ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart56a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 268 bits (135), Expect = 2e-68 Identities = 177/191 (92%) Strand = Plus / Plus Query: 319 ctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcgatctcgcc 378 ||||| ||||||||||||||||||||| ||||| ||||| ||| |||||||| |||| || Sbjct: 32391 ctccttcgcgctgctcctccccaacgccgccgccgcgctggcgctcgccgcgctctcccc 32450 Query: 379 ggcctccgtccccatcgcgctccaccaggcggcgctcctcgccatcgccgtgctcaccgc 438 |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 32451 ggcctccgtccccatcgcgctccaccaggccgcgctcgtcgccatcgccgtcctcaccgc 32510 Query: 439 cttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatggccgt 498 ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| || Sbjct: 32511 cttctggttcacgctgctcccggagtggaccacctgggcgctgctcgtcgccatggcggt 32570 Query: 499 ctacgacctcg 509 ||||||||||| Sbjct: 32571 ctacgacctcg 32581 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 104 ggaggcgacgacatcgccagcgccgccgtcaccgccgtcaccttcgtcgccatcgtcacg 163 ||||| ||||||||| ||| |||| | |||||||||| |||||||||| ||||||| Sbjct: 32176 ggaggagacgacatcaccaccgccctcatcaccgccgtgaccttcgtcgtggccgtcacg 32235 Query: 164 gccgccaccttcttcatggcgctgctcttctacttccgctgcacgccctgcctccgcgcc 223 |||||||||||| || | ||| | ||||||||| |||||||||||||||||||||||||| Sbjct: 32236 gccgccaccttcctcctcgcgttcctcttctacctccgctgcacgccctgcctccgcgcc 32295 Query: 224 tacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||| ||||| || ||| ||||||| |||||||||||||| Sbjct: 32296 tacctcggcttctcctcgctctccgtcctcctcctcctcggcggcca 32342
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 268 bits (135), Expect = 2e-68 Identities = 177/191 (92%) Strand = Plus / Plus Query: 319 ctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcgatctcgcc 378 ||||| ||||||||||||||||||||| ||||| ||||| ||| |||||||| |||| || Sbjct: 22437144 ctccttcgcgctgctcctccccaacgccgccgccgcgctggcgctcgccgcgctctcccc 22437203 Query: 379 ggcctccgtccccatcgcgctccaccaggcggcgctcctcgccatcgccgtgctcaccgc 438 |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 22437204 ggcctccgtccccatcgcgctccaccaggccgcgctcgtcgccatcgccgtcctcaccgc 22437263 Query: 439 cttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatggccgt 498 ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| || Sbjct: 22437264 cttctggttcacgctgctcccggagtggaccacctgggcgctgctcgtcgccatggcggt 22437323 Query: 499 ctacgacctcg 509 ||||||||||| Sbjct: 22437324 ctacgacctcg 22437334 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 104 ggaggcgacgacatcgccagcgccgccgtcaccgccgtcaccttcgtcgccatcgtcacg 163 ||||| ||||||||| ||| |||| | |||||||||| |||||||||| ||||||| Sbjct: 22436929 ggaggagacgacatcaccaccgccctcatcaccgccgtgaccttcgtcgtggccgtcacg 22436988 Query: 164 gccgccaccttcttcatggcgctgctcttctacttccgctgcacgccctgcctccgcgcc 223 |||||||||||| || | ||| | ||||||||| |||||||||||||||||||||||||| Sbjct: 22436989 gccgccaccttcctcctcgcgttcctcttctacctccgctgcacgccctgcctccgcgcc 22437048 Query: 224 tacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||| ||||| || ||| ||||||| |||||||||||||| Sbjct: 22437049 tacctcggcttctcctcgctctccgtcctcctcctcctcggcggcca 22437095
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 268 bits (135), Expect = 2e-68 Identities = 177/191 (92%) Strand = Plus / Plus Query: 319 ctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcgatctcgcc 378 ||||| ||||||||||||||||||||| ||||| ||||| ||| |||||||| |||| || Sbjct: 22430173 ctccttcgcgctgctcctccccaacgccgccgccgcgctggcgctcgccgcgctctcccc 22430232 Query: 379 ggcctccgtccccatcgcgctccaccaggcggcgctcctcgccatcgccgtgctcaccgc 438 |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| Sbjct: 22430233 ggcctccgtccccatcgcgctccaccaggccgcgctcgtcgccatcgccgtcctcaccgc 22430292 Query: 439 cttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatggccgt 498 ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| || Sbjct: 22430293 cttctggttcacgctgctcccggagtggaccacctgggcgctgctcgtcgccatggcggt 22430352 Query: 499 ctacgacctcg 509 ||||||||||| Sbjct: 22430353 ctacgacctcg 22430363 Score = 141 bits (71), Expect = 3e-30 Identities = 143/167 (85%) Strand = Plus / Plus Query: 104 ggaggcgacgacatcgccagcgccgccgtcaccgccgtcaccttcgtcgccatcgtcacg 163 ||||| ||||||||| ||| |||| | |||||||||| |||||||||| ||||||| Sbjct: 22429958 ggaggagacgacatcaccaccgccctcatcaccgccgtgaccttcgtcgtggccgtcacg 22430017 Query: 164 gccgccaccttcttcatggcgctgctcttctacttccgctgcacgccctgcctccgcgcc 223 |||||||||||| || | ||| | ||||||||| |||||||||||||||||||||||||| Sbjct: 22430018 gccgccaccttcctcctcgcgttcctcttctacctccgctgcacgccctgcctccgcgcc 22430077 Query: 224 tacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||| ||||| || ||| ||||||| |||||||||||||| Sbjct: 22430078 tacctcggcttctcctcgctctccgtcctcctcctcctcggcggcca 22430124
>ref|NM_194693.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0020E23.10), mRNA Length = 1728 Score = 65.9 bits (33), Expect = 1e-07 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 435 ccgccttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatgg 494 ||||||||||||||||||||||||| ||||||| |||| ||||||| ||||| | ||||| Sbjct: 212 ccgccttctggttcacgctgctcccagagtggatcacc-gggcgctactcgtcgccatgg 270 Query: 495 c 495 | Sbjct: 271 c 271 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 311 gacgtcgtctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcg 370 |||| |||||||| ||||||||||||||||||| | ||||| ||||| ||| ||| |||| Sbjct: 139 gacgccgtctccttcgcgctgctcctccccaacaccgccgccgcgctggcgctcgtcgcg 198 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 212 tgcctccgcgcctacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||||||||| ||| | ||||| || ||| ||||||| |||||||||||||| Sbjct: 37 tgcctccgcgcctacatcgccttctcctcgctctccgtcctcctcctcctcggcggcca 95
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 65.9 bits (33), Expect = 1e-07 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 435 ccgccttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatgg 494 ||||||||||||||||||||||||| ||||||| |||| ||||||| ||||| | ||||| Sbjct: 1677650 ccgccttctggttcacgctgctcccagagtggatcacc-gggcgctactcgtcgccatgg 1677592 Query: 495 c 495 | Sbjct: 1677591 c 1677591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 311 gacgtcgtctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcg 370 |||| |||||||| ||||||||||||||||||| | ||||| ||||| ||| ||| |||| Sbjct: 1677723 gacgccgtctccttcgcgctgctcctccccaacaccgccgccgcgctggcgctcgtcgcg 1677664 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 212 tgcctccgcgcctacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||||||||| ||| | ||||| || ||| ||||||| |||||||||||||| Sbjct: 1677825 tgcctccgcgcctacatcgccttctcctcgctctccgtcctcctcctcctcggcggcca 1677767
>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0020E23, complete sequence Length = 151359 Score = 65.9 bits (33), Expect = 1e-07 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 435 ccgccttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatgg 494 ||||||||||||||||||||||||| ||||||| |||| ||||||| ||||| | ||||| Sbjct: 74747 ccgccttctggttcacgctgctcccagagtggatcacc-gggcgctactcgtcgccatgg 74689 Query: 495 c 495 | Sbjct: 74688 c 74688 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 311 gacgtcgtctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcg 370 |||| |||||||| ||||||||||||||||||| | ||||| ||||| ||| ||| |||| Sbjct: 74820 gacgccgtctccttcgcgctgctcctccccaacaccgccgccgcgctggcgctcgtcgcg 74761 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 212 tgcctccgcgcctacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||||||||| ||| | ||||| || ||| ||||||| |||||||||||||| Sbjct: 74922 tgcctccgcgcctacatcgccttctcctcgctctccgtcctcctcctcctcggcggcca 74864
