ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF521895.1|AF521896S2 Streptomyces hygroscopicus ansamycin bi... 44 0.51
2gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.0
3ref|XM_571701.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 2.0
4emb|BX040662.1|CNS093JE Single read from an extremity of a full-... 42 2.0
5emb|BX063934.1|CNS09LHU Single read from an extremity of a full-... 40 7.9
6emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 ... 40 7.9
7emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 ... 40 7.9

>gb|AF521895.1|AF521896S2 Streptomyces hygroscopicus ansamycin biosynthesis gene cluster,
            partial sequence
          Length = 12420

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 382  tggtcgacgcgtacgacgacga 403
            ||||||||||||||||||||||
Sbjct: 5875 tggtcgacgcgtacgacgacga 5854



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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
               sequence
          Length = 1438950

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 387     gacgcgtacgacgacgacgac 407
               |||||||||||||||||||||
Sbjct: 1291118 gacgcgtacgacgacgacgac 1291098



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>ref|XM_571701.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNF04440) partial mRNA
          Length = 3742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 387 gacgcgtacgacgacgacgac 407
           |||||||||||||||||||||
Sbjct: 10  gacgcgtacgacgacgacgac 30



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>emb|BX040662.1|CNS093JE Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC11CE02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 891

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 245 gaccgcgtgctccgccggtgc 265
           |||||||||||||||||||||
Sbjct: 28  gaccgcgtgctccgccggtgc 48



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>emb|BX063934.1|CNS09LHU Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC46AB01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 957

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 gaccgcgtgctccgccggtg 264
           ||||||||||||||||||||
Sbjct: 23  gaccgcgtgctccgccggtg 42



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>emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 in linkage group 8,
              complete sequence
          Length = 234864

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    agcttctcaggatggaagcg 332
              ||||||||||||||||||||
Sbjct: 230792 agcttctcaggatggaagcg 230773



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>emb|CR361554.35| Zebrafish DNA sequence from clone CH211-222L15 in linkage group 6,
              complete sequence
          Length = 187638

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    agcttctcaggatggaagcg 332
              ||||||||||||||||||||
Sbjct: 187209 agcttctcaggatggaagcg 187190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,107,680
Number of Sequences: 3902068
Number of extensions: 3107680
Number of successful extensions: 79907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79884
Number of HSP's gapped (non-prelim): 23
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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