Clone Information

BLAST Search Result

Clone Name	bart56g12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	303	3e-79
2	dbj\|AP005612.3\| Oryza sativa (japonica cultivar-group) genomic D...	303	3e-79
3	dbj\|AK070852.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	303	3e-79
4	dbj\|AK067188.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	303	3e-79
5	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
6	dbj\|AP005763.3\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
7	gb\|AY110647.1\| Zea mays CL20249_1 mRNA sequence	100	1e-17
8	dbj\|AK063619.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	94	6e-16
9	gb\|AY105569.1\| Zea mays PCO107462 mRNA sequence	82	2e-12
10	dbj\|AK107093.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	68	3e-08
11	gb\|AC137002.2\| Oryza sativa (japonica cultivar-group) chromosome...	52	0.002
12	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
13	ref\|XM_367503.1\| Magnaporthe grisea 70-15 chromosome III hypothe...	46	0.13
14	ref\|XM_963865.1\| PREDICTED: Tribolium castaneum similar to CG936...	46	0.13
15	gb\|AC138367.14\| Mus musculus chromosome 8, clone RP23-296G24, co...	42	2.0
16	gb\|CP000125.1\| Burkholderia pseudomallei 1710b chromosome II, co...	42	2.0
17	gb\|CP000354.1\| Ralstonia metallidurans CH34 plasmid pMOL30, comp...	42	2.0
18	gb\|AC146014.2\| Pan troglodytes BAC clone RP43-128N21 from 7, com...	42	2.0
19	emb\|X71400.2\|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30	42	2.0
20	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	42	2.0
21	gb\|AY040383.1\| Castanopsis fargesii isolate 1455 internal transc...	42	2.0
22	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	42	2.0
23	gb\|CP000157.1\| Erythrobacter litoralis HTCC2594, complete genome	42	2.0
24	emb\|AJ133724.1\|MAU133724 Mycobacterium aurum GGPP synthase, crtI...	42	2.0
25	dbj\|AP003969.2\| Homo sapiens genomic DNA, chromosome 11q, clone:...	42	2.0
26	emb\|AL732296.11\| Mouse DNA sequence from clone RP23-131P6 on chr...	42	2.0
27	ref\|XM_477796.1\| Oryza sativa (japonica cultivar-group), mRNA	40	7.7
28	ref\|XM_418650.1\| PREDICTED: Gallus gallus similar to lanosterol ...	40	7.7
29	ref\|XM_824064.1\| Trypanosoma brucei TREU927 delta tubulin (Tb11....	40	7.7
30	emb\|CR383667.11\| Zebrafish DNA sequence from clone CH211-229P19 ...	40	7.7
31	gb\|CP000316.1\| Polaromonas sp. JS666, complete genome	40	7.7
32	emb\|AL939107.1\|SCO939107 Streptomyces coelicolor A3(2) complete ...	40	7.7
33	emb\|AJ630366.1\| Canis familiaris MHC class II region on chromoso...	40	7.7
34	gb\|CP000239.1\| Synechococcus sp. JA-3-3Ab, complete genome	40	7.7
35	gb\|AE006016.1\| Caulobacter crescentus CB15 section 342 of 359 of...	40	7.7
36	gb\|AC087240.17\| Homo sapiens 12p BAC RP11-752F20 (Roswell Park C...	40	7.7
37	gb\|AC092811.2\| Homo sapiens chromosome 1 clone RP11-496N12, comp...	40	7.7
38	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	7.7
39	dbj\|AB200353.1\| Sphingomonas sp. 14DN-61 phnI, phnJ, phnK, phnN ...	40	7.7
40	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
41	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
42	gb\|AF216742.3\|AF216742 Trypanosoma brucei delta tubulin gene, co...	40	7.7
43	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	7.7
44	gb\|AC094011.2\| Gallus gallus clone WAG-50C6, complete sequence	40	7.7
45	dbj\|AP005200.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
46	dbj\|AP005558.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
47	dbj\|AP005546.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.7
48	gb\|AE015924.1\| Porphyromonas gingivalis W83, complete genome	40	7.7
49	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	40	7.7
50	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	7.7

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  303 bits (153), Expect = 3e-79
 Identities = 201/217 (92%)
 Strand = Plus / Plus

