ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_417611.1| PREDICTED: Gallus gallus similar to dJ734G22.1.... 44 0.47
2gb|AC104675.3| Sus scrofa clone RP44-122H18, complete sequence 44 0.47
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
5emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559... 44 0.47
6gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
7gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
8gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.9
9gb|AY271660.1| Actinomadura madurae maduropeptin biosynthesis ge... 42 1.9
10gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
15emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on ch... 42 1.9
16gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.4
17gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, comp... 40 7.4
18gb|DQ215103.1| Taeniopygia guttata clone 0058P0011F05 mRNA sequence 40 7.4
19gb|AY360388.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
20gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 7.4
21gb|AC116668.6| Trypanosoma brucei chromosome 5 clone RPCI93-45E2... 40 7.4
22gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 7.4
23gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome... 40 7.4
24ref|XM_821425.1| Trypanosoma brucei TREU927 clone RPCI93-45E22 h... 40 7.4
25gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, co... 40 7.4
26gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, co... 40 7.4
27gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-... 40 7.4
28gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 40 7.4
29gb|AF325922.1|AF325922 Takifugu rubripes omega class glutathione... 40 7.4
30gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 7.4
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
33gb|AC093377.4| Homo sapiens BAC clone RP11-224E23 from 2, comple... 40 7.4
34dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
35dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
36dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
37dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4

>ref|XM_417611.1| PREDICTED: Gallus gallus similar to dJ734G22.1.1 (novel protein
            (FLJ20321) (isoform 1)) (LOC419452), mRNA
          Length = 4770

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 95   cccaaagccctctttccttcct 116
            ||||||||||||||||||||||
Sbjct: 1753 cccaaagccctctttccttcct 1732



to top

>gb|AC104675.3| Sus scrofa clone RP44-122H18, complete sequence
          Length = 176345

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 400   gaggccggggatataacctgca 421
             ||||||||||||||||||||||
Sbjct: 47578 gaggccggggatataacctgca 47557



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 420      caggtgggccccgcgcgtcagcggcccagg 449
                |||||||||||||| |||||||||| ||||
Sbjct: 27179754 caggtgggccccgcacgtcagcggcacagg 27179783



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 420      caggtgggccccgcgcgtcagcggcccagg 449
                |||||||||||||| |||||||||| ||||
Sbjct: 27105354 caggtgggccccgcacgtcagcggcacagg 27105383



to top

>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145816

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 420    caggtgggccccgcgcgtcagcggcccagg 449
              |||||||||||||| |||||||||| ||||
Sbjct: 118653 caggtgggccccgcacgtcagcggcacagg 118682



to top

>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0013C12 map near S6115, complete sequence
          Length = 123718

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 420   caggtgggccccgcgcgtcagcggc 444
             |||||||||||||| ||||||||||
Sbjct: 61528 caggtgggccccgcacgtcagcggc 61552



to top

>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0039A07 map near 50283S, complete sequence
          Length = 158158

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 73    atccccatggccaaaacccatcccc 97
             |||||||||||||||||| ||||||
Sbjct: 25625 atccccatggccaaaaccaatcccc 25601



to top

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 50      catggccgagacagccgccgc 70
               |||||||||||||||||||||
Sbjct: 2555675 catggccgagacagccgccgc 2555655



to top

>gb|AY271660.1| Actinomadura madurae maduropeptin biosynthesis gene cluster, partial
            sequence
          Length = 11426

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 345  cggtgccggtgcccgagccct 365
            |||||||||||||||||||||
Sbjct: 5361 cggtgccggtgcccgagccct 5341



to top

>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0015J03, complete sequence
          Length = 135940

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 420   caggtgggccccgcgcgtcagcggc 444
             |||||||||||||| ||||||||||
Sbjct: 90749 caggtgggccccgcacgtcagcggc 90773



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 73       atccccatggccaaaacccatcccc 97
                |||||||||||||||||| ||||||
Sbjct: 14280013 atccccatggccaaaaccaatcccc 14279989



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 420      caggtgggccccgcgcgtcagcggc 444
                |||||||||||||| ||||||||||
Sbjct: 12894192 caggtgggccccgcacgtcagcggc 12894216



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 420     caggtgggccccgcgcgtcagcggc 444
               |||||||||||||| ||||||||||
Sbjct: 4201711 caggtgggccccgcacgtcagcggc 4201687



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 423      gtgggccccgcgcgtcagcg 442
                ||||||||||||||||||||
Sbjct: 19249020 gtgggccccgcgcgtcagcg 19249001



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 420     caggtgggccccgcgcgtcagcggc 444
               |||||||||||||| ||||||||||
Sbjct: 4202532 caggtgggccccgcacgtcagcggc 4202508



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 423      gtgggccccgcgcgtcagcg 442
                ||||||||||||||||||||
Sbjct: 19260296 gtgggccccgcgcgtcagcg 19260277



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 73       atccccatggccaaaacccatcccc 97
                |||||||||||||||||| ||||||
Sbjct: 14362015 atccccatggccaaaaccaatcccc 14361991



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 420      caggtgggccccgcgcgtcagcggc 444
                |||||||||||||| ||||||||||
Sbjct: 12974399 caggtgggccccgcacgtcagcggc 12974423



to top

>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete
             sequence
          Length = 228428

