ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor (Po... 43 2e-04
2PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor (Po... 32 0.56
3PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor (Po... 32 0.56
4PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor (Po... 32 0.56

>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (Floral organ
           regulator 1)
          Length = 332

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +1

Query: 187 RCPQADRQALLRVKQALGNPATL 255
           RCP +D+QAL+RVKQ+LGNPATL
Sbjct: 26  RCPPSDKQALMRVKQSLGNPATL 48



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>PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP-3)
          Length = 342

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 190 CPQADRQALLRVKQALGNPATL 255
           C   D+QALL++K+ LGNP TL
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTL 53



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>PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 342

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 190 CPQADRQALLRVKQALGNPATL 255
           C   D+QALL++K+ LGNP TL
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTL 53



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>PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-1)
          Length = 342

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 190 CPQADRQALLRVKQALGNPATL 255
           C   D+QALL++K+ LGNP TL
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTL 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.119    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,262,192
Number of Sequences: 219361
Number of extensions: 130735
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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