                                                                            
Query: 113      atgatccagctcctgttcgtggtgctcgtcgccgaggcggccgtggcgacggtgctgctc 172
                ||||||||||| |||||| |||||||||| || ||||||||||||||| ||||||| |||
Sbjct: 12859101 atgatccagctgctgttcctggtgctcgtggcggaggcggccgtggcggcggtgctcctc 12859160

                                                                            
Query: 173      ttcaagacgccgctgcggaagctcgccatgctgggcctcgaccgcctcaagcgcggccgc 232
                ||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||||
Sbjct: 12859161 ttcaagacgccgctgcggaagctcgccgtgatggggatcgaccgcctcaagcgcggccgc 12859220

                                                                            
Query: 233      cgggcgcccgtcgccgtcaagaccgtcgccggcgtcgtcttcacgctcctcgcctccaca 292
                || |||||||||||||||||||||||||||||||||||| || | || ||||||||||| 
Sbjct: 12859221 cgcgcgcccgtcgccgtcaagaccgtcgccggcgtcgtcctcgccctgctcgcctccacg 12859280

                                                     
Query: 293      ctctacagcatggccgagatcagcggccgcgccgggg 329
                |||||||||||||||||||||||||||||||||||||
Sbjct: 12859281 ctctacagcatggccgagatcagcggccgcgccgggg 12859317



 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Plus

                                                                            
Query: 425      tttcttgctctagatattgaccgactccaccaatatataagagaactacgtgggctaaag 484
                ||||||||||||| ||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct: 12862461 tttcttgctctagttattgaccggctccaccaatacatcagagagctacgtgggctaaag 12862520

                                                                            
Query: 485      aagaatgttgaggctgtatcgaagcagaacaaaatgtctgaggaaggaaaacatggaaga 544
                |||||||||||||| ||| | ||||| || |||||||  ||||||| |||||||||||||
Sbjct: 12862521 aagaatgttgaggccgtaactaagcataataaaatgttggaggaagcaaaacatggaaga 12862580

                                       
Query: 545      tctcaggagatagcgaaatacca 567
                ||| |||||| |  |||||||||
Sbjct: 12862581 tctgaggagacaaagaaatacca 12862603



 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                            
Query: 338      ggcgggggcggcgccgccctctctcccaccgaccaggtcctcttctcgcgccacctcctc 397
                ||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 12859338 ggcggcggcggcgcctccctctcgcccaccgaccaggtcctcttctcgcggcacctcctc 12859397

                                  
Query: 398      gaggcgtccctcatgggt 415
                ||||| ||||||||||||
Sbjct: 12859398 gaggcatccctcatgggt 12859415

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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0073A18
          Length = 176755

 Score =  303 bits (153), Expect = 3e-79
 Identities = 201/217 (92%)
 Strand = Plus / Plus

                                                                         
Query: 113   atgatccagctcctgttcgtggtgctcgtcgccgaggcggccgtggcgacggtgctgctc 172
             ||||||||||| |||||| |||||||||| || ||||||||||||||| ||||||| |||
Sbjct: 78583 atgatccagctgctgttcctggtgctcgtggcggaggcggccgtggcggcggtgctcctc 78642

                                                                         
Query: 173   ttcaagacgccgctgcggaagctcgccatgctgggcctcgaccgcctcaagcgcggccgc 232
             ||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||||
Sbjct: 78643 ttcaagacgccgctgcggaagctcgccgtgatggggatcgaccgcctcaagcgcggccgc 78702

                                                                         
Query: 233   cgggcgcccgtcgccgtcaagaccgtcgccggcgtcgtcttcacgctcctcgcctccaca 292
             || |||||||||||||||||||||||||||||||||||| || | || ||||||||||| 
Sbjct: 78703 cgcgcgcccgtcgccgtcaagaccgtcgccggcgtcgtcctcgccctgctcgcctccacg 78762

                                                  
Query: 293   ctctacagcatggccgagatcagcggccgcgccgggg 329
             |||||||||||||||||||||||||||||||||||||
Sbjct: 78763 ctctacagcatggccgagatcagcggccgcgccgggg 78799



 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Plus

                                                                         
Query: 425   tttcttgctctagatattgaccgactccaccaatatataagagaactacgtgggctaaag 484
             ||||||||||||| ||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct: 81943 tttcttgctctagttattgaccggctccaccaatacatcagagagctacgtgggctaaag 82002

