ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart56a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSNA_ARATH (O64668) Presenilin-like protein At1g08700 54 3e-07
2PSNB_ARATH (Q9SIK7) Presenilin-like protein At2g29900 54 3e-07
3PSN1_XENLA (O12976) Presenilin-1 (EC 3.4.23.-) (Presenilin alpha... 40 0.005
4PSN1_PONPY (Q5R780) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains:... 38 0.015
5PSN1_MOUSE (P49769) Presenilin-1 (EC 3.4.23.-) (PS-1) (Protein S... 38 0.015
6PSN1_MICMU (P79802) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains:... 38 0.015
7PSN1_MACFA (Q8HXW5) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains:... 38 0.015
8PSN1_HUMAN (P49768) Presenilin-1 (EC 3.4.23.-) (PS-1) (Protein S... 38 0.015
9PSN1_BRARE (Q9W6T7) Presenilin-1 (EC 3.4.23.-) (PS1) (Zf-PS1) 38 0.015
10PSN1_BOVIN (Q9XT97) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains:... 38 0.015
11PSN1_RAT (P97887) Presenilin-1 (EC 3.4.23.-) (PS-1) (Protein S18... 38 0.015
12PSN1_CHICK (Q4JIM4) Presenilin-1 (EC 3.4.23.-) (PS-2) [Contains:... 38 0.015
13PSN1_CANFA (Q6RH31) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains:... 38 0.015
14PSN_DROME (O02194) Presenilin homolog (EC 3.4.23.-) (dPS) (DmPS) 37 0.034
15PSN2_RAT (O88777) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: P... 36 0.058
16PSN2_MOUSE (Q61144) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains:... 36 0.058
17PSN2_HUMAN (P49810) Presenilin-2 (EC 3.4.23.-) (PS-2) (STM-2) (E... 36 0.058
18PSN2_MICMU (P79801) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains:... 36 0.058
19PSN2_BOVIN (Q9XT96) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains:... 36 0.058
20PSN2_XENLA (O12977) Presenilin-2 (EC 3.4.23.-) (Presenilin beta)... 36 0.075
21PSN2_CHICK (Q90X07) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains:... 35 0.098
22PSN2_BRARE (Q90ZE4) Presenilin-2 (EC 3.4.23.-) (PS2) (Zf-PS2) (P... 35 0.098
23PSN_CAEEL (P52166) Presenilin sel-12 35 0.13
24HOP1_CAEEL (O02100) Presenilin hop-1 33 0.49
25VIAAT_RAT (O35458) Vesicular inhibitory amino acid transporter (... 29 7.1
26VIAAT_MOUSE (O35633) Vesicular inhibitory amino acid transporter... 29 7.1

>PSNA_ARATH (O64668) Presenilin-like protein At1g08700|
          Length = 453

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +2

Query: 437 AFWFTLLPEWTTWALLVDMAVYDLGAVLIPGG 532
           A WFT LPEWTTW +LV +A+YDL AVL PGG
Sbjct: 168 AAWFTKLPEWTTWFILVALALYDLVAVLAPGG 199



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>PSNB_ARATH (Q9SIK7) Presenilin-like protein At2g29900|
          Length = 397

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 22/32 (68%), Positives = 28/32 (87%)
 Frame = +2

Query: 437 AFWFTLLPEWTTWALLVDMAVYDLGAVLIPGG 532
           A++FTLLPEWTTW LLV +A+YD+ AVL+P G
Sbjct: 176 AYFFTLLPEWTTWVLLVALALYDIAAVLLPVG 207



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>PSN1_XENLA (O12976) Presenilin-1 (EC 3.4.23.-) (Presenilin alpha) (PS-alpha)|
          Length = 433

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWTTW +L  ++VYDL AVL P G
Sbjct: 207 LPEWTTWLILAVISVYDLVAVLSPKG 232



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>PSN1_PONPY (Q5R780) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains: Presenilin-1|
           NTF subunit; Presenilin-1 CTF subunit; Presenilin-1
           CTF12 (PS1-CTF12)]
          Length = 467

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKG 266



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>PSN1_MOUSE (P49769) Presenilin-1 (EC 3.4.23.-) (PS-1) (Protein S182)|
           [Contains: Presenilin-1 NTF subunit; Presenilin-1 CTF
           subunit; Presenilin-1 CTF12 (PS1-CTF12)]
          Length = 467

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKG 266



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>PSN1_MICMU (P79802) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains: Presenilin-1|
           NTF subunit; Presenilin-1 CTF subunit; Presenilin-1
           CTF12 (PS1-CTF12)]
          Length = 467

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKG 266



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>PSN1_MACFA (Q8HXW5) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains: Presenilin-1|
           NTF subunit; Presenilin-1 CTF subunit; Presenilin-1
           CTF12 (PS1-CTF12)]
          Length = 467

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKG 266



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>PSN1_HUMAN (P49768) Presenilin-1 (EC 3.4.23.-) (PS-1) (Protein S182)|
           [Contains: Presenilin-1 NTF subunit; Presenilin-1 CTF
           subunit; Presenilin-1 CTF12 (PS1-CTF12)]
          Length = 467

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKG 266



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>PSN1_BRARE (Q9W6T7) Presenilin-1 (EC 3.4.23.-) (PS1) (Zf-PS1)|
          Length = 456

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 230 LPEWTAWLILAAISVYDLLAVLCPKG 255



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>PSN1_BOVIN (Q9XT97) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains: Presenilin-1|
           NTF subunit; Presenilin-1 CTF subunit; Presenilin-1
           CTF12 (PS1-CTF12)]
          Length = 478

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 242 LPEWTAWLILAVISVYDLVAVLCPKG 267



