||
Sbjct: 33390985 gacgaggaccccgccgccgccg 33391006



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 169      ccgcccccgcgtaaaccctagcccc 193
                ||||||||||| |||||||||||||
Sbjct: 18531451 ccgcccccgcgaaaaccctagcccc 18531475



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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1288_G09
          Length = 109672

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                         
Query: 211   gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270
             ||||||||| || || |||| |||||| ||||| || ||||| ||||  ||||| |||  
Sbjct: 71672 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 71731

                                                                    
Query: 271   tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325
             |||||| ||| |||||||||||| || |||||||||||| |||||||| ||||||
Sbjct: 71732 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 71786



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                         
Query: 79    cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138
             |||||| ||||||||||||||||| || || || || |||||||| ||||| || |||  
Sbjct: 71522 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 71581

                                                                         
Query: 139   gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198
              |||||| | |||| ||| || || |||||||||||||||  ||||||||||| ||| ||
Sbjct: 71582 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 71641

               
Query: 199   tg 200
             ||
Sbjct: 71642 tg 71643



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 41    ggctactcctccgccgaggacgaggaccccgccgccgccg 80
             |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 71469 ggctactcctccgccgaggaagacgacccagccgccgccg 71508



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>dbj|AK067176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097D23, full
           insert sequence
          Length = 939

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                       
Query: 211 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 270
           ||||||||| || || |||| |||||| ||||| || ||||| ||||  ||||| |||  
Sbjct: 234 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 293

                                                                  
Query: 271 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 325
           |||||| ||| |||||||||||| || |||||||||||| |||||||| ||||||
Sbjct: 294 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 348



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                       
Query: 79  cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 138
           |||||| ||||||||||||||||| || || || || |||||||| ||||| || |||  
Sbjct: 84  cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 143

                                                                       
Query: 139 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 198
            |||||| | |||| ||| || || |||||||||||||||  ||||||||||| ||| ||
Sbjct: 144 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 203

             
Query: 199 tg 200
           ||
Sbjct: 204 tg 205



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 41 ggctactcctccgccgaggacgaggaccccgccgccgccg 80
          |||||||||||||||||||| || ||||| ||||||||||
Sbjct: 31 ggctactcctccgccgaggaagacgacccagccgccgccg 70



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                       
Query: 347 aagccgccacctcccggtgcggttgtggcggcgaaaccacagatggttgccatccgtgga 406
           |||| ||| ||||| ||||| |||||||  || ||||| ||  ||||||| || |||| |
Sbjct: 376 aagcagccgcctcctggtgccgttgtggtcgcaaaacctcaattggttgcaattcgtgaa 435

                        
Query: 407 cgagttagcagtg 419
           |||||||||||||
Sbjct: 436 cgagttagcagtg 448



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>gb|AY111222.1| Zea mays CL30969_1 mRNA sequence
          Length = 953

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 356 cctcccggtgcggttgtggcggcgaaaccacagatggttgccatccg 402
           ||||| ||||| ||||||| ||| ||||||||||| ||||| |||||
Sbjct: 596 cctccaggtgctgttgtggtggcaaaaccacagatagttgctatccg 550



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 40  gggctactcctccgccgaggacga 63
           ||||||||||||||| ||||||||
Sbjct: 939 gggctactcctccgctgaggacga 916



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>gb|AY022885.1| Oryza sativa microsatellite MRG5210 containing (CGG)X8, closest to
           marker C253, genomic sequence
          Length = 224

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 59  gacgaggaccccgccgccgccg 80
           ||||||||||||||||||||||
Sbjct: 134 gacgaggaccccgccgccgccg 113



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 289     ggaggtcggggaggcgctcggcgtgctcga 318
               |||||| || ||||||||||||||||||||
Sbjct: 4418213 ggaggtgggcgaggcgctcggcgtgctcga 4418242



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 54      ccgaggacgaggaccccgccgccg 77
               |||||||||||||| |||||||||
Sbjct: 1241128 ccgaggacgaggacgccgccgccg 1241151



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     ctcctccgccgaggacgagg 65
              ||||||||||||||||||||
Sbjct: 664330 ctcctccgccgaggacgagg 664311



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>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1715_H01
          Length = 138733

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 59     gacgaggaccccgccgccgccg 80
              ||||||||||||||||||||||
Sbjct: 131735 gacgaggaccccgccgccgccg 131756



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>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1316_E06
          Length = 110197

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 59    gacgaggaccccgccgccgccg 80
             ||||||||||||||||||||||
Sbjct: 21604 gacgaggaccccgccgccgccg 21625



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>ref|XM_465951.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 453

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 169 ccgcccccgcgtaaaccctagcccc 193
           ||||||||||| |||||||||||||
Sbjct: 255 ccgcccccgcgaaaaccctagcccc 279



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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 300     aggcgctcggcgtgctcgatcgccg 324
               |||||||||||| ||||||||||||
Sbjct: 3712248 aggcgctcggcgagctcgatcgccg 3712224



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 302     gcgctcggcgtgctcgatcgc 322
               |||||||||||||||||||||
Sbjct: 1121480 gcgctcggcgtgctcgatcgc 1121460



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>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A),
             NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C
             (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete
             cds
          Length = 73617

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 169   ccgcccccgcgtaaaccctagcccc 193
             ||||||||||| |||||||||||||
Sbjct: 72817 ccgcccccgcgaaaaccctagcccc 72793