                                                                         
Query: 485   aagaatgttgaggctgtatcgaagcagaacaaaatgtctgaggaaggaaaacatggaaga 544
             |||||||||||||| ||| | ||||| || |||||||  ||||||| |||||||||||||
Sbjct: 82003 aagaatgttgaggccgtaactaagcataataaaatgttggaggaagcaaaacatggaaga 82062

                                    
Query: 545   tctcaggagatagcgaaatacca 567
             ||| |||||| |  |||||||||
Sbjct: 82063 tctgaggagacaaagaaatacca 82085



 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                         
Query: 338   ggcgggggcggcgccgccctctctcccaccgaccaggtcctcttctcgcgccacctcctc 397
             ||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 78820 ggcggcggcggcgcctccctctcgcccaccgaccaggtcctcttctcgcggcacctcctc 78879

                               
Query: 398   gaggcgtccctcatgggt 415
             ||||| ||||||||||||
Sbjct: 78880 gaggcatccctcatgggt 78897

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>dbj|AK070852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065A17, full
           insert sequence
          Length = 1188

 Score =  303 bits (153), Expect = 3e-79
 Identities = 201/217 (92%)
 Strand = Plus / Plus

                                                                       
Query: 113 atgatccagctcctgttcgtggtgctcgtcgccgaggcggccgtggcgacggtgctgctc 172
           ||||||||||| |||||| |||||||||| || ||||||||||||||| ||||||| |||
Sbjct: 193 atgatccagctgctgttcctggtgctcgtggcggaggcggccgtggcggcggtgctcctc 252

                                                                       
Query: 173 ttcaagacgccgctgcggaagctcgccatgctgggcctcgaccgcctcaagcgcggccgc 232
           ||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||||
Sbjct: 253 ttcaagacgccgctgcggaagctcgccgtgatggggatcgaccgcctcaagcgcggccgc 312

                                                                       
Query: 233 cgggcgcccgtcgccgtcaagaccgtcgccggcgtcgtcttcacgctcctcgcctccaca 292
           || |||||||||||||||||||||||||||||||||||| || | || ||||||||||| 
Sbjct: 313 cgcgcgcccgtcgccgtcaagaccgtcgccggcgtcgtcctcgccctgctcgcctccacg 372

                                                
Query: 293 ctctacagcatggccgagatcagcggccgcgccgggg 329
           |||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctctacagcatggccgagatcagcggccgcgccgggg 409



 Score =  250 bits (126), Expect = 4e-63
 Identities = 204/230 (88%)
 Strand = Plus / Plus

                                                                       
Query: 338 ggcgggggcggcgccgccctctctcccaccgaccaggtcctcttctcgcgccacctcctc 397
           ||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 430 ggcggcggcggcgcctccctctcgcccaccgaccaggtcctcttctcgcggcacctcctc 489

                                                                       
Query: 398 gaggcgtccctcatgggttactctttgtttcttgctctagatattgaccgactccaccaa 457
           ||||| ||||||||||| || || || ||||||||||||| ||||||||| |||||||||
Sbjct: 490 gaggcatccctcatggggtattccttatttcttgctctagttattgaccggctccaccaa 549

                                                                       
Query: 458 tatataagagaactacgtgggctaaagaagaatgttgaggctgtatcgaagcagaacaaa 517
           || || ||||| ||||||||||||||||||||||||||||| ||| | ||||| || |||
Sbjct: 550 tacatcagagagctacgtgggctaaagaagaatgttgaggccgtaactaagcataataaa 609

                                                             
Query: 518 atgtctgaggaaggaaaacatggaagatctcaggagatagcgaaatacca 567
           ||||  ||||||| |||||||||||||||| |||||| |  |||||||||
Sbjct: 610 atgttggaggaagcaaaacatggaagatctgaggagacaaagaaatacca 659

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>dbj|AK067188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094K24, full
           insert sequence
          Length = 1112

 Score =  303 bits (153), Expect = 3e-79
 Identities = 201/217 (92%)
 Strand = Plus / Plus

                                                                       
Query: 113 atgatccagctcctgttcgtggtgctcgtcgccgaggcggccgtggcgacggtgctgctc 172
           ||||||||||| |||||| |||||||||| || ||||||||||||||| ||||||| |||
Sbjct: 93  atgatccagctgctgttcctggtgctcgtggcggaggcggccgtggcggcggtgctcctc 152

                                                                       
Query: 173 ttcaagacgccgctgcggaagctcgccatgctgggcctcgaccgcctcaagcgcggccgc 232
           ||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||||
Sbjct: 153 ttcaagacgccgctgcggaagctcgccgtgatggggatcgaccgcctcaagcgcggccgc 212

