ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804... 64 5e-07
2ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic... 64 5e-07
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
4dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
5dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
6ref|XM_476311.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
7emb|AL732499.6| Zebrafish DNA sequence from clone RP71-1C3 in li... 46 0.12
8dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
9ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804... 44 0.46
10ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic... 44 0.46
11gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.8
12gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.8
13gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.8
14emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, ... 42 1.8
15emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.8
16emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 42 1.8
17gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA 42 1.8
18ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mR... 42 1.8
19gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, r... 42 1.8
20gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, r... 42 1.8
21gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12... 42 1.8
22ref|NM_114592.3| Arabidopsis thaliana unknown protein AT3G47250 ... 40 7.1
23ref|NM_180331.1| Arabidopsis thaliana unknown protein AT3G47250 ... 40 7.1
24ref|NM_180330.1| Arabidopsis thaliana unknown protein AT3G47250 ... 40 7.1
25ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protei... 40 7.1
26ref|NM_153816.2| Homo sapiens sorting nexin 14 (SNX14), transcri... 40 7.1
27ref|NM_020468.2| Homo sapiens sorting nexin 14 (SNX14), transcri... 40 7.1
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.1
29emb|CR847573.11| Zebrafish DNA sequence from clone DKEY-247D15 i... 40 7.1
30gb|AC146152.2| Pan troglodytes BAC clone RP43-23M20 from 7, comp... 40 7.1
31emb|BX927075.13| Zebrafish DNA sequence from clone CH211-234G3 i... 40 7.1
32emb|AL589666.5| Human DNA sequence from clone RP11-321N4 on chro... 40 7.1
33gb|AY096508.1| Arabidopsis thaliana unknown protein (At3g47250) ... 40 7.1
34gb|AY065203.1| Arabidopsis thaliana unknown protein (At3g47250) ... 40 7.1
35gb|BC095419.1| Homo sapiens sorting nexin 14, transcript variant... 40 7.1
36gb|BC068589.1| Homo sapiens sorting nexin 14, transcript variant... 40 7.1
37gb|BC046520.2| Homo sapiens sorting nexin 14, mRNA (cDNA clone I... 40 7.1
38emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BA... 40 7.1
39emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, B... 40 7.1
40gb|AY140046.1| Arabidopsis thaliana unknown protein mRNA, comple... 40 7.1
41gb|BC005110.1| Homo sapiens sorting nexin 14, transcript variant... 40 7.1
42gb|AC148834.3| Pan troglodytes BAC clone CH251-4D23 from chromos... 40 7.1
43dbj|AK095380.1| Homo sapiens cDNA FLJ38061 fis, clone CTONG20149... 40 7.1
44dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 7.1
45gb|AY044865.1| Homo sapiens sorting nexin 14 (SNX14) mRNA, compl... 40 7.1
46gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 40 7.1
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
48emb|BX822647.1|CNS0A720 Arabidopsis thaliana Full-length cDNA Co... 40 7.1
49dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.1
50emb|BX664619.13| Mouse DNA sequence from clone RP23-349B9 on chr... 40 7.1
51dbj|AK000362.1| Homo sapiens cDNA FLJ20355 fis, clone HEP15804, ... 40 7.1
52gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromoso... 40 7.1
53emb|AL672147.10| Mouse DNA sequence from clone RP23-434N14 on ch... 40 7.1
54emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for ... 40 7.1 
>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA
          Length = 1059

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 155 ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 206
           |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>ref|XM_476310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 155 ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 206
           |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 155     ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 206
               |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 3907430 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3907481



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 155     ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 206
               |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 3857551 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3857602



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 86      cgccggcgtgaaggagccaccgagccagtac 116
               |||||||||| ||||||||||||||| ||||
Sbjct: 3911444 cgccggcgtgcaggagccaccgagccggtac 3911474



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 69      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3904520 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3904573



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 69      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3892697 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3892750



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 69      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3854641 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3854694
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 155   ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 206
             |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 13306 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 13357



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 86    cgccggcgtgaaggagccaccgagccagtac 116
             |||||||||| ||||||||||||||| ||||
Sbjct: 17320 cgccggcgtgcaggagccaccgagccggtac 17350



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 69    gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
             ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 10396 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 10449
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 155    ctccgagatgcccgagcccatccccatcatcgacctcagccggctctctgcc 206
              |||||| ||||| |||||||||||| || |||||||||||||||| ||||||
Sbjct: 115505 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 115556



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 69     gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
              ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 150651 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 150704



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 69     gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
              ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 112595 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 112648
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>ref|XM_476311.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 86  cgccggcgtgaaggagccaccgagccagtac 116
           |||||||||| ||||||||||||||| ||||
Sbjct: 48  cgccggcgtgcaggagccaccgagccggtac 78
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>emb|AL732499.6| Zebrafish DNA sequence from clone RP71-1C3 in linkage group 19 Contains
              part of a novel gene similar to CSMD (CUB and sushi
              multiple domains protein), complete sequence
          Length = 161104