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 65.9 bits (33), Expect = 1e-07 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 435 ccgccttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatgg 494 ||||||||||||||||||||||||| ||||||| |||| ||||||| ||||| | ||||| Sbjct: 1677650 ccgccttctggttcacgctgctcccagagtggatcacc-gggcgctactcgtcgccatgg 1677592 Query: 495 c 495 | Sbjct: 1677591 c 1677591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 311 gacgtcgtctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcg 370 |||| |||||||| ||||||||||||||||||| | ||||| ||||| ||| ||| |||| Sbjct: 1677723 gacgccgtctccttcgcgctgctcctccccaacaccgccgccgcgctggcgctcgtcgcg 1677664 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 212 tgcctccgcgcctacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||||||||| ||| | ||||| || ||| ||||||| |||||||||||||| Sbjct: 1677825 tgcctccgcgcctacatcgccttctcctcgctctccgtcctcctcctcctcggcggcca 1677767
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 65.9 bits (33), Expect = 1e-07 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 435 ccgccttctggttcacgctgctccccgagtggaccacctgggcgctgctcgtggacatgg 494 ||||||||||||||||||||||||| ||||||| |||| ||||||| ||||| | ||||| Sbjct: 1677601 ccgccttctggttcacgctgctcccagagtggatcacc-gggcgctactcgtcgccatgg 1677543 Query: 495 c 495 | Sbjct: 1677542 c 1677542 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 311 gacgtcgtctcctgcgcgctgctcctccccaacgcggccgcggcgctcgcggtcgccgcg 370 |||| |||||||| ||||||||||||||||||| | ||||| ||||| ||| ||| |||| Sbjct: 1677674 gacgccgtctccttcgcgctgctcctccccaacaccgccgccgcgctggcgctcgtcgcg 1677615 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 212 tgcctccgcgcctacctcggcctctccgcgatctggatcctcctgctcctcggcggcca 270 ||||||||||||||| ||| | ||||| || ||| ||||||| |||||||||||||| Sbjct: 1677776 tgcctccgcgcctacatcgccttctcctcgctctccgtcctcctcctcctcggcggcca 1677718
>gb|DQ471183.1| Camarops microspora isolate AFTOL-ID 1361 RNA polymerase II subunit 1 (RPB1) gene, partial sequence Length = 1184 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 123 gcgccgccgtcaccgccgtcacc 145 ||||||||||||||||||||||| Sbjct: 328 gcgccgccgtcaccgccgtcacc 306
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 118 cgccagcgccgccgtcaccgccg 140 ||||||||||||||||||||||| Sbjct: 2056312 cgccagcgccgccgtcaccgccg 2056290
>gb|BC058831.1| Homo sapiens von Hippel-Lindau tumor suppressor, transcript variant 2, mRNA (cDNA clone MGC:61974 IMAGE:6457060), complete cds Length = 2703 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 113 cctccgcgcctacctcggcctc 92
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 cgccagcgccgccgtcaccgcc 139 |||||||||||||||||||||| Sbjct: 2058724 cgccagcgccgccgtcaccgcc 2058745 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 3729437 gccgccgtcaccgccgtcacc 3729457 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 2797939 gccgccgtcaccgccgtcacc 2797959 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcaccttcgtcgcc 154 |||||||| |||||||||||| ||||||| Sbjct: 2797220 ccgccgtcgccgccgtcacctccgtcgcc 2797248 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 3729447 ccgccgtcaccgccgtcacc 3729466 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcgccgccgtcaccgccgtc 142 |||||||||||||||||||| Sbjct: 2058771 gcgccgccgtcaccgccgtc 2058790
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 253 cctgctcctcggcggccagatg 274 |||||||||||||||||||||| Sbjct: 901735 cctgctcctcggcggccagatg 901714
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 348 ccgcggcgctcgcggtcgccgc 369 |||||||||||||||||||||| Sbjct: 3328200 ccgcggcgctcgcggtcgccgc 3328221
>ref|NM_000551.2| Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA Length = 2968 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 262 cctccgcgcctacctcggcctc 241