                                                                       
Query: 233 cgggcgcccgtcgccgtcaagaccgtcgccggcgtcgtcttcacgctcctcgcctccaca 292
           || |||||||||||||||||||||||||||||||||||| || | || ||||||||||| 
Sbjct: 213 cgcgcgcccgtcgccgtcaagaccgtcgccggcgtcgtcctcgccctgctcgcctccacg 272

                                                
Query: 293 ctctacagcatggccgagatcagcggccgcgccgggg 329
           |||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctctacagcatggccgagatcagcggccgcgccgggg 309



 Score =  115 bits (58), Expect = 2e-22
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                       
Query: 338 ggcgggggcggcgccgccctctctcccaccgaccaggtcctcttctcgcgccacctcctc 397
           ||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 330 ggcggcggcggcgcctccctctcgcccaccgaccaggtcctcttctcgcggcacctcctc 389

                             
Query: 398 gaggcgtccctcatgggt 415
           ||||| ||||||||||||
Sbjct: 390 gaggcatccctcatgggt 407

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                            
Query: 110      gcgatgatccagctcctgttcgtggtgctcgtcgccgaggcggccgtggcgacggtgctg 169
                ||||||||||||||  |||||  |||||||   || ||||| ||||||||||  | ||||
Sbjct: 15227051 gcgatgatccagctgatgttcacggtgctcacggcggaggccgccgtggcgatcgcgctg 15226992

                                                                            
Query: 170      ctcttcaagacgccgctgcggaagctcgccatgctgggcctcgaccgcctcaagcgcggc 229
                || |||||||||||| |||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 15226991 ctgttcaagacgccggtgcggaagctggcgatgctcggcctcgaccgtctcaagcgcggc 15226932

                   
Query: 230      cgc 232
                |||
Sbjct: 15226931 cgc 15226929



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 362      cccaccgaccaggtcctcttctcgcgccacctcctcgaggcgtccctcatgggt 415
                |||||||||||||||||| || | ||||||||||||||||| || |||||||||
Sbjct: 15226799 cccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatgggt 15226746

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>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0015G09
          Length = 140893

 Score =  101 bits (51), Expect = 2e-18
 Identities = 105/123 (85%)
 Strand = Plus / Minus

                                                                          
Query: 110    gcgatgatccagctcctgttcgtggtgctcgtcgccgaggcggccgtggcgacggtgctg 169
              ||||||||||||||  |||||  |||||||   || ||||| ||||||||||  | ||||
Sbjct: 101565 gcgatgatccagctgatgttcacggtgctcacggcggaggccgccgtggcgatcgcgctg 101506

                                                                          
Query: 170    ctcttcaagacgccgctgcggaagctcgccatgctgggcctcgaccgcctcaagcgcggc 229
              || |||||||||||| |||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 101505 ctgttcaagacgccggtgcggaagctggcgatgctcggcctcgaccgtctcaagcgcggc 101446

                 
Query: 230    cgc 232
              |||
Sbjct: 101445 cgc 101443



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                    
Query: 362    cccaccgaccaggtcctcttctcgcgccacctcctcgaggcgtccctcatgggt 415
              |||||||||||||||||| || | ||||||||||||||||| || |||||||||
Sbjct: 101313 cccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatgggt 101260

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>gb|AY110647.1| Zea mays CL20249_1 mRNA sequence
          Length = 905

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                       
Query: 107 gcggcgatgatccagctcctgttcgtggtgctcgtcgccgaggcggccgtggcgacggtg 166
           ||||| ||||||||||| |||||||| ||||| || || |||||| || || || ||| |
Sbjct: 29  gcggcaatgatccagctgctgttcgtcgtgctggtggcggaggcgtccctgacggcggcg 88

                                                 
Query: 167 ctgctcttcaagacgccgctgcggaagctcgccatgct 204
           ||||||||||||||||||||||||||||||||| ||||
Sbjct: 89  ctgctcttcaagacgccgctgcggaagctcgccgtgct 126



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                       
Query: 377 ctcttctcgcgccacctcctcgaggcgtccctcatgggttactctttgtttcttgctcta 436
           ||||||||||| |||||||| ||||||| ||||||||| ||||| || ||||||||||||
Sbjct: 293 ctcttctcgcgtcacctcctggaggcgtgcctcatggggtactccttatttcttgctcta 352

