ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
2dbj|AK068306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
4emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 86 1e-13
5emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494... 86 1e-13
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
7dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
8dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
9dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
10gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.032
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
12ref|XM_541885.2| PREDICTED: Canis familiaris similar to bassoon ... 42 2.0
13gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complet... 42 2.0
14gb|AC103935.10| Mus musculus chromosome 8, clone RP23-431O7, com... 42 2.0
15ref|NM_202061.1| Arabidopsis thaliana transcription factor AT1G0... 40 7.8
16ref|NM_100674.2| Arabidopsis thaliana transcription factor AT1G0... 40 7.8
17gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
18gb|AC157598.4| Mus musculus BAC clone RP23-193D3 from chromosome... 40 7.8
19gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
20gb|AE009073.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 7.8
21gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 7.8
22gb|AY386264.1| Orf virus strain OV-SA00, complete genome 40 7.8
23gb|AY386263.1| Orf virus strain OV-IA82, complete genome 40 7.8
24gb|AY096723.1| Arabidopsis thaliana putative GATA transcription ... 40 7.8
25gb|CP000088.1| Thermobifida fusca YX, complete genome 40 7.8
26gb|AY063953.1| Arabidopsis thaliana putative GATA transcription ... 40 7.8
27gb|AC008484.7| Homo sapiens chromosome 5 clone CTC-412D23, compl... 40 7.8
28gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete... 40 7.8
29gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete... 40 7.8
30gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 7.8
31ref|XM_943168.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 7.8
32gb|DQ184476.1| Orf virus strain NZ2, complete genome 40 7.8
33gb|AC091986.3| Homo sapiens chromosome 5 clone RP11-68K1, comple... 40 7.8
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
35emb|BX814570.1|CNS0ADJX Arabidopsis thaliana Full-length cDNA Co... 40 7.8
36emb|BX813393.1|CNS0ADJ8 Arabidopsis thaliana Full-length cDNA Co... 40 7.8
37gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complet... 40 7.8
38gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete ... 40 7.8
39gb|AC026875.4|AC026875 Genomic sequence for Arabidopsis thaliana... 40 7.8
40gb|AC126767.2| Homo sapiens chromosome 5 clone RP11-249M12, comp... 40 7.8
41dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
42dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
43gb|AC102839.24| Mus musculus chromosome 5, clone RP24-343D8, com... 40 7.8
44gb|AC105335.27| Mus musculus chromosome 5, clone RP23-377H14, co... 40 7.8
45gb|DQ087238.1| Hypocrea pachybasioides RNA polymerase B subunit ... 40 7.8
46emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136... 40 7.8
47gb|CP000036.1| Shigella boydii Sb227, complete genome 40 7.8 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                           
Query: 395     gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
               ||||||||||||| ||||| | |||||||||||||| ||| ||||||| || ||||||||
Sbjct: 3495683 gaggaggtgcctgaactgcgacgcggtggagacgccacagtggaggtcgggcccgatggg 3495742

                                          
Query: 455     gcggggtaccctctgcaacgcctgcgg 481
               | || | || |||||||||||||||||
Sbjct: 3495743 gaggagcacgctctgcaacgcctgcgg 3495769



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    cgctctccccgcaacggcgc 162
              ||||||||||||||||||||
Sbjct: 685319 cgctctccccgcaacggcgc 685338
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>dbj|AK068306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136H07, full
           insert sequence
          Length = 1612

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                       
Query: 395 gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
           ||||||||||||| ||||| | |||||||||||||| ||| ||||||| || ||||||||
Sbjct: 565 gaggaggtgcctgaactgcgacgcggtggagacgccacagtggaggtcgggcccgatggg 624

                                      
Query: 455 gcggggtaccctctgcaacgcctgcgg 481
           | || | || |||||||||||||||||
Sbjct: 625 gaggagcacgctctgcaacgcctgcgg 651
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                           
Query: 395     gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
               ||||||||||||| ||||| | |||||||||||||| ||| ||||||| || ||||||||
Sbjct: 3495628 gaggaggtgcctgaactgcgacgcggtggagacgccacagtggaggtcgggcccgatggg 3495687