>ref|NM_198156.1| Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 2, mRNA Length = 2845 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 262 cctccgcgcctacctcggcctc 241
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 cgccagcgccgccgtcaccgcc 139 |||||||||||||||||||||| Sbjct: 330049 cgccagcgccgccgtcaccgcc 330070 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcgccgccgtcaccgccgtc 142 |||||||||||||||||||| Sbjct: 330096 gcgccgccgtcaccgccgtc 330115
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 cgccagcgccgccgtcaccgcc 139 |||||||||||||||||||||| Sbjct: 137761 cgccagcgccgccgtcaccgcc 137782 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcgccgccgtcaccgccgtc 142 |||||||||||||||||||| Sbjct: 137808 gcgccgccgtcaccgccgtc 137827
>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14 Length = 300050 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 120 ccagcgccgccgtcaccgccgtcacc 145 |||||||||||||| ||||||||||| Sbjct: 19756 ccagcgccgccgtccccgccgtcacc 19781 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 120 ccagcgccgccgtcaccgccgtcacc 145 |||||||||||||| ||||||||||| Sbjct: 15965 ccagcgccgccgtccccgccgtcacc 15990
>gb|BC027957.1| Homo sapiens, Similar to von Hippel-Lindau syndrome, clone IMAGE:5210077, mRNA Length = 214 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 96 cctccgcgcctacctcggcctc 75
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 124 cgccgccgtcaccgccgtcacc 145 |||||||||||||||||||||| Sbjct: 3352370 cgccgccgtcaccgccgtcacc 3352391 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 gcggcgctcgcggtcgccgcg 370 ||||||||||||||||||||| Sbjct: 589797 gcggcgctcgcggtcgccgcg 589817
>gb|AY708393.1| Mycobacterium tuberculosis strain Erdman PE_PGRS 33 gene, complete cds Length = 1506 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 cgccagcgccgccgtcaccgcc 139 |||||||||||||||||||||| Sbjct: 1378 cgccagcgccgccgtcaccgcc 1357 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gcgccgccgtcaccgccgtc 142 |||||||||||||||||||| Sbjct: 1331 gcgccgccgtcaccgccgtc 1312
>gb|AC069461.2| Homo sapiens chromosome 3 clone RP11-1022P15 map 3p, complete sequence Length = 193214 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 171003 cctccgcgcctacctcggcctc 170982
>gb|AC022383.3|AC022383 Homo sapiens chromosome 3 clone RP11-415K13 map 3p, complete sequence Length = 188631 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 68066 cctccgcgcctacctcggcctc 68045
>gb|AF010238.1|AF010238 Homo sapiens von Hippel-Lindau tumor suppressor (VHL) gene, complete cds Length = 14543 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 763 cctccgcgcctacctcggcctc 742
>gb|AC018828.4| Homo sapiens chromosome 3 clone RP11-382A21 map 3p, complete sequence Length = 178230 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 92119 cctccgcgcctacctcggcctc 92098
>gb|AC022384.5| Homo sapiens chromosome 3 clone RP11-438J1 map 3p, complete sequence Length = 210053 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 21102 cctccgcgcctacctcggcctc 21081
>gb|AC034193.5| Homo sapiens chromosome 3 clone RP11-572M14 map 3p, complete sequence Length = 169013 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 22218 cctccgcgcctacctcggcctc 22239
>gb|AC018808.5| Homo sapiens chromosome 3 clone RP11-1016H17 map 3p, complete sequence Length = 207708 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 18965 cctccgcgcctacctcggcctc 18986
>gb|L15409.1|HUMHIPLIND Homo sapiens (clone g7) von Hippel-Lindau disease tumor suppressor mRNA sequence Length = 1810 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 214 cctccgcgcctacctcggcctc 235 |||||||||||||||||||||| Sbjct: 262 cctccgcgcctacctcggcctc 241
