Clone Name | bart56g07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_417611.1| PREDICTED: Gallus gallus similar to dJ734G22.1.1 (novel protein (FLJ20321) (isoform 1)) (LOC419452), mRNA Length = 4770 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 95 cccaaagccctctttccttcct 116 |||||||||||||||||||||| Sbjct: 1753 cccaaagccctctttccttcct 1732
>gb|AC104675.3| Sus scrofa clone RP44-122H18, complete sequence Length = 176345 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 400 gaggccggggatataacctgca 421 |||||||||||||||||||||| Sbjct: 47578 gaggccggggatataacctgca 47557
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 420 caggtgggccccgcgcgtcagcggcccagg 449 |||||||||||||| |||||||||| |||| Sbjct: 27179754 caggtgggccccgcacgtcagcggcacagg 27179783
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 420 caggtgggccccgcgcgtcagcggcccagg 449 |||||||||||||| |||||||||| |||| Sbjct: 27105354 caggtgggccccgcacgtcagcggcacagg 27105383
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 420 caggtgggccccgcgcgtcagcggcccagg 449 |||||||||||||| |||||||||| |||| Sbjct: 118653 caggtgggccccgcacgtcagcggcacagg 118682
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 420 caggtgggccccgcgcgtcagcggc 444 |||||||||||||| |||||||||| Sbjct: 61528 caggtgggccccgcacgtcagcggc 61552
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07 map near 50283S, complete sequence Length = 158158 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 atccccatggccaaaacccatcccc 97 |||||||||||||||||| |||||| Sbjct: 25625 atccccatggccaaaaccaatcccc 25601
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 catggccgagacagccgccgc 70 ||||||||||||||||||||| Sbjct: 2555675 catggccgagacagccgccgc 2555655
>gb|AY271660.1| Actinomadura madurae maduropeptin biosynthesis gene cluster, partial sequence Length = 11426 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 cggtgccggtgcccgagccct 365 ||||||||||||||||||||| Sbjct: 5361 cggtgccggtgcccgagccct 5341
>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0015J03, complete sequence Length = 135940 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 420 caggtgggccccgcgcgtcagcggc 444 |||||||||||||| |||||||||| Sbjct: 90749 caggtgggccccgcacgtcagcggc 90773
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 atccccatggccaaaacccatcccc 97 |||||||||||||||||| |||||| Sbjct: 14280013 atccccatggccaaaaccaatcccc 14279989 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 420 caggtgggccccgcgcgtcagcggc 444 |||||||||||||| |||||||||| Sbjct: 12894192 caggtgggccccgcacgtcagcggc 12894216
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 420 caggtgggccccgcgcgtcagcggc 444 |||||||||||||| |||||||||| Sbjct: 4201711 caggtgggccccgcacgtcagcggc 4201687 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 gtgggccccgcgcgtcagcg 442 |||||||||||||||||||| Sbjct: 19249020 gtgggccccgcgcgtcagcg 19249001
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 420 caggtgggccccgcgcgtcagcggc 444 |||||||||||||| |||||||||| Sbjct: 4202532 caggtgggccccgcacgtcagcggc 4202508 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 gtgggccccgcgcgtcagcg 442 |||||||||||||||||||| Sbjct: 19260296 gtgggccccgcgcgtcagcg 19260277
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 atccccatggccaaaacccatcccc 97 |||||||||||||||||| |||||| Sbjct: 14362015 atccccatggccaaaaccaatcccc 14361991 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 420 caggtgggccccgcgcgtcagcggc 444 |||||||||||||| |||||||||| Sbjct: 12974399 caggtgggccccgcacgtcagcggc 12974423
>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete sequence Length = 228428 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 atccccaaagccctctttcct 112 ||||||||||||||||||||| Sbjct: 12102 atccccaaagccctctttcct 12082
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tcgatggcctcggcgtggtg 247 |||||||||||||||||||| Sbjct: 1102583 tcgatggcctcggcgtggtg 1102564
>gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, complete sequence Length = 163721 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ggaggatgaaggtgactaga 401 |||||||||||||||||||| Sbjct: 87429 ggaggatgaaggtgactaga 87410
>gb|DQ215103.1| Taeniopygia guttata clone 0058P0011F05 mRNA sequence Length = 1038 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 gccgcctccgccctcctttcctcc 174 ||||||||| |||||||||||||| Sbjct: 164 gccgcctcctccctcctttcctcc 187