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>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13
          Length = 349563

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 300    aggcgctcggcgtgctcgatcgccg 324
              |||||||||||| ||||||||||||
Sbjct: 246970 aggcgctcggcgagctcgatcgccg 246946



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>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14
          Length = 308050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 300    aggcgctcggcgtgctcgatcgccg 324
              |||||||||||| ||||||||||||
Sbjct: 228882 aggcgctcggcgagctcgatcgccg 228858



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 52       cgccgaggacgaggaccccgccgccgccg 80
                |||||| ||||||||| ||||||||||||
Sbjct: 22541582 cgccgacgacgaggacgccgccgccgccg 22541554



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>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 198170

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    cccgccgccgccgagctcagc 88
             |||||||||||||||||||||
Sbjct: 75024 cccgccgccgccgagctcagc 75004



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>gb|AC093642.5| Homo sapiens BAC clone RP11-341N2 from 2, complete sequence
          Length = 158203

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 275   gtggcccagcccgaggaggtcggggaggc 303
             |||||||||||||||| || |||||||||
Sbjct: 51970 gtggcccagcccgaggtggccggggaggc 51998



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>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1789_D08
          Length = 128673

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 169   ccgcccccgcgtaaaccctagcccc 193
             ||||||||||| |||||||||||||
Sbjct: 72590 ccgcccccgcgaaaaccctagcccc 72614



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 52       cgccgaggacgaggaccccgccgccgccg 80
                |||||| ||||||||| ||||||||||||
Sbjct: 22469927 cgccgacgacgaggacgccgccgccgccg 22469899



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>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131441

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 52    cgccgaggacgaggaccccgccgccgccg 80
             |||||| ||||||||| ||||||||||||
Sbjct: 44161 cgccgacgacgaggacgccgccgccgccg 44133



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>gb|AE010424.1| Methanopyrus kandleri AV19 section 123 of 157 of the complete genome
          Length = 11138

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 285  ccgaggaggtcggggaggcgctcg 308
            ||||||||||| ||||||||||||
Sbjct: 4314 ccgaggaggtccgggaggcgctcg 4337



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     cgatcgccgctccaactcca 335
               ||||||||||||||||||||
Sbjct: 1319059 cgatcgccgctccaactcca 1319078



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>emb|BX119319.7| Zebrafish DNA sequence from clone CH211-195K14 in linkage group 5,
             complete sequence
          Length = 184366

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 525   ctccaggttctgttgatggaaaga 548
             ||||| ||||||||||||||||||
Sbjct: 44690 ctccaagttctgttgatggaaaga 44713



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 302     gcgctcggcgtgctcgatcg 321
               ||||||||||||||||||||
Sbjct: 1357860 gcgctcggcgtgctcgatcg 1357841



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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 51   ccgccgaggacgaggaccccgccgccgc 78
            |||||||||||||||| |||||||||||
Sbjct: 3343 ccgccgaggacgagga-cccgccgccgc 3369



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>gb|DQ322650.2| Streptomyces sp. 44414 plasmid pRL2, complete sequence
          Length = 20252

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   aggaccccgccgccgccgag 82
            ||||||||||||||||||||
Sbjct: 7903 aggaccccgccgccgccgag 7922



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>gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequence
          Length = 34772

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   ggcgctcggcgtgctcgatc 320
             ||||||||||||||||||||
Sbjct: 12581 ggcgctcggcgtgctcgatc 12562



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>gb|AE009851.1|AE009851 Pyrobaculum aerophilum strain IM2 section 106 of 201 of the complete
            genome
          Length = 12016

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  cctcgctgccctcggcgcta 226
            ||||||||||||||||||||
Sbjct: 8846 cctcgctgccctcggcgcta 8827



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   cggcgtgctcgatcgccgct 326
             ||||||||||||||||||||
Sbjct: 95525 cggcgtgctcgatcgccgct 95506



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>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence
          Length = 190701

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    aaccacagatggttgccatc 400
              ||||||||||||||||||||
Sbjct: 148125 aaccacagatggttgccatc 148144



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    gaggcgctcggcgtgctcga 318
              ||||||||||||||||||||
Sbjct: 155820 gaggcgctcggcgtgctcga 155801



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>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5, complete
              sequence
          Length = 223754

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 525    ctccaggttctgttgatggaaaga 548
              ||||| ||||||||||||||||||
Sbjct: 167633 ctccaagttctgttgatggaaaga 167656



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>dbj|AK121167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080K05, full
           insert sequence
          Length = 1975

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 59  gacgaggaccccgccgccgccgag 82
           ||||| ||||||||||||||||||
Sbjct: 654 gacgacgaccccgccgccgccgag 677



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>gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequence
          Length = 54288

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    cgaggacgaggaccccgccg 74
             ||||||||||||||||||||
Sbjct: 25991 cgaggacgaggaccccgccg 25972



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>emb|AL844852.11| Mouse DNA sequence from clone RP23-260N23 on chromosome 2, complete
              sequence
          Length = 257676

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    gcagaggagaaagccgccac 356
              ||||||||||||||||||||
Sbjct: 166366 gcagaggagaaagccgccac 166385


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,957,134
Number of Sequences: 3902068
Number of extensions: 3957134
Number of successful extensions: 79733
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 78530
Number of HSP's gapped (non-prelim): 1204
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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