                                           
Query: 437 gatattgaccgactccaccaatatataagaga 468
           |  |||||||| ||||||||||| || |||||
Sbjct: 353 gtgattgaccggctccaccaatacatcagaga 384

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>dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E03, full
           insert sequence
          Length = 1070

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                       
Query: 146 gaggcggccgtggcgacggtgctgctcttcaagacgccgctgcggaagctcgccatgctg 205
           ||||| ||||||||||  | |||||| |||||||||||| |||||||||| || ||||| 
Sbjct: 16  gaggccgccgtggcgatcgcgctgctgttcaagacgccggtgcggaagctggcgatgctc 75

                                      
Query: 206 ggcctcgaccgcctcaagcgcggccgc 232
           ||||||||||| |||||||||||||||
Sbjct: 76  ggcctcgaccgtctcaagcgcggccgc 102



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 100/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 362 cccaccgaccaggtcctcttctcgcgccacctcctcgaggcgtccctcatgggttactct 421
           |||||||||||||||||| || | ||||||||||||||||| || |||||||| ||||| 
Sbjct: 232 cccaccgaccaggtcctcctcgcccgccacctcctcgaggcctcgctcatgggatactcc 291

                                                                      
Query: 422 ttgtttcttgctctagatattgaccgactccaccaatatataagagaactacgtgggct 480
           || || |||||||| |  |||||||| |||||  | ||||| |||||| |||| |||||
Sbjct: 292 ttattccttgctctggtcattgaccggctccataactatatcagagaagtacgagggct 350

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>gb|AY105569.1| Zea mays PCO107462 mRNA sequence
          Length = 1024

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                       
Query: 152 gccgtggcgacggtgctgctcttcaagacgccgctgcggaagctcgccatgctgggcctc 211
           ||||||||| ||||||| |||||||||||||||||||||| ||| ||| |||| |  |||
Sbjct: 229 gccgtggcggcggtgctactcttcaagacgccgctgcggaggctggccgtgctcgcgctc 288

                                
Query: 212 gaccgcctcaagcgcggccgc 232
           |||| ||||||||| ||||||
Sbjct: 289 gaccacctcaagcggggccgc 309



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 362 cccaccgaccaggtcctcttctcgcgccacctcctcgaggcgtccctcatgggttactct 421
           |||||||||||||||||  |  |||| ||||||||||||||||| |||||||| ||||| 
Sbjct: 439 cccaccgaccaggtccttcttgcgcgacacctcctcgaggcgtcactcatgggatactcc 498

                                     
Query: 422 ttgtttcttgctctagatattgaccg 447
           || || |||||| |||  ||||||||
Sbjct: 499 ttattccttgctttagtcattgaccg 524

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>dbj|AK107093.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H04, full
           insert sequence
          Length = 1130

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 362 cccaccgaccaggtcctcttctcgcgccacctcctcgaggcgtccctcatgggttactct 421
           |||||||||||||| |||  |   ||||||||||||||||| ||||||||||| ||||||
Sbjct: 579 cccaccgaccaggtgctcgccagccgccacctcctcgaggcatccctcatgggatactct 638

                     
Query: 422 ttgtttcttg 431
            |||||||||
Sbjct: 639 ctgtttcttg 648

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>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBb0061M13, complete sequence
          Length = 174910

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                    
Query: 362    cccaccgaccaggtcctcttctcgcgccacctcctcgaggcgtccctcatgggt 415
              |||||||||||||| |||  |   ||||||||||||||||| ||||||||||||
Sbjct: 120689 cccaccgaccaggtgctcgccagccgccacctcctcgaggcatccctcatgggt 120636

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 362      cccaccgaccaggtcctcttctcgcgccacctcctcgaggcgtccctcatgggt 415
                |||||||||||||| |||  |   ||||||||||||||||| ||||||||||||
Sbjct: 10951485 cccaccgaccaggtgctcgccagccgccacctcctcgaggcatccctcatgggt 10951432

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>ref|XM_367503.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
            (MG07414.4) partial mRNA
          Length = 2712

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 336  agggcgggggcggcgccgccctc 358
            |||||||||||||||||||||||
Sbjct: 1997 agggcgggggcggcgccgccctc 2019

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>ref|XM_963865.1| PREDICTED: Tribolium castaneum similar to CG9369-PA (LOC657403), mRNA
          Length = 1659

