ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart56e02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004M14, full insert sequence Length = 1960 Score = 180 bits (91), Expect = 3e-42 Identities = 163/187 (87%) Strand = Plus / Plus Query: 375 gccgctcaagatcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgat 434 |||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || Sbjct: 351 gccgctcaaggtcggcgtcgtgctctccggcggtcaggcgcccggcggccacaatgtcat 410 Query: 435 ctgcggcatctttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaa 494 |||||||||||| |||||||||||||| ||| ||||| | ||||||||||||||| Sbjct: 411 ctgcggcatcttcgattacctgcaggaatatgcaaaaggatccgtcatgtatggattcaa 470 Query: 495 gggaggcccagctggtgtcatgaagggcaagtacgtcgagctgactgctgatttcgtgta 554 |||||| |||||||| ||||||||| |||||||||| ||||| ||||| |||| ||||| Sbjct: 471 gggaggtccagctggagtcatgaagtgcaagtacgttgagctcactgcggattatgtgta 530 Query: 555 cccctac 561 ||||||| Sbjct: 531 cccctac 537 Score = 149 bits (75), Expect = 1e-32 Identities = 144/167 (86%) Strand = Plus / Plus Query: 169 ctcgcgtccgtgtacagcgaggtgcagacgagccgcatcgcgcacatgctgcccctcccc 228 |||||||| || ||||||||||||||||| |||||| || |||| ||| ||||||||| Sbjct: 145 ctcgcgtcggtctacagcgaggtgcagaccagccgcctcaagcacgcgctccccctcccc 204 Query: 229 tccgtcctccgctcccacttcaccctcgccgacgggcccgccagcaccgcagcggggagc 288 |||||||||||||||| |||| ||||||||||||| ||||||||| |||| || || | | Sbjct: 205 tccgtcctccgctcccccttcgccctcgccgacggccccgccagctccgccgccggcaac 264 Query: 289 cccgatgagatcgccaagctgttcccctgcctctacggccagccgtc 335 |||| ||||||||| |||||||||||| ||| | |||||||||||| Sbjct: 265 cccggtgagatcgcgaagctgttccccaacctgttcggccagccgtc 311
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 169 ctcgcgtccgtgtacagcgaggtgcagacgagccgcatcgcgcacatgctgcccctcccc 228 |||||||| || ||||||||||||||||| |||||| || |||| ||| ||||||||| Sbjct: 7664984 ctcgcgtcggtctacagcgaggtgcagaccagccgcctcaagcacgcgctccccctcccc 7664925 Query: 229 tccgtcctccgctcccacttcaccctcgccgacgggcccgccagcaccgc 278 |||||||||||||||| |||| ||||||||||||| ||||||||| |||| Sbjct: 7664924 tccgtcctccgctcccccttcgccctcgccgacggccccgccagctccgc 7664875 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Minus Query: 480 catgtatggattcaagggaggcccagctggtgtcatgaagggcaagtacgtcgagctgac 539 ||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| || Sbjct: 7664195 catgtatggattcaagggaggtccagctggagtcatgaagtgcaagtacgttgagctcac 7664136 Query: 540 tgctgatttcgtgtacccctac 561 ||| |||| |||||||||||| Sbjct: 7664135 tgcggattatgtgtacccctac 7664114 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 375 gccgctcaagatcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgat 434 |||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || Sbjct: 7664666 gccgctcaaggtcggcgtcgtgctctccggcggtcaggcgcccggcggccacaatgtcat 7664607 Query: 435 ctgcggcatctt 446 |||||||||||| Sbjct: 7664606 ctgcggcatctt 7664595 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Minus Query: 294 tgagatcgccaagctgttcccctgcctctacggccagccgtc 335 ||||||||| |||||||||||| ||| | |||||||||||| Sbjct: 7664747 tgagatcgcgaagctgttccccaacctgttcggccagccgtc 7664706
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_C11 Length = 124827 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 169 ctcgcgtccgtgtacagcgaggtgcagacgagccgcatcgcgcacatgctgcccctcccc 228 |||||||| || ||||||||||||||||| |||||| || |||| ||| ||||||||| Sbjct: 88239 ctcgcgtcggtctacagcgaggtgcagaccagccgcctcaagcacgcgctccccctcccc 88180 Query: 229 tccgtcctccgctcccacttcaccctcgccgacgggcccgccagcaccgc 278 |||||||||||||||| |||| ||||||||||||| ||||||||| |||| Sbjct: 88179 tccgtcctccgctcccccttcgccctcgccgacggccccgccagctccgc 88130 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Minus Query: 480 catgtatggattcaagggaggcccagctggtgtcatgaagggcaagtacgtcgagctgac 539 ||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| || Sbjct: 87450 catgtatggattcaagggaggtccagctggagtcatgaagtgcaagtacgttgagctcac 87391 Query: 540 tgctgatttcgtgtacccctac 561 ||| |||| |||||||||||| Sbjct: 87390 tgcggattatgtgtacccctac 87369 Score = 95.6 bits (48), Expect = 1e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 375 gccgctcaagatcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgat 434 |||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || Sbjct: 87921 gccgctcaaggtcggcgtcgtgctctccggcggtcaggcgcccggcggccacaatgtcat 87862 Query: 435 ctgcggcatctt 446 |||||||||||| Sbjct: 87861 ctgcggcatctt 87850 Score = 44.1 bits (22), Expect = 0.49 Identities = 37/42 (88%) Strand = Plus / Minus Query: 294 tgagatcgccaagctgttcccctgcctctacggccagccgtc 335 ||||||||| |||||||||||| ||| | |||||||||||| Sbjct: 88002 tgagatcgcgaagctgttccccaacctgttcggccagccgtc 87961
