>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat protein;|
           Protease (EC 3.4.23.-); Reverse transcriptase (EC
           2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
          Length = 1675

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 273 HDVDQATRRPSLEELLRMEASSSGLVDLERPKEPAEMVDAYDDD--DSWKESAIVVFDLS 446
           +D+D+  +  S+EE+ +   SS    ++   K P E   AY+DD  D WK   + V  + 
Sbjct: 452 YDLDKIEKAKSIEEIAKSSTSS----EIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIE 507

Query: 447 EGGD 458
              D
Sbjct: 508 ASKD 511

>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
 Frame = -1

Query: 425  GALLPGXXXXXXVDHLSGLLGP-LEVDETRRRRFHPEKLLEARPSRCLVDVVCSCTGGAR 249
            G+L             S L  P L  ++    RFH    LE+  S         C   +R
Sbjct: 1882 GSLRTSASDTSIRTFTSPLTSPKLLPEQGANSRFHMAVYLESDTS---------CPTTSR 1932

Query: 248  GPEDGDEGRADEPDDG-VPPPSCRPRLAVVG 159
             P  G EG+A   + G   PP+ R  LA+ G
Sbjct: 1933 SPRSGPEGKAPHANSGSASPPASRASLALAG 1963

>HEM3_IDILO (Q5QUS3) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 313

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -1

Query: 386 DHLSGLLGPLEVDETRRRRFHPEKLLEARPSRCLVDVVCSCTGGARGPEDGDE----GRA 219
           D +  LL PL+  ETR R      +L  R     +D  C    GA    +GDE    G  
Sbjct: 209 DEMKALLAPLQCQETRTR------VLAERAMNRGLDGGCQVPIGAYAELEGDEVYLRGLV 262

Query: 218 DEPDDG 201
            EPD G
Sbjct: 263 GEPDGG 268

>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)|
          Length = 2829

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +3

Query: 270  AHDVDQATRRPSLEELLRMEASSSGLVDLERPKEPAEMVDAYDDDDSWKESAIVVFDLSE 449
            + +V   TR       +     SS L +  +  +P   VD YDDD +   S     +  +
Sbjct: 1096 SENVPAYTRSRGANNQVDQSRVSSNLSNNSKASKPHCQVDDYDDDKTTNFSERYSEEEQQ 1155

Query: 450  GGDXSRRDKDEAPLAVSEERHG 515
              +  R++K       SEE HG
Sbjct: 1156 EDETERQNKYNIKAYASEEHHG 1177

>LRP10_MOUSE (Q7TQH7) Low-density lipoprotein receptor-related protein 10|
           precursor
          Length = 713

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 362 PLEVDETRRRRFHPEKLLEARPSRCLVDVVC-SCTGGARGPEDGDEGRADEPDDGVPPPS 186
           P    ETR       ++  + PS  L D    +C GGA G +DG++         +P PS
Sbjct: 573 PARAPETR------SQVTPSVPSEALDDSTGQACEGGAVGGQDGEQAPPLPIKTPIPTPS 626

Query: 185 CRPRLAVV 162
             P LA V
Sbjct: 627 TLPALATV 634

>PRTP_PRVIF (P11871) Probable processing and transport protein (Infected cell|
           protein 18.5)
          Length = 724

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -1

Query: 353 VDETRRRRFHPEKLLEARPSRCLVDVVCSCTGGARGPED-GDEGRADEPDDGVPPPS 186
           +D  R  R   E+LLE               GGA G  D GD G  DE   G PPP+
Sbjct: 394 LDPDRANRDALERLLEGGDD-------ADADGGAAGGADAGDGGVGDEDGPGAPPPA 443

>GLSN_MEDSA (Q03460) Glutamate synthase [NADH], chloroplast precursor (EC|
            1.4.1.14) (NADH-GOGAT)
          Length = 2194

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +3

Query: 267  AAHDVD------QATRRPSLEELLRMEASSSGLVDLERPKEPAEMVDA 392
            AA DVD      QA  + + EEL ++  +S      E PK P+++ DA
Sbjct: 1631 AAEDVDEQDDEAQAVEKDAFEELKKLATASLNEKPSEAPKRPSQVTDA 1678

>PI5K4_ARATH (Q9M1K2) Putative phosphatidylinositol-4-phosphate 5-kinase 4 (EC|
           2.7.1.68) (AtPIP5K4) (1-phosphatidylinositol-4-phosphate
           kinase 4) (PtdIns(4)P-5-kinase 4) (Diphosphoinositide
           kinase 4)
          Length = 779

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +3

Query: 237 VFGTACSAGAAAHDVDQATRRPSLEELLRMEASSSGLVDLERPKEPAEM 383
           ++GT    GAA  D+D  TRR    E++R+EA   G +   RP  PA M
Sbjct: 327 MWGTESGEGAA--DIDSTTRRDLDAEMMRLEA--EGFIQSLRP-SPAPM 370

>ATX3_RAT (O35815) Ataxin-3 (EC 3.4.22.-) (Machado-Joseph disease protein 1|
           homolog)
          Length = 355

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 285 QATRRPSL--EELLRMEASSSGLVDLERPKEPAEMVDAYDDDDSWKESAIVV 434
           Q   RP L  EEL  ++  S+   DLER  E A+    +DDD+   + A+ +
Sbjct: 184 QQMHRPKLIGEELAHLKEQSALKADLERVLEAADGPGMFDDDEDDLQRALAM 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,257,888
Number of Sequences: 219361
Number of extensions: 925137
Number of successful extensions: 4116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4110
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)