                                          
Query: 455     gcggggtaccctctgcaacgcctgcgg 481
               | || | || |||||||||||||||||
Sbjct: 3495688 gaggagcacgctctgcaacgcctgcgg 3495714



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    cgctctccccgcaacggcgc 162
              ||||||||||||||||||||
Sbjct: 685319 cgctctccccgcaacggcgc 685338
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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                         
Query: 395   gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
             ||||||||||||| ||||| | |||||||||||||| ||| ||||||| || ||||||||
Sbjct: 10611 gaggaggtgcctgaactgcgacgcggtggagacgccacagtggaggtcgggcccgatggg 10670

                                        
Query: 455   gcggggtaccctctgcaacgcctgcgg 481
             | || | || |||||||||||||||||
Sbjct: 10671 gaggagcacgctctgcaacgcctgcgg 10697
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>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 116371

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                         
Query: 395   gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
             ||||||||||||| ||||| | |||||||||||||| ||| ||||||| || ||||||||
Sbjct: 36232 gaggaggtgcctgaactgcgacgcggtggagacgccacagtggaggtcgggcccgatggg 36173

                                        
Query: 455   gcggggtaccctctgcaacgcctgcgg 481
             | || | || |||||||||||||||||
Sbjct: 36172 gaggagcacgctctgcaacgcctgcgg 36146
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 421      tggagacgccgcagcggaggtcagggccgatggggcg 457
                |||||||||||||| |||||  |||||||||||||||
Sbjct: 10154119 tggagacgccgcagtggagggaagggccgatggggcg 10154155
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>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0581F09
          Length = 154248

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 421    tggagacgccgcagcggaggtcagggccgatggggcg 457
              |||||||||||||| |||||  |||||||||||||||
Sbjct: 101588 tggagacgccgcagtggagggaagggccgatggggcg 101624
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>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0498A12
          Length = 159749

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 421   tggagacgccgcagcggaggtcagggccgatggggcg 457
             |||||||||||||| |||||  |||||||||||||||
Sbjct: 19433 tggagacgccgcagtggagggaagggccgatggggcg 19469
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>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0004B13
          Length = 142268

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 421   tggagacgccgcagcggaggtcagggccgatggggcg 457
             |||||||||||||| |||||  |||||||||||||||
Sbjct: 78718 tggagacgccgcagtggagggaagggccgatggggcg 78754
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>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12,
              complete sequence
          Length = 135323

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 421    tggagacgccgcagcggaggtcagggccgatggggc 456
              |||||||||||||| |||||  ||||||||||||||
Sbjct: 112124 tggagacgccgcagtggagggaagggccgatggggc 112159
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 421      tggagacgccgcagcggaggtcagggccgatggggc 456
                |||||||||||||| |||||  ||||||||||||||
Sbjct: 11542630 tggagacgccgcagtggagggaagggccgatggggc 11542665



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                            
Query: 395      gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
                |||||||||||| |||||| || |||   ||||||||||| ||||| | ||||| |||||
Sbjct: 25633634 gaggaggtgcctccactgcgagacggacaagacgccgcagtggaggacggggcccatggg 25633693
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>ref|XM_541885.2| PREDICTED: Canis familiaris similar to bassoon (LOC484769), mRNA
          Length = 11766

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 263  cttcatccagccgctgccgccggctgggg 291
            |||| |||||||||||||| |||||||||
Sbjct: 3025 cttcttccagccgctgccggcggctgggg 2997
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>gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complete sequence
          Length = 235915

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 300    aacgaagaggaggggagaagg 320
              |||||||||||||||||||||
Sbjct: 223944 aacgaagaggaggggagaagg 223964
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>gb|AC103935.10| Mus musculus chromosome 8, clone RP23-431O7, complete sequence
          Length = 205702

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 300  aacgaagaggaggggagaagg 320
            |||||||||||||||||||||
Sbjct: 1732 aacgaagaggaggggagaagg 1752
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>ref|NM_202061.1| Arabidopsis thaliana transcription factor AT1G08000 transcript
           variant AT1G08000.2 mRNA, complete cds
          Length = 1384