>ref|NM_101072.3| Arabidopsis thaliana 6-phosphofructokinase AT1G12000 mRNA, complete cds Length = 2072 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 445 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 504 |||||||||||||| |||||||| ||||| ||||| | || || |||||||| || ||| Sbjct: 460 tttgattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtcca 519 Query: 505 gctggtgtcatgaa 518 |||||| ||||||| Sbjct: 520 gctggtatcatgaa 533
>gb|AY093260.1| Arabidopsis thaliana similar to pyrophosphate-dependent phosphofuctokinase beta subunit (At1g12000) mRNA, complete cds Length = 1733 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 445 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 504 |||||||||||||| |||||||| ||||| ||||| | || || |||||||| || ||| Sbjct: 352 tttgattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtcca 411 Query: 505 gctggtgtcatgaa 518 |||||| ||||||| Sbjct: 412 gctggtatcatgaa 425
>gb|AY062473.1| Arabidopsis thaliana Similar to pyrophosphate-dependent phosphofuctokinase beta subunit (At1g12000; F12F1.13) mRNA, complete cds Length = 1965 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 445 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 504 |||||||||||||| |||||||| ||||| ||||| | || || |||||||| || ||| Sbjct: 460 tttgattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtcca 519 Query: 505 gctggtgtcatgaa 518 |||||| ||||||| Sbjct: 520 gctggtatcatgaa 533
>gb|BT012702.1| Lycopersicon esculentum clone 113577R, mRNA sequence Length = 1952 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 475 agcaccatgtatggattcaagggaggcccagctggtgtcatgaagggcaagta 527 ||||| ||||||||||||| ||| || |||||||| ||||||||||| ||||| Sbjct: 463 agcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagta 515
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence Length = 123386 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 448 gattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggcccagct 507 ||||||||||| |||||||| ||||| ||||| | || || |||||||| || |||||| Sbjct: 61587 gattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtccagct 61646 Query: 508 ggtgtcatgaa 518 ||| ||||||| Sbjct: 61647 ggtatcatgaa 61657
>gb|AF095520.1|AF095520 Citrus X paradisi pyrophosphate-dependent phosphofructokinase beta subunit (PPi-PFKb) mRNA, complete cds Length = 2034 Score = 52.0 bits (26), Expect = 0.002 Identities = 116/146 (79%) Strand = Plus / Plus Query: 385 atcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgatctgcggcatc 444 ||||||||||| | || || || |||||||| || || ||||||||||||| || ||| Sbjct: 342 atcggcgtcgtcttgtctggaggtcaggcgccaggtggacacaatgtgatctctggaatc 401 Query: 445 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 504 | ||||||| ||||||| || || ||||| || |||||||||||| ||||| ||| Sbjct: 402 tatgattacttgcaggatcgcgcgaaagggagtgtactgtatggattcagaggaggtcca 461 Query: 505 gctggtgtcatgaagggcaagtacgt 530 ||||| |||||||| |||| ||||| Sbjct: 462 gctggaatcatgaagtgcaaatacgt 487
>gb|M55191.1|POTPFPB Potato pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) beta-subunit mRNA, complete cds Length = 1986 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 475 agcaccatgtatggattcaagggaggcccagctggtgtcatgaagggcaagta 527 ||||| |||||||| |||| ||| || |||||||| ||||||||||| ||||| Sbjct: 424 agcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagta 476
>gb|AY104192.1| Zea mays PCO077725 mRNA sequence Length = 1688 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 486 tggattcaagggaggcccagctggtgtcatgaagggcaa 524 |||||||||||||||||| ||||| |||||||| |||| Sbjct: 21 tggattcaagggaggccctgctgggatcatgaagtgcaa 59