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 208  cctcgaccgcctcaagcgcggccgccg 234
            ||||||||||||||||||| |||||||
Sbjct: 1191 cctcgaccgcctcaagcgccgccgccg 1217

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>gb|AC138367.14| Mus musculus chromosome 8, clone RP23-296G24, complete sequence
          Length = 177856

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 525   aggaaggaaaacatggaagat 545
             |||||||||||||||||||||
Sbjct: 87858 aggaaggaaaacatggaagat 87838

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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 136     gctcgtcgccgaggcggccgt 156
               |||||||||||||||||||||
Sbjct: 2354612 gctcgtcgccgaggcggccgt 2354632

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>gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, complete sequence
          Length = 233720

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   cggccgtggcgacggtgctgc 170
             |||||||||||||||||||||
Sbjct: 33030 cggccgtggcgacggtgctgc 33010

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>gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, complete sequence
          Length = 178714

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 512   aacaaaatgtctgaggaagga 532
             |||||||||||||||||||||
Sbjct: 48322 aacaaaatgtctgaggaagga 48302

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>emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30
          Length = 233755

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   cggccgtggcgacggtgctgc 170
             |||||||||||||||||||||
Sbjct: 86787 cggccgtggcgacggtgctgc 86807

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 136    gctcgtcgccgaggcggccgt 156
              |||||||||||||||||||||
Sbjct: 516024 gctcgtcgccgaggcggccgt 516044

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>gb|AY040383.1| Castanopsis fargesii isolate 1455 internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence
          Length = 600

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 129 tcgtggtgctcgtcgccgagg 149
           |||||||||||||||||||||
Sbjct: 499 tcgtggtgctcgtcgccgagg 479

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 136     gctcgtcgccgaggcggccgt 156
               |||||||||||||||||||||
Sbjct: 1962272 gctcgtcgccgaggcggccgt 1962252

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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 130    cgtggtgctcgtcgccgaggc 150
              |||||||||||||||||||||
Sbjct: 212505 cgtggtgctcgtcgccgaggc 212485

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>emb|AJ133724.1|MAU133724 Mycobacterium aurum GGPP synthase, crtI, crtB, crtYc, crtYd, crtT,
            crtU and crtV genes
          Length = 7444

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 96   acggcacgccggcggcgatga 116
            |||||||||||||||||||||
Sbjct: 5143 acggcacgccggcggcgatga 5163

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>dbj|AP003969.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-755E23, complete
             sequence
          Length = 163000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 514   caaaatgtctgaggaaggaaa 534
             |||||||||||||||||||||
Sbjct: 40403 caaaatgtctgaggaaggaaa 40423

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>emb|AL732296.11| Mouse DNA sequence from clone RP23-131P6 on chromosome 2, complete
             sequence
          Length = 203503

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 524   gaggaaggaaaacatggaaga 544
             |||||||||||||||||||||
Sbjct: 52104 gaggaaggaaaacatggaaga 52124

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>ref|XM_477796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 450

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 gccgaggcggccgtggcgac 162
           ||||||||||||||||||||
Sbjct: 205 gccgaggcggccgtggcgac 224

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>ref|XM_418650.1| PREDICTED: Gallus gallus similar to lanosterol 14-demethylase
           (LOC420548), mRNA
          Length = 2318

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 cactctacagcatggccgag 310
           ||||||||||||||||||||
Sbjct: 165 cactctacagcatggccgag 184

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>ref|XM_824064.1| Trypanosoma brucei TREU927 delta tubulin (Tb11.01.2695) partial
           mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 46  cctcctcctcgacctccatc 65
           ||||||||||||||||||||
Sbjct: 747 cctcctcctcgacctccatc 766

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>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10,
             complete sequence
          Length = 121560

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   gtgggctaaagaagaatgtt 493
             ||||||||||||||||||||
Sbjct: 40609 gtgggctaaagaagaatgtt 40590

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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 210     tcgaccgcctcaagcgcggc 229
               ||||||||||||||||||||
Sbjct: 4020570 tcgaccgcctcaagcgcggc 4020589

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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 143   gccgaggcggccgtggcgacggtgctgc 170
             |||||||||| | |||||||||||||||
Sbjct: 83381 gccgaggcggacatggcgacggtgctgc 83354