>gb|AY360388.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0038J12, complete sequence Length = 131944 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 aggtgggccccgcgcgtcagcggc 444 ||||||||||||| |||||||||| Sbjct: 15678 aggtgggccccgcacgtcagcggc 15701
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence Length = 1608198 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gagacagccgccgccgatcc 76 |||||||||||||||||||| Sbjct: 1258495 gagacagccgccgccgatcc 1258514
>gb|AC116668.6| Trypanosoma brucei chromosome 5 clone RPCI93-45E22, complete sequence Length = 141628 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gagacagccgccgccgatcc 76 |||||||||||||||||||| Sbjct: 73612 gagacagccgccgccgatcc 73631
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 gctaacccgttgactggcat 479 |||||||||||||||||||| Sbjct: 646442 gctaacccgttgactggcat 646423
>gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome 14, complete sequence Length = 201412 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ccttccctgtcctttgtcag 382 |||||||||||||||||||| Sbjct: 132627 ccttccctgtcctttgtcag 132646
>ref|XM_821425.1| Trypanosoma brucei TREU927 clone RPCI93-45E22 hypothetical protein (Tb927.5.4110) partial mRNA Length = 2586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gagacagccgccgccgatcc 76 |||||||||||||||||||| Sbjct: 2137 gagacagccgccgccgatcc 2118
>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence Length = 199240 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ggaggatgaaggtgactaga 401 |||||||||||||||||||| Sbjct: 26202 ggaggatgaaggtgactaga 26221
>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence Length = 215356 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ggaggatgaaggtgactaga 401 |||||||||||||||||||| Sbjct: 104865 ggaggatgaaggtgactaga 104846
>gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1, complete sequence Length = 195052 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tgtcaggaggatgaaggtga 396 |||||||||||||||||||| Sbjct: 94086 tgtcaggaggatgaaggtga 94105
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gtgggccccgcgcgtcagcg 442 |||||||||||||||||||| Sbjct: 127361 gtgggccccgcgcgtcagcg 127380
>gb|AF325922.1|AF325922 Takifugu rubripes omega class glutathione-S-transferase, PTEN, 3'-phosphoadenosine 5'-phosphosulfate synthase 2, multiple inositol polyphosphate phosphatase 1, and hypothetical protein genes, complete cds; and multiple inositol polyphosphate phosphatase 2 gene, partial cds Length = 55902 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 aacccatccccaaagccctctttc 110 ||||||||||| |||||||||||| Sbjct: 28562 aacccatcccccaagccctctttc 28539
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 cctgcaggtgggccccgcgc 435 |||||||||||||||||||| Sbjct: 1651372 cctgcaggtgggccccgcgc 1651353
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 aggtgggccccgcgcgtcagcggc 444 ||||||||||||| |||||||||| Sbjct: 13032602 aggtgggccccgcacgtcagcggc 13032579
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gtgggccccgcgcgtcagcg 442 |||||||||||||||||||| Sbjct: 19228045 gtgggccccgcgcgtcagcg 19228064
>gb|AC093377.4| Homo sapiens BAC clone RP11-224E23 from 2, complete sequence Length = 61056 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 ggcccaggcgctgacttggc 461 |||||||||||||||||||| Sbjct: 41080 ggcccaggcgctgacttggc 41061
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gtgggccccgcgcgtcagcg 442 |||||||||||||||||||| Sbjct: 151440 gtgggccccgcgcgtcagcg 151459
>dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1052H09 Length = 190806 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 aggtgggccccgcgcgtcagcggc 444 ||||||||||||| |||||||||| Sbjct: 169582 aggtgggccccgcacgtcagcggc 169559
>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone: B1100F03 Length = 139217 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 aggtgggccccgcgcgtcagcggc 444 ||||||||||||| |||||||||| Sbjct: 13122 aggtgggccccgcacgtcagcggc 13099
>dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1163_G04 Length = 106253 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gtgggccccgcgcgtcagcg 442 |||||||||||||||||||| Sbjct: 4271 gtgggccccgcgcgtcagcg 4290 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,044,936 Number of Sequences: 3902068 Number of extensions: 4044936 Number of successful extensions: 85236 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84555 Number of HSP's gapped (non-prelim): 681 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)