>ref|NM_196561.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0075H14.17), mRNA Length = 1125 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 117 ggcggccgcggcggtggcctcc 138 |||||||||||||||||||||| Sbjct: 678 ggcggccgcggcggtggcctcc 657
>gb|AE007269.1| Sinorhizobium meliloti 1021 plasmid pSymA section 75 of 121 of the complete plasmid sequence Length = 8430 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 374 agccgctcaagatcggcgtcgt 395 |||||||||||||||||||||| Sbjct: 1075 agccgctcaagatcggcgtcgt 1096
>ref|XM_743809.1| Aspergillus fumigatus Af293 UbiE/COQ5 methyltransferase (Afu7g06080) partial mRNA Length = 831 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 225 cccctccgtcctccgctcccac 246 |||||||||||||||||||||| Sbjct: 42 cccctccgtcctccgctcccac 63
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 117 ggcggccgcggcggtggcctcc 138 |||||||||||||||||||||| Sbjct: 14512328 ggcggccgcggcggtggcctcc 14512307
>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14, complete sequence Length = 155420 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 117 ggcggccgcggcggtggcctcc 138 |||||||||||||||||||||| Sbjct: 126691 ggcggccgcggcggtggcctcc 126670
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 117 ggcggccgcggcggtggcctcc 138 |||||||||||||||||||||| Sbjct: 14520570 ggcggccgcggcggtggcctcc 14520549
>ref|XM_479456.1| Oryza sativa (japonica cultivar-group), mRNA Length = 929 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtggc 134 ||||||||||||||||||||| Sbjct: 69 catggcggccgcggcggtggc 49
>ref|XM_506556.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470D12.109 mRNA Length = 931 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtggc 134 ||||||||||||||||||||| Sbjct: 71 catggcggccgcggcggtggc 51
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acgggggcgcggcgcccgtgc 160 ||||||||||||||||||||| Sbjct: 18956 acgggggcgcggcgcccgtgc 18976
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acgggggcgcggcgcccgtgc 160 ||||||||||||||||||||| Sbjct: 49756 acgggggcgcggcgcccgtgc 49776
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gcctccgtcgtgccgaccgcc 357 ||||||||||||||||||||| Sbjct: 296077 gcctccgtcgtgccgaccgcc 296097
>gb|BC018090.1| Homo sapiens zinc finger protein 641, mRNA (cDNA clone MGC:27116 IMAGE:4791876), complete cds Length = 1832 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 217 ctgcccctcccctccgtcctccgct 241 |||||||||||||||| |||||||| Sbjct: 58 ctgcccctcccctccgccctccgct 34
>gb|AC024257.25| Homo sapiens 12 BAC RP11-370I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184125 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 217 ctgcccctcccctccgtcctccgct 241 |||||||||||||||| |||||||| Sbjct: 155599 ctgcccctcccctccgccctccgct 155623
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtggc 134 ||||||||||||||||||||| Sbjct: 28299065 catggcggccgcggcggtggc 28299045 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 catggcggccgcggcggtggcctc 137 |||||||| ||||||||||||||| Sbjct: 21411677 catggcggtcgcggcggtggcctc 21411700
>gb|AC010336.8| Homo sapiens chromosome 19 clone CTD-3193O13, complete sequence Length = 160770 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 220 cccctcccctccgtcctccgctccc 244 |||||||||||| |||||||||||| Sbjct: 4840 cccctcccctccctcctccgctccc 4816
>gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102F19, complete sequence Length = 143619 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 220 cccctcccctccgtcctccgctccc 244 |||||||||||| |||||||||||| Sbjct: 126739 cccctcccctccctcctccgctccc 126715
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtggc 134 ||||||||||||||||||||| Sbjct: 24628 catggcggccgcggcggtggc 24608
>emb|X94677.1|BHV1ULGNS Bovine herpesvirus type 1 genes for UL[27,28,29,30,31] Length = 10500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acgggggcgcggcgcccgtgc 160 ||||||||||||||||||||| Sbjct: 4680 acgggggcgcggcgcccgtgc 4700
>dbj|AK102921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114C10, full insert sequence Length = 931 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtggc 134 ||||||||||||||||||||| Sbjct: 71 catggcggccgcggcggtggc 51