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>PSN1_RAT (P97887) Presenilin-1 (EC 3.4.23.-) (PS-1) (Protein S182)|
           [Contains: Presenilin-1 NTF subunit; Presenilin-1 CTF
           subunit; Presenilin-1 CTF12 (PS1-CTF12)]
          Length = 468

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKG 266



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>PSN1_CHICK (Q4JIM4) Presenilin-1 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-1|
           NTF subunit; Presenilin-1 CTF subunit]
          Length = 468

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 242 LPEWTAWLILAVISVYDLVAVLCPKG 267



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>PSN1_CANFA (Q6RH31) Presenilin-1 (EC 3.4.23.-) (PS-1) [Contains: Presenilin-1|
           NTF subunit; Presenilin-1 CTF subunit; Presenilin-1
           CTF12 (PS1-CTF12)]
          Length = 466

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++VYDL AVL P G
Sbjct: 240 LPEWTAWLILAVISVYDLVAVLCPKG 265



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>PSN_DROME (O02194) Presenilin homolog (EC 3.4.23.-) (dPS) (DmPS)|
          Length = 541

 Score = 37.0 bits (84), Expect = 0.034
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT WA+L  ++++DL AVL P G
Sbjct: 263 LPEWTAWAVLAAISIWDLIAVLSPRG 288



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>PSN2_RAT (O88777) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2|
           NTF subunit; Presenilin-2 CTF subunit]
          Length = 448

 Score = 36.2 bits (82), Expect = 0.058
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  ++VYDL AVL P G
Sbjct: 247 LPEWSAWVILGAISVYDLVAVLCPKG 272



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>PSN2_MOUSE (Q61144) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2|
           NTF subunit; Presenilin-2 CTF subunit]
          Length = 448

 Score = 36.2 bits (82), Expect = 0.058
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  ++VYDL AVL P G
Sbjct: 247 LPEWSAWVILGAISVYDLVAVLCPKG 272



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>PSN2_HUMAN (P49810) Presenilin-2 (EC 3.4.23.-) (PS-2) (STM-2) (E5-1) (AD3LP)|
           (AD5) [Contains: Presenilin-2 NTF subunit; Presenilin-2
           CTF subunit]
          Length = 448

 Score = 36.2 bits (82), Expect = 0.058
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  ++VYDL AVL P G
Sbjct: 247 LPEWSAWVILGAISVYDLVAVLCPKG 272



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>PSN2_MICMU (P79801) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2|
           NTF subunit; Presenilin-2 CTF subunit] (Fragment)
          Length = 445

 Score = 36.2 bits (82), Expect = 0.058
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  ++VYDL AVL P G
Sbjct: 247 LPEWSAWVILGAISVYDLVAVLCPKG 272



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>PSN2_BOVIN (Q9XT96) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2|
           NTF subunit; Presenilin-2 CTF subunit]
          Length = 449

 Score = 36.2 bits (82), Expect = 0.058
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  ++VYDL AVL P G
Sbjct: 248 LPEWSAWVILGAISVYDLVAVLCPKG 273



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>PSN2_XENLA (O12977) Presenilin-2 (EC 3.4.23.-) (Presenilin beta) (PS-beta)|
          Length = 449

 Score = 35.8 bits (81), Expect = 0.075
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  ++VYDL AVL P G
Sbjct: 250 LPEWSAWVILGAISVYDLLAVLCPKG 275



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>PSN2_CHICK (Q90X07) Presenilin-2 (EC 3.4.23.-) (PS-2) [Contains: Presenilin-2|
           NTF subunit; Presenilin-2 CTF subunit]
          Length = 451

 Score = 35.4 bits (80), Expect = 0.098
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  +++YDL AVL P G
Sbjct: 253 LPEWSAWVILGAISIYDLIAVLCPKG 278



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>PSN2_BRARE (Q90ZE4) Presenilin-2 (EC 3.4.23.-) (PS2) (Zf-PS2) (Pre2)|
          Length = 441

 Score = 35.4 bits (80), Expect = 0.098
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEW+ W +L  +++YDL AVL P G
Sbjct: 246 LPEWSAWVILGAISIYDLIAVLCPKG 271



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>PSN_CAEEL (P52166) Presenilin sel-12|
          Length = 444

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 455 LPEWTTWALLVDMAVYDLGAVLIPGG 532
           LPEWT W +L  ++V+DL AVL P G
Sbjct: 210 LPEWTVWFVLFVISVWDLVAVLTPKG 235



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>HOP1_CAEEL (O02100) Presenilin hop-1|
          Length = 358

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 FWFTLLPEWTTWALLVDMAVYDLGAVLIPGG 532
           F   +LP+WT W  L  ++ +D+ AVL P G
Sbjct: 161 FILNILPDWTVWMALTAISFWDIVAVLTPCG 191



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>VIAAT_RAT (O35458) Vesicular inhibitory amino acid transporter (GABA and|
           glycine transporter) (Vesicular GABA transporter)
           (rGVAT) (Solute carrier family 32 member 1)
          Length = 525

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 532 PTGDEDGSEVVDGHVHEQRPGGPL 461
           P GDE     V+G +H QR G PL
Sbjct: 69  PCGDEGAEPPVEGDIHYQRGGAPL 92



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>VIAAT_MOUSE (O35633) Vesicular inhibitory amino acid transporter (GABA and|
           glycine transporter) (Vesicular GABA transporter)
           (mVIAAT) (mVGAT) (Solute carrier family 32 member 1)
          Length = 525

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 532 PTGDEDGSEVVDGHVHEQRPGGPL 461
           P GDE     V+G +H QR G PL
Sbjct: 69  PCGDEGAEAPVEGDIHYQRGGAPL 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,610,641
Number of Sequences: 219361
Number of extensions: 132933
Number of successful extensions: 507
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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