ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UNG_BORPE (Q7VUM8) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 30 3.7
2UNG_BORPA (Q7W1Y7) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 30 3.7
3UNG_BORBR (Q7WQW5) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 30 3.7
4S13A3_MOUSE (Q91Y63) Solute carrier family 13 member 3 (Sodium-d... 29 8.2

>UNG_BORPE (Q7VUM8) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 250

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 525 LVPLRHHHLILSKHHPFPRSWLGTPS*FCDLCWHGRRSAKWVLRR 391
           LVP    HL+L+ +HP P S    P  F   C H R++  W+ +R
Sbjct: 185 LVPADAGHLVLAANHPSPLSARRPPVPFVG-CGHFRQTNAWLQQR 228



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>UNG_BORPA (Q7W1Y7) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 250

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 525 LVPLRHHHLILSKHHPFPRSWLGTPS*FCDLCWHGRRSAKWVLRR 391
           LVP    HL+L+ +HP P S    P  F   C H R++  W+ +R
Sbjct: 185 LVPADAGHLVLAANHPSPLSARRPPVPFVG-CGHFRQTNAWLQQR 228



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>UNG_BORBR (Q7WQW5) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 250

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 525 LVPLRHHHLILSKHHPFPRSWLGTPS*FCDLCWHGRRSAKWVLRR 391
           LVP    HL+L+ +HP P S    P  F   C H R++  W+ +R
Sbjct: 185 LVPADAGHLVLAANHPSPLSARRPPVPFVG-CGHFRQTNAWLQQR 228



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>S13A3_MOUSE (Q91Y63) Solute carrier family 13 member 3 (Sodium-dependent|
           high-affinity dicarboxylate transporter 2)
           (Na(+)/dicarboxylate cotransporter 3) (NaDC-3) (mNaDC3)
          Length = 600

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 282 IAQDGDESSVPGGVEGAIWQPRQQQLVAKSKAAHDPVVEAPTSPNVVRANRDHK--IKKG 455
           + ++GDES+      G    P + Q +A S+  H    EAP          +H+  I KG
Sbjct: 172 LPREGDESTAAVQGNGLRTVPTEMQFLASSEGGHTEDAEAPMELPDDSKEEEHRRNIWKG 231

Query: 456 FL 461
           FL
Sbjct: 232 FL 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,262,042
Number of Sequences: 219361
Number of extensions: 1412357
Number of successful extensions: 4064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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