>ref|XM_475605.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2313 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgccgtcaccgccgtcaccttc 148 |||||||||| |||||||||||||| Sbjct: 1131 cgccgccgtcgccgccgtcaccttc 1155
>ref|XM_513451.1| PREDICTED: Pan troglodytes similar to Dedicator of cytokinesis protein 6 (LOC456902), mRNA Length = 2307 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tcctcctgctcctcggcggcc 269 ||||||||||||||||||||| Sbjct: 166 tcctcctgctcctcggcggcc 186
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ccttcgtcgccatcgtcacggccgc 168 ||||||||||||||||| ||||||| Sbjct: 1827175 ccttcgtcgccatcgtcgcggccgc 1827199
>ref|XM_425734.1| PREDICTED: Gallus gallus similar to putative sweet taste receptor T1R1 (LOC428176), mRNA Length = 2286 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ccagcgccgccgtcaccgccg 140 ||||||||||||||||||||| Sbjct: 2146 ccagcgccgccgtcaccgccg 2126
>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome Length = 58638 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 387 tccccatcgcgctccaccaggcggcgctc 415 |||||| ||||| |||||||||||||||| Sbjct: 26003 tccccagcgcgcgccaccaggcggcgctc 26031
>ref|XM_838471.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1389) partial mRNA Length = 1599 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ccttcgtcgccatcgtcacggccgc 168 ||||||||||||||||| ||||||| Sbjct: 1567 ccttcgtcgccatcgtcgcggccgc 1591
>ref|XM_750706.1| Aspergillus fumigatus Af293 eukaryotic translation initiation factor 3 subunit EifCd (Afu2g14670) partial mRNA Length = 1758 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tcctcctgctcctcggcggcc 269 ||||||||||||||||||||| Sbjct: 1730 tcctcctgctcctcggcggcc 1710
>gb|BC063837.1| Homo sapiens cDNA clone IMAGE:6178557, partial cds Length = 2029 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 26 gccgccgtcaccgccgtcacc 6
>gb|AF153714.1| Pseudomonas sp. BG33R strain BG33R GTP-binding protein-like protein gene, partial cds Length = 624 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 129 gccgccgtcaccgccgtcacc 109
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 269450 gccgccgtcaccgccgtcacc 269470 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 269460 ccgccgtcaccgccgtcacc 269479
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 29415 gccgccgtcaccgccgtcacc 29435 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcaccttcgtcgcc 154 |||||||| |||||||||||| ||||||| Sbjct: 28696 ccgccgtcgccgccgtcacctccgtcgcc 28724
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 247808 gccgccgtcaccgccgtcacc 247828 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 247818 ccgccgtcaccgccgtcacc 247837
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 258249 gccgccgtcaccgccgtcacc 258269 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcaccttcgtcgcc 154 |||||||| |||||||||||| ||||||| Sbjct: 257533 ccgccgtcgccgccgtcacctccgtcgcc 257561
>gb|AC103923.2| Homo sapiens chromosome 1 clone RP11-230B22, complete sequence Length = 185624 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tcctcctgctcctcggcggcc 269 ||||||||||||||||||||| Sbjct: 43675 tcctcctgctcctcggcggcc 43655
>gb|AY517644.1| Chlamydomonas reinhardtii phosphoenolpyruvate carboxylase (Ppc1) mRNA, complete cds Length = 3902 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 121 cagcgccgccgtcaccgccgtcacc 145 |||||||||||||||||||| |||| Sbjct: 3007 cagcgccgccgtcaccgccgccacc 2983
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 aacgcggccgcggcgctcgcg 361 ||||||||||||||||||||| Sbjct: 355373 aacgcggccgcggcgctcgcg 355353
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 agcgccgccgtcaccgccgtc 142 ||||||||||||||||||||| Sbjct: 10828359 agcgccgccgtcaccgccgtc 10828379 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctgcgcgctgctcctcccc 340 |||||||||||||||||||| Sbjct: 17300459 cctgcgcgctgctcctcccc 17300478 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 cgacatcgccagcgccgccgtcac 135 ||||||||||||||||| |||||| Sbjct: 17234775 cgacatcgccagcgccggcgtcac 17234798