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 344    agaagagaaacaaaagtactcaaacat 370
              |||||||||||||||||||||| ||||
Sbjct: 149274 agaagagaaacaaaagtactcacacat 149300
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>dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full
           insert sequence
          Length = 1303

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 86  cgccggcgtgaaggagccaccgagccagtac 116
           |||||||||| ||||||||||||||| ||||
Sbjct: 143 cgccggcgtgcaggagccaccgagccggtac 173
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>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA
          Length = 1164

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 69  gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
           ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87
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>ref|XM_476309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 69  gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 122
           ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 445     ggaacgaccggctcaatctcc 465
               |||||||||||||||||||||
Sbjct: 1011958 ggaacgaccggctcaatctcc 1011938
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 212     cgccgaggagttcgacaggctgcggtccg 240
               |||||||||||||||| ||| ||||||||
Sbjct: 3150728 cgccgaggagttcgactggccgcggtccg 3150756
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 296    tcttgccgaggcgatgaacgccacc 320
              ||||||||| |||||||||||||||
Sbjct: 472679 tcttgccgacgcgatgaacgccacc 472655
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>emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, complete sequence
          Length = 223119

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 339    tcaatagaagagaaacaaaag 359
              |||||||||||||||||||||
Sbjct: 186642 tcaatagaagagaaacaaaag 186622
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    cggcagcgccgaggagttcga 226
              |||||||||||||||||||||
Sbjct: 182766 cggcagcgccgaggagttcga 182786
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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    cggcagcgccgaggagttcga 226
              |||||||||||||||||||||
Sbjct: 330146 cggcagcgccgaggagttcga 330166
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>gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA
          Length = 3809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 167  cgagcccatccccatcatcga 187
            |||||||||||||||||||||
Sbjct: 1397 cgagcccatccccatcatcga 1417
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>ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mRNA, complete cds
          Length = 3791

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 167  cgagcccatccccatcatcga 187
            |||||||||||||||||||||
Sbjct: 1408 cgagcccatccccatcatcga 1428
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>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone
              BACR26A07, complete sequence
          Length = 172436

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 167    cgagcccatccccatcatcga 187
              |||||||||||||||||||||
Sbjct: 170384 cgagcccatccccatcatcga 170364
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>gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone
             BACR03G07, complete sequence
          Length = 170064

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 167   cgagcccatccccatcatcga 187
             |||||||||||||||||||||
Sbjct: 58306 cgagcccatccccatcatcga 58286
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>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete
             sequence
          Length = 304674

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 167   cgagcccatccccatcatcga 187
             |||||||||||||||||||||
Sbjct: 81523 cgagcccatccccatcatcga 81503
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>ref|NM_114592.3| Arabidopsis thaliana unknown protein AT3G47250 transcript variant
           AT3G47250.1 mRNA, complete cds
          Length = 1820

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 812 ttcttcaacctctcaataga 831
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>ref|NM_180331.1| Arabidopsis thaliana unknown protein AT3G47250 transcript variant
           AT3G47250.3 mRNA, complete cds
          Length = 1749

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 741 ttcttcaacctctcaataga 760
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>ref|NM_180330.1| Arabidopsis thaliana unknown protein AT3G47250 transcript variant
           AT3G47250.2 mRNA, complete cds
          Length = 1772

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 764 ttcttcaacctctcaataga 783
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>ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protein; DOS/Gab family
            member 3 (LOC428717), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 169  agcccatccccatcatcgacctca 192
            ||||||||| ||||||||||||||
Sbjct: 1376 agcccatccgcatcatcgacctca 1399
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>ref|NM_153816.2| Homo sapiens sorting nexin 14 (SNX14), transcript variant 1, mRNA
          Length = 3509

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 419 gtaagagagaatcaggtcct 400
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>ref|NM_020468.2| Homo sapiens sorting nexin 14 (SNX14), transcript variant 2, mRNA
          Length = 3350

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 419 gtaagagagaatcaggtcct 400
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     acaaaagtactcaaacattg 372
               ||||||||||||||||||||
Sbjct: 2641890 acaaaagtactcaaacattg 2641909
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>emb|CR847573.11| Zebrafish DNA sequence from clone DKEY-247D15 in linkage group 14,
             complete sequence
          Length = 44028

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 507   acacaacccccttctttcag 526
             ||||||||||||||||||||
Sbjct: 39451 acacaacccccttctttcag 39432
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>gb|AC146152.2| Pan troglodytes BAC clone RP43-23M20 from 7, complete sequence
          Length = 141539

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    catggaatggagcctacctt 295
              ||||||||||||||||||||
Sbjct: 126493 catggaatggagcctacctt 126474
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>emb|BX927075.13| Zebrafish DNA sequence from clone CH211-234G3 in linkage group 3,
             complete sequence
          Length = 182166

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   aaaagtactcaaacattgtc 374
             ||||||||||||||||||||
Sbjct: 72795 aaaagtactcaaacattgtc 72814
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>emb|AL589666.5| Human DNA sequence from clone RP11-321N4 on chromosome 6 Contains the 3'
              end of the gene for sorting nexin 14 (SNX14), the 3' end of
              the NT5E gene for 5'-nucleotidase, ecto (CD73) and a novel
              gene, complete sequence
          Length = 129010