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 accctctgcaacgcctgcggagtc 485
           |||||||||||||| |||||||||
Sbjct: 955 accctctgcaacgcttgcggagtc 978
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>ref|NM_100674.2| Arabidopsis thaliana transcription factor AT1G08000 transcript
           variant AT1G08000.1 mRNA, complete cds
          Length = 1373

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 accctctgcaacgcctgcggagtc 485
           |||||||||||||| |||||||||
Sbjct: 944 accctctgcaacgcttgcggagtc 967
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>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
              complete sequence
          Length = 169073

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                          
Query: 395    gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
              |||||||||||| |||||| || |||   ||||||||||| ||||| | ||||| |||||
Sbjct: 150041 gaggaggtgcctccactgcgagacggacaagacgccgcagtggaggacggggcccatggg 150100
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>gb|AC157598.4| Mus musculus BAC clone RP23-193D3 from chromosome 17, complete sequence
          Length = 222399

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    gaggcggcggcgttgggggg 101
             ||||||||||||||||||||
Sbjct: 37877 gaggcggcggcgttgggggg 37896
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>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07,
             complete sequence
          Length = 147122

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 395   gaggaggtgcctgcactgcaaggcggtggagacgccgcagcggaggtcagggccgatggg 454
             |||||||||||| |||||| || |||   ||||||||||| ||||| | ||||| |||||
Sbjct: 46003 gaggaggtgcctccactgcgagacggacaagacgccgcagtggaggacggggcccatggg 46062
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>gb|AE009073.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 99 of
            256 of the complete sequence
          Length = 10935

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  acggcgctccccgccgtcgt 175
            ||||||||||||||||||||
Sbjct: 1927 acggcgctccccgccgtcgt 1946
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     ccgccttgaggccgccgtcc 198
               ||||||||||||||||||||
Sbjct: 1998503 ccgccttgaggccgccgtcc 1998484
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>gb|AY386264.1| Orf virus strain OV-SA00, complete genome
          Length = 139962

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   acgggacgctgccggagcac 518
             ||||||||||||||||||||
Sbjct: 94576 acgggacgctgccggagcac 94595
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>gb|AY386263.1| Orf virus strain OV-IA82, complete genome
          Length = 137241

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   acgggacgctgccggagcac 518
             ||||||||||||||||||||
Sbjct: 93427 acgggacgctgccggagcac 93446
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>gb|AY096723.1| Arabidopsis thaliana putative GATA transcription factor 3
           (At1g08000) mRNA, complete cds
          Length = 958

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 accctctgcaacgcctgcggagtc 485
           |||||||||||||| |||||||||
Sbjct: 718 accctctgcaacgcttgcggagtc 741
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     ggcgctccccgccgtcgtct 177
               ||||||||||||||||||||
Sbjct: 1161754 ggcgctccccgccgtcgtct 1161773
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>gb|AY063953.1| Arabidopsis thaliana putative GATA transcription factor 3
           (At1g08000) mRNA, complete cds
          Length = 1297

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 accctctgcaacgcctgcggagtc 485
           |||||||||||||| |||||||||
Sbjct: 851 accctctgcaacgcttgcggagtc 874
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>gb|AC008484.7| Homo sapiens chromosome 5 clone CTC-412D23, complete sequence
          Length = 59451

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    gttggggggaaggaggatgg 112
             ||||||||||||||||||||
Sbjct: 51331 gttggggggaaggaggatgg 51312
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>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence
          Length = 102653

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   catggccggaggcggcggcg 93
            ||||||||||||||||||||
Sbjct: 2436 catggccggaggcggcggcg 2417
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>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence
          Length = 127686

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    catggccggaggcggcggcg 93
             ||||||||||||||||||||
Sbjct: 87061 catggccggaggcggcggcg 87042
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     acggcgctccccgccgtcgt 175
               ||||||||||||||||||||
Sbjct: 1085591 acggcgctccccgccgtcgt 1085610
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>ref|XM_943168.1| PREDICTED: Homo sapiens hypothetical protein LOC647989 (LOC647989),
           mRNA
          Length = 726

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cgctgccgccggctggggac 293
           ||||||||||||||||||||
Sbjct: 666 cgctgccgccggctggggac 647
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>gb|DQ184476.1| Orf virus strain NZ2, complete genome
          Length = 137820