>dbj|AK060349.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F05, full insert sequence Length = 929 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtggc 134 ||||||||||||||||||||| Sbjct: 69 catggcggccgcggcggtggc 49
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 ccgagccggtcgcgtcgaagccgct 380 |||||||||||||| |||||||||| Sbjct: 2901983 ccgagccggtcgcgccgaagccgct 2902007 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 gccggtcgcgtcgaagccgc 379 |||||||||||||||||||| Sbjct: 2922132 gccggtcgcgtcgaagccgc 2922113
>ref|NM_111209.2| Arabidopsis thaliana protein binding / serine-type endopeptidase/ serine-type peptidase/ trypsin AT3G03380 mRNA, complete cds Length = 3602 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 376 ccgctcaagatcggcgtcgtgctctcgg 403 ||||| ||||| |||||||||||||||| Sbjct: 218 ccgctgaagattggcgtcgtgctctcgg 245
>ref|XM_478609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 catggcggccgcggcggtggcctc 137 |||||||| ||||||||||||||| Sbjct: 36 catggcggtcgcggcggtggcctc 59
>ref|XM_589538.2| PREDICTED: Bos taurus similar to CG4036-PA, transcript variant 1 (LOC512094), mRNA Length = 2016 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 atggcggccgcggcggtggc 134 |||||||||||||||||||| Sbjct: 1 atggcggccgcggcggtggc 20
>ref|XM_364800.1| Magnaporthe grisea 70-15 hypothetical protein (MG09645.4) partial mRNA Length = 6354 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 gggcggccaggcgccgggcg 421 |||||||||||||||||||| Sbjct: 5578 gggcggccaggcgccgggcg 5559
>emb|CR956431.10| Pig DNA sequence from clone PigE-60M9 on chromosome 7, complete sequence Length = 206517 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 gcacatgctgcccctcccct 229 |||||||||||||||||||| Sbjct: 160099 gcacatgctgcccctcccct 160118
>emb|CR956369.6| Pig DNA sequence from clone PigI-416G4 on chromosome 7, complete sequence Length = 140162 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 gcacatgctgcccctcccct 229 |||||||||||||||||||| Sbjct: 48221 gcacatgctgcccctcccct 48240
>gb|AC009895.4|ATAC009895 Arabidopsis thaliana chromosome III BAC T21P5 genomic sequence, complete sequence Length = 82289 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 376 ccgctcaagatcggcgtcgtgctctcgg 403 ||||| ||||| |||||||||||||||| Sbjct: 60281 ccgctgaagattggcgtcgtgctctcgg 60254
>emb|CR645276.2|CNS0EWV6 Tetraodon nigroviridis full-length cDNA Length = 1178 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gcccctcccctccgtcctcc 238 |||||||||||||||||||| Sbjct: 458 gcccctcccctccgtcctcc 439
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 cgggcggccaggcgccgggcgggc 424 ||||||| |||||||||||||||| Sbjct: 232908 cgggcgggcaggcgccgggcgggc 232885
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cttcaccctcgccgacgggc 265 |||||||||||||||||||| Sbjct: 1549713 cttcaccctcgccgacgggc 1549732
>gb|AE005754.1| Caulobacter crescentus CB15 section 80 of 359 of the complete genome Length = 13654 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcccgccagcaccgcagcg 282 |||||||||||||||||||| Sbjct: 2966 ggcccgccagcaccgcagcg 2985
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 tgcaggagcgtgccaaaggc 474 |||||||||||||||||||| Sbjct: 3177183 tgcaggagcgtgccaaaggc 3177202
>gb|AY078951.1| Arabidopsis thaliana AT3g03380/T21P5_20 mRNA, complete cds Length = 3604 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 376 ccgctcaagatcggcgtcgtgctctcgg 403 ||||| ||||| |||||||||||||||| Sbjct: 218 ccgctgaagattggcgtcgtgctctcgg 245
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 tgtcatgaagggcaagtacg 529 |||||||||||||||||||| Sbjct: 3201998 tgtcatgaagggcaagtacg 3202017
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tggcggccgcggcggtggcc 135 |||||||||||||||||||| Sbjct: 5408437 tggcggccgcggcggtggcc 5408456
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gcccgggcgcctcgcgtccg 178 |||||||||||||||||||| Sbjct: 816415 gcccgggcgcctcgcgtccg 816434
>emb|CR386426.1| Gallus gallus finished cDNA, clone ChEST235h1 Length = 635 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ggcggccaggcgccgggcgg 422 |||||||||||||||||||| Sbjct: 533 ggcggccaggcgccgggcgg 514