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    gtaagagagaatcaggtcct 439
              ||||||||||||||||||||
Sbjct: 118605 gtaagagagaatcaggtcct 118624
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>gb|AY096508.1| Arabidopsis thaliana unknown protein (At3g47250) mRNA, complete cds
          Length = 1474

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 682 ttcttcaacctctcaataga 701
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>gb|AY065203.1| Arabidopsis thaliana unknown protein (At3g47250) mRNA, complete cds
          Length = 1764

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 812 ttcttcaacctctcaataga 831
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>gb|BC095419.1| Homo sapiens sorting nexin 14, transcript variant 1, mRNA (cDNA
           clone MGC:110946 IMAGE:5268442), complete cds
          Length = 3043

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 249 gtaagagagaatcaggtcct 230
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>gb|BC068589.1| Homo sapiens sorting nexin 14, transcript variant 1, mRNA (cDNA
           clone MGC:87608 IMAGE:4818366), complete cds
          Length = 3195

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 403 gtaagagagaatcaggtcct 384
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>gb|BC046520.2| Homo sapiens sorting nexin 14, mRNA (cDNA clone IMAGE:5267454),
           partial cds
          Length = 2884

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 119 gtaagagagaatcaggtcct 100
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>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8
          Length = 87224

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 306 ttcttcaacctctcaataga 287
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>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12
          Length = 140680

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    ttcttcaacctctcaataga 346
              ||||||||||||||||||||
Sbjct: 118313 ttcttcaacctctcaataga 118294
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>gb|AY140046.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 1722

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 764 ttcttcaacctctcaataga 783
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>gb|BC005110.1| Homo sapiens sorting nexin 14, transcript variant 2, mRNA (cDNA
           clone MGC:13217 IMAGE:3959086), complete cds
          Length = 3038

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 393 gtaagagagaatcaggtcct 374
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>gb|AC148834.3| Pan troglodytes BAC clone CH251-4D23 from chromosome 7, complete sequence
          Length = 192312

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    catggaatggagcctacctt 295
              ||||||||||||||||||||
Sbjct: 152861 catggaatggagcctacctt 152880
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>dbj|AK095380.1| Homo sapiens cDNA FLJ38061 fis, clone CTONG2014966, highly similar
           to SORTING NEXIN 14
          Length = 3616

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 737 gtaagagagaatcaggtcct 718
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 206     cggcagcgccgaggagttcg 225
               ||||||||||||||||||||
Sbjct: 1736775 cggcagcgccgaggagttcg 1736794
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>gb|AY044865.1| Homo sapiens sorting nexin 14 (SNX14) mRNA, complete cds
          Length = 2661

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 205 gtaagagagaatcaggtcct 186
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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   acaaaagtactcaaacattg 372
             ||||||||||||||||||||
Sbjct: 28204 acaaaagtactcaaacattg 28185
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     acaaaagtactcaaacattg 372
               ||||||||||||||||||||
Sbjct: 2642000 acaaaagtactcaaacattg 2642019
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>emb|BX822647.1|CNS0A720 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB56ZC08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1606

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 ttcttcaacctctcaataga 346
           ||||||||||||||||||||
Sbjct: 725 ttcttcaacctctcaataga 744
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     cgccgaggagttcgacaggc 231
               ||||||||||||||||||||
Sbjct: 4357679 cgccgaggagttcgacaggc 4357660
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>emb|BX664619.13| Mouse DNA sequence from clone RP23-349B9 on chromosome 11, complete
              sequence
          Length = 154608

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 486    agaacctacagactctggcc 505
              ||||||||||||||||||||
Sbjct: 121935 agaacctacagactctggcc 121954
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>dbj|AK000362.1| Homo sapiens cDNA FLJ20355 fis, clone HEP15804, highly similar to
           AF121863 Homo sapiens sorting nexin 14
          Length = 3145

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 gtaagagagaatcaggtcct 439
           ||||||||||||||||||||
Sbjct: 353 gtaagagagaatcaggtcct 334
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>gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromosome ul, complete
             sequence
          Length = 231142

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   agcccatccccatcatcgacctca 192
             ||||||||| ||||||||||||||
Sbjct: 67835 agcccatccgcatcatcgacctca 67858
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>emb|AL672147.10| Mouse DNA sequence from clone RP23-434N14 on chromosome X, complete
              sequence
          Length = 192252

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    gagaaacaaaagtactcaaa 367
              ||||||||||||||||||||
Sbjct: 179985 gagaaacaaaagtactcaaa 179966
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>emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for KvLQT1 voltage-gated delayed
           rectifier potassium channel (kvLQT1 gene)
          Length = 463

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 169 agcccatccccatcatcgacctca 192
           |||||||| |||||||||||||||
Sbjct: 134 agcccatctccatcatcgacctca 157


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,770,657
Number of Sequences: 3902068
Number of extensions: 3770657
Number of successful extensions: 71238
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70767
Number of HSP's gapped (non-prelim): 471
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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