ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
114KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 75 1e-13
2PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 69 1e-11
3CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 62 2e-09
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 40 0.004
5ZFNL3_ORYSA (Q5NAV3) Zinc finger CCCH type domain-containing pro... 30 4.9

>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 32/49 (65%), Positives = 42/49 (85%)
 Frame = +1

Query: 430 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLC 576
           +CP DALKLGVCA+VLN + N+ +G+PP  PCC+L++GL +LEAAVCLC
Sbjct: 53  KCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLC 101



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 29/48 (60%), Positives = 37/48 (77%)
 Frame = +1

Query: 433 CPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLC 576
           CPIDALKLG C +VL GLI++ +G   K+ CC L+ GL DL+AA+CLC
Sbjct: 261 CPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLC 308



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 30/49 (61%), Positives = 38/49 (77%)
 Frame = +1

Query: 430 RCPIDALKLGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLC 576
           RCPIDALKL VCA VL GL+  ++G P  + CC L++GL DL+AA+CLC
Sbjct: 47  RCPIDALKLKVCAKVL-GLV--KVGLPQYEQCCPLLEGLVDLDAALCLC 92



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/41 (51%), Positives = 24/41 (58%)
 Frame = +1

Query: 454 LGVCANVLNGLINLQLGTPPKKPCCTLIQGLADLEAAVCLC 576
           L +C N+L G     LGT     CC LI GL D+EA VCLC
Sbjct: 11  LSICLNILGG----SLGTVDD--CCALIGGLGDIEAIVCLC 45



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>ZFNL3_ORYSA (Q5NAV3) Zinc finger CCCH type domain-containing protein ZFN-like 3|
          Length = 466

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 527 QHGFFGGVPSCRLISPLSTLAHTPSFSA 444
           QHGF    P+C+   P+ TL+++PS S+
Sbjct: 356 QHGFCKFGPTCKFDHPMGTLSYSPSASS 383


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,893,738
Number of Sequences: 219361
Number of extensions: 430327
Number of successful extensions: 1136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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