>gb|AF375824.1|AF375824 Chlamydomonas reinhardtii mating type protein Mat3p (mat3) gene, complete cds Length = 7056 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tggcggccgcggcggtggcc 135 |||||||||||||||||||| Sbjct: 5535 tggcggccgcggcggtggcc 5554
>emb|BX842421.1|CNS0A7UF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZA10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2544 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 376 ccgctcaagatcggcgtcgtgctctcgg 403 ||||| ||||| |||||||||||||||| Sbjct: 218 ccgctgaagattggcgtcgtgctctcgg 245
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 atggcggccgcggcggtggc 134 |||||||||||||||||||| Sbjct: 8641347 atggcggccgcggcggtggc 8641366
>gb|BT002727.1| Arabidopsis thaliana At3g03380/T21P5_20 gene, complete cds Length = 3294 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 376 ccgctcaagatcggcgtcgtgctctcgg 403 ||||| ||||| |||||||||||||||| Sbjct: 113 ccgctgaagattggcgtcgtgctctcgg 140
>gb|AY588243.1| Chlamydomonas reinhardtii putative ammonium transporter (Amt1-5b) mRNA, partial cds Length = 1776 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtgg 133 |||||||||||||||||||| Sbjct: 43 catggcggccgcggcggtgg 24
>gb|AY542492.2| Chlamydomonas reinhardtii putative ammonium transporter (Amt1-5a) mRNA, partial cds Length = 2142 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 catggcggccgcggcggtgg 133 |||||||||||||||||||| Sbjct: 409 catggcggccgcggcggtgg 390
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 gcgtcgtgctctcgggcggc 408 |||||||||||||||||||| Sbjct: 7267720 gcgtcgtgctctcgggcggc 7267701
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gccccgatgagatcgccaag 306 |||||||||||||||||||| Sbjct: 1705741 gccccgatgagatcgccaag 1705722
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tggcggccgcggcggtggcc 135 |||||||||||||||||||| Sbjct: 1752098 tggcggccgcggcggtggcc 1752117
>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1729_E01 Length = 155527 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 catggcggccgcggcggtggcctc 137 |||||||| ||||||||||||||| Sbjct: 55733 catggcggtcgcggcggtggcctc 55756
>gb|AF080073.1|SMPCAS2 Sinorhizobium meliloti putative propionyl-CoA carboxylase alpha subunit homolog (pccA) gene, partial cds; methylmalonyl-CoA mutase (bhbA) gene, complete cds; and GNTR homolog (gntR) gene, partial cds Length = 3148 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cttcaccctcgccgacgggc 265 |||||||||||||||||||| Sbjct: 1146 cttcaccctcgccgacgggc 1165
>emb|CR846973.1| Takifugu rubripes DNA, highly conserved vertebrate non-coding sequence, element ID CNE869 Length = 129 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaccccgcggcgacacgc 25 |||||||||||||||||||| Sbjct: 111 aaaaccccgcggcgacacgc 92
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 gcgtcgtgctctcgggcggc 408 |||||||||||||||||||| Sbjct: 3457974 gcgtcgtgctctcgggcggc 3457955 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ggccgcggcggtggcctcca 139 |||||||||||||||||||| Sbjct: 1579810 ggccgcggcggtggcctcca 1579829
>dbj|AP004500.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05P21, TM0032, complete sequence Length = 106632 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 cccctcccctccgtcctccg 239 |||||||||||||||||||| Sbjct: 21652 cccctcccctccgtcctccg 21633
>gb|M57300.1|DROADHM Drosophila mettleri alcohol dehydrogenase gene, complete cds, and alcohol dehydrogenase pseudogene, complete Length = 4616 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 caagggaggcccagctggtgtcat 515 |||||||||||||| ||||||||| Sbjct: 3418 caagggaggcccaggtggtgtcat 3441 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 caagggaggcccagctggtgtcat 515 |||||||||||||| ||||||||| Sbjct: 1293 caagggaggcccaggtggtgtcat 1316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,484,942 Number of Sequences: 3902068 Number of extensions: 3484942 Number of successful extensions: 80997 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79092 Number of HSP's gapped (non-prelim): 1905 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