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    atccccaaagccctctttcct 112
             |||||||||||||||||||||
Sbjct: 12102 atccccaaagccctctttcct 12082



to top

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     tcgatggcctcggcgtggtg 247
               ||||||||||||||||||||
Sbjct: 1102583 tcgatggcctcggcgtggtg 1102564



to top

>gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, complete sequence
          Length = 163721

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   ggaggatgaaggtgactaga 401
             ||||||||||||||||||||
Sbjct: 87429 ggaggatgaaggtgactaga 87410



to top

>gb|DQ215103.1| Taeniopygia guttata clone 0058P0011F05 mRNA sequence
          Length = 1038

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 151 gccgcctccgccctcctttcctcc 174
           ||||||||| ||||||||||||||
Sbjct: 164 gccgcctcctccctcctttcctcc 187



to top

>gb|AY360388.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0038J12,
             complete sequence
          Length = 131944

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 421   aggtgggccccgcgcgtcagcggc 444
             ||||||||||||| ||||||||||
Sbjct: 15678 aggtgggccccgcacgtcagcggc 15701



to top

>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      gagacagccgccgccgatcc 76
               ||||||||||||||||||||
Sbjct: 1258495 gagacagccgccgccgatcc 1258514



to top

>gb|AC116668.6| Trypanosoma brucei chromosome 5 clone RPCI93-45E22, complete sequence
          Length = 141628

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gagacagccgccgccgatcc 76
             ||||||||||||||||||||
Sbjct: 73612 gagacagccgccgccgatcc 73631



to top

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 460    gctaacccgttgactggcat 479
              ||||||||||||||||||||
Sbjct: 646442 gctaacccgttgactggcat 646423



to top

>gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome 14, complete sequence
          Length = 201412

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    ccttccctgtcctttgtcag 382
              ||||||||||||||||||||
Sbjct: 132627 ccttccctgtcctttgtcag 132646



to top

>ref|XM_821425.1| Trypanosoma brucei TREU927 clone RPCI93-45E22 hypothetical protein
            (Tb927.5.4110) partial mRNA
          Length = 2586

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   gagacagccgccgccgatcc 76
            ||||||||||||||||||||
Sbjct: 2137 gagacagccgccgccgatcc 2118



to top

>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   ggaggatgaaggtgactaga 401
             ||||||||||||||||||||
Sbjct: 26202 ggaggatgaaggtgactaga 26221



to top

>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence
          Length = 215356

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    ggaggatgaaggtgactaga 401
              ||||||||||||||||||||
Sbjct: 104865 ggaggatgaaggtgactaga 104846



to top

>gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1, complete
             sequence
          Length = 195052

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   tgtcaggaggatgaaggtga 396
             ||||||||||||||||||||
Sbjct: 94086 tgtcaggaggatgaaggtga 94105



to top

>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
              sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    gtgggccccgcgcgtcagcg 442
              ||||||||||||||||||||
Sbjct: 127361 gtgggccccgcgcgtcagcg 127380



to top

>gb|AF325922.1|AF325922 Takifugu rubripes omega class glutathione-S-transferase, PTEN,
             3'-phosphoadenosine 5'-phosphosulfate synthase 2, multiple
             inositol polyphosphate phosphatase 1, and hypothetical
             protein genes, complete cds; and multiple inositol
             polyphosphate phosphatase 2 gene, partial cds
          Length = 55902

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    aacccatccccaaagccctctttc 110
             ||||||||||| ||||||||||||
Sbjct: 28562 aacccatcccccaagccctctttc 28539



to top

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 416     cctgcaggtgggccccgcgc 435
               ||||||||||||||||||||
Sbjct: 1651372 cctgcaggtgggccccgcgc 1651353



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 421      aggtgggccccgcgcgtcagcggc 444
                ||||||||||||| ||||||||||
Sbjct: 13032602 aggtgggccccgcacgtcagcggc 13032579



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 423      gtgggccccgcgcgtcagcg 442
                ||||||||||||||||||||
Sbjct: 19228045 gtgggccccgcgcgtcagcg 19228064



to top

>gb|AC093377.4| Homo sapiens BAC clone RP11-224E23 from 2, complete sequence
          Length = 61056

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   ggcccaggcgctgacttggc 461
             ||||||||||||||||||||
Sbjct: 41080 ggcccaggcgctgacttggc 41061



to top

>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0062D12
          Length = 155408

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    gtgggccccgcgcgtcagcg 442
              ||||||||||||||||||||
Sbjct: 151440 gtgggccccgcgcgtcagcg 151459



to top

>dbj|AP006480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone: B1052H09
          Length = 190806

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 421    aggtgggccccgcgcgtcagcggc 444
              ||||||||||||| ||||||||||
Sbjct: 169582 aggtgggccccgcacgtcagcggc 169559



to top

>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone: B1100F03
          Length = 139217

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 421   aggtgggccccgcgcgtcagcggc 444
             ||||||||||||| ||||||||||
Sbjct: 13122 aggtgggccccgcacgtcagcggc 13099



to top

>dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1163_G04
          Length = 106253

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  gtgggccccgcgcgtcagcg 442
            ||||||||||||||||||||
Sbjct: 4271 gtgggccccgcgcgtcagcg 4290


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,044,936
Number of Sequences: 3902068
Number of extensions: 4044936
Number of successful extensions: 85236
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84555
Number of HSP's gapped (non-prelim): 681
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top