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 cgccgccgtcaccgccgtcaccttc 148 |||||||||| |||||||||||||| Sbjct: 3276915 cgccgccgtcgccgccgtcaccttc 3276891 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcgccgccgtcaccgccgtc 142 |||||||||||||||||||| Sbjct: 13164650 gcgccgccgtcaccgccgtc 13164669
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 agcgccgccgtcaccgccgtc 142 ||||||||||||||||||||| Sbjct: 52082 agcgccgccgtcaccgccgtc 52102
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 cagcgccgccgtcaccgccgt 141 ||||||||||||||||||||| Sbjct: 5034634 cagcgccgccgtcaccgccgt 5034614 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 tcgtcgccatcgtcacggccgcca 170 |||||||||||| ||||||||||| Sbjct: 3846174 tcgtcgccatcggcacggccgcca 3846197 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 cgcggccgcggcgctcgcggtcgc 366 ||||||||||| |||||||||||| Sbjct: 3791743 cgcggccgcggtgctcgcggtcgc 3791720 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cgcggccgcggcgctcgcgg 362 |||||||||||||||||||| Sbjct: 2995264 cgcggccgcggcgctcgcgg 2995283
>dbj|AK107275.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A04, full insert sequence Length = 2661 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 cgccgccgtcaccgccgtcaccttc 148 |||||||||| |||||||||||||| Sbjct: 1226 cgccgccgtcgccgccgtcaccttc 1250
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 349 cgcggcgctcgcggtcgccgcgatc 373 ||||||||||||| ||||||||||| Sbjct: 235240 cgcggcgctcgcgatcgccgcgatc 235216 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 gcgctcctcgccatcgccgtgctc 433 ||||||||||| |||||||||||| Sbjct: 1370404 gcgctcctcgcgatcgccgtgctc 1370381
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 cgcggccgcggcgctcgcggt 363 ||||||||||||||||||||| Sbjct: 1467621 cgcggccgcggcgctcgcggt 1467641 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 406 ggcggcgctcctcgccatcgccgtgctc 433 |||| |||||||| |||||||||||||| Sbjct: 4613380 ggcgccgctcctccccatcgccgtgctc 4613353
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 tcgccatcgccgtgctcaccg 437 ||||||||||||||||||||| Sbjct: 3973701 tcgccatcgccgtgctcaccg 3973721
>gb|AC127360.3| Mus musculus BAC clone RP23-125F9 from 15, complete sequence Length = 192315 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gccgccgtcaccgccgtcacc 145 ||||||||||||||||||||| Sbjct: 86192 gccgccgtcaccgccgtcacc 86212
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 cgccgccgtcaccgccgtcaccttc 148 |||||||||| |||||||||||||| Sbjct: 70739 cgccgccgtcgccgccgtcaccttc 70715
>gb|AY118081.2| Streptomyces sp. KCTC 0041BP dihydrochalcomyin biosynthesis gene cluster, complete sequence Length = 75439 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 127 cgccgtcaccgccgtcaccttcgtcgcc 154 ||||||||||||||||||| ||||||| Sbjct: 46238 cgccgtcaccgccgtcaccgccgtcgcc 46211
>gb|DQ242507.1| Myxococcus xanthus DK 1622 PilG (pilG), PilH (pilH), PilI (pilI), PilD (pilD), PilS2 (pilS2), PilR2 (pilR2), PilM (pilM), PilN (pilN), PilO (pilO), PilP (pilP), and PilQ (pilQ) genes, complete cds; and unknown gene Length = 13124 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 tcacggccgccaccttcttcatgg 182 |||||||||||| ||||||||||| Sbjct: 8493 tcacggccgccaacttcttcatgg 8516
>ref|NM_191791.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2001 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tcgccggcctccgtccccat 393 |||||||||||||||||||| Sbjct: 20 tcgccggcctccgtccccat 1
>gb|AC112970.18| Mus musculus chromosome 17, clone RP24-443D19, complete sequence Length = 172747 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 152594 gccctgcctccgcgcctacc 152613
>gb|AY260902.1| Rhodospirillum centenum che2