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>emb|AJ630366.1| Canis familiaris MHC class II region on chromosome CFA12, partial
             sequence, BAC clone 21p19, containing partial col11a2
             gene, RXRB, SLC39A7, HSD17B8, RING1, VPS52, RPS18 and
             B3GALT4 genes, C12H6orf11 ORF, KE2, RAB2L, TAPBP, ZNF297
             and DAXX genes
          Length = 143626

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    ccccagaacagactccctaattcc 47
             ||||||||||||||||||| ||||
Sbjct: 17550 ccccagaacagactccctagttcc 17573

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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 332     cctgagggcgggggcggcgc 351
               ||||||||||||||||||||
Sbjct: 1725327 cctgagggcgggggcggcgc 1725308

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>gb|AE006016.1| Caulobacter crescentus CB15 section 342 of 359 of the complete genome
          Length = 10963

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 139  cgtcgccgaggcggccgtgg 158
            ||||||||||||||||||||
Sbjct: 9556 cgtcgccgaggcggccgtgg 9575

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>gb|AC087240.17| Homo sapiens 12p BAC RP11-752F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 198068

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   ctgaggaaggaaaacatgga 541
             ||||||||||||||||||||
Sbjct: 44797 ctgaggaaggaaaacatgga 44816

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>gb|AC092811.2| Homo sapiens chromosome 1 clone RP11-496N12, complete sequence
          Length = 192618

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 313    cagcggccgcgccggggaccctgagggcgggg 344
              ||||||||| ||||||||||||| | ||||||
Sbjct: 103750 cagcggccgggccggggaccctgggcgcgggg 103781

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 132     tggtgctcgtcgccgaggcg 151
               ||||||||||||||||||||
Sbjct: 4583779 tggtgctcgtcgccgaggcg 4583760

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>dbj|AB200353.1| Sphingomonas sp. 14DN-61 phnI, phnJ, phnK, phnN genes for
            acetaldehyde dehydrogenase, 4-hydroxy-2-oxovalerate
            aldolase, 4-oxolocrotonate decarboxylase, aldehyde
            dehydrogenase, complete cds
          Length = 6921

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 207  gcctcgaccgcctcaagcgcggccgccg 234
            |||||||||||| | |||||||||||||
Sbjct: 2321 gcctcgaccgccgccagcgcggccgccg 2294

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 44       ttcctcctcctcgacctcca 63
                ||||||||||||||||||||
Sbjct: 22370636 ttcctcctcctcgacctcca 22370617

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 143      gccgaggcggccgtggcgac 162
                ||||||||||||||||||||
Sbjct: 14480000 gccgaggcggccgtggcgac 14480019

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>gb|AF216742.3|AF216742 Trypanosoma brucei delta tubulin gene, complete cds
          Length = 1467

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 46  cctcctcctcgacctccatc 65
           ||||||||||||||||||||
Sbjct: 744 cctcctcctcgacctccatc 763

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 245     gccgtcaagaccgtcgccggcgtcgtct 272
               ||||||| |||||||| |||||||||||
Sbjct: 6791105 gccgtcatgaccgtcgtcggcgtcgtct 6791078

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>gb|AC094011.2| Gallus gallus clone WAG-50C6, complete sequence
          Length = 118914

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   cactctacagcatggccgag 310
             ||||||||||||||||||||
Sbjct: 33834 cactctacagcatggccgag 33815

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>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0673E01
          Length = 125909

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    gccgaggcggccgtggcgac 162
              ||||||||||||||||||||
Sbjct: 100331 gccgaggcggccgtggcgac 100350

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>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1155_H10
          Length = 140475

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     ttcctcctcctcgacctcca 63
              ||||||||||||||||||||
Sbjct: 132644 ttcctcctcctcgacctcca 132625

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>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1003_C09
          Length = 124746

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 44   ttcctcctcctcgacctcca 63
            ||||||||||||||||||||
Sbjct: 7125 ttcctcctcctcgacctcca 7106

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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 459     atataagagaactacgtggg 478
               ||||||||||||||||||||
Sbjct: 2259366 atataagagaactacgtggg 2259385

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    gctcgccatgctgggcctcg 212
              ||||||||||||||||||||
Sbjct: 434713 gctcgccatgctgggcctcg 434732

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     agaccgtcgccggcgtcgtc 271
               ||||||||||||||||||||
Sbjct: 4478960 agaccgtcgccggcgtcgtc 4478941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,356,662
Number of Sequences: 3902068
Number of extensions: 5356662
Number of successful extensions: 116887
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114977
Number of HSP's gapped (non-prelim): 1910
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result