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   acgggacgctgccggagcac 518
             ||||||||||||||||||||
Sbjct: 93835 acgggacgctgccggagcac 93854
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>gb|AC091986.3| Homo sapiens chromosome 5 clone RP11-68K1, complete sequence
          Length = 160760

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gttggggggaaggaggatgg 112
             ||||||||||||||||||||
Sbjct: 84438 gttggggggaaggaggatgg 84457
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 80       cggaggcggcggcgttggggggaaggag 107
                |||||||||||||| ||||| |||||||
Sbjct: 24144530 cggaggcggcggcggtggggagaaggag 24144557
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>emb|BX814570.1|CNS0ADJX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB81ZD02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1206

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 accctctgcaacgcctgcggagtc 485
           |||||||||||||| |||||||||
Sbjct: 849 accctctgcaacgcttgcggagtc 872
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>emb|BX813393.1|CNS0ADJ8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB14ZH02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 462 accctctgcaacgcctgcggagtc 485
           |||||||||||||| |||||||||
Sbjct: 959 accctctgcaacgcttgcggagtc 982
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>gb|AC103564.5| Homo sapiens BAC clone RP11-788A1 from 2, complete sequence
          Length = 106117

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   cgctgccgccggctggggac 293
             ||||||||||||||||||||
Sbjct: 23646 cgctgccgccggctggggac 23627
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>gb|AC093724.3| Homo sapiens BAC clone RP11-1L5 from 2, complete sequence
          Length = 161617

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    cgctgccgccggctggggac 293
              ||||||||||||||||||||
Sbjct: 104872 cgctgccgccggctggggac 104853
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>gb|AC026875.4|AC026875 Genomic sequence for Arabidopsis thaliana BAC T6D22 from chromosome I,
             complete sequence
          Length = 120965

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 462   accctctgcaacgcctgcggagtc 485
             |||||||||||||| |||||||||
Sbjct: 39564 accctctgcaacgcttgcggagtc 39541
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>gb|AC126767.2| Homo sapiens chromosome 5 clone RP11-249M12, complete sequence
          Length = 172289

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     gttggggggaaggaggatgg 112
              ||||||||||||||||||||
Sbjct: 131836 gttggggggaaggaggatgg 131855
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>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417G12
          Length = 163568

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    cggaggcggcggcgttggggggaaggag 107
             |||||||||||||| ||||| |||||||
Sbjct: 77988 cggaggcggcggcggtggggagaaggag 78015
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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0429G06
          Length = 158321

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 80     cggaggcggcggcgttggggggaaggag 107
              |||||||||||||| ||||| |||||||
Sbjct: 154223 cggaggcggcggcggtggggagaaggag 154250
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>gb|AC102839.24| Mus musculus chromosome 5, clone RP24-343D8, complete sequence
          Length = 196090

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    gaagaggaggggagaaggtt 322
              ||||||||||||||||||||
Sbjct: 190662 gaagaggaggggagaaggtt 190643
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>gb|AC105335.27| Mus musculus chromosome 5, clone RP23-377H14, complete sequence
          Length = 171789

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gaagaggaggggagaaggtt 322
              ||||||||||||||||||||
Sbjct: 107551 gaagaggaggggagaaggtt 107570
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>gb|DQ087238.1| Hypocrea pachybasioides RNA polymerase B subunit 2-like (rpb2)
           gene, partial sequence
          Length = 818

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 488 gtacagtaaaaacgggacgc 507
           ||||||||||||||||||||
Sbjct: 533 gtacagtaaaaacgggacgc 514
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>emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136_E08 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 118211

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   cgctctccccgcaacggcgc 162
             ||||||||||||||||||||
Sbjct: 93815 cgctctccccgcaacggcgc 93796
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 469     gcaacgcctgcggagtctgg 488
               ||||||||||||||||||||
Sbjct: 3172247 gcaacgcctgcggagtctgg 3172228


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,629,643
Number of Sequences: 3902068
Number of extensions: 3629643
Number of successful extensions: 86600
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85788
Number of HSP's gapped (non-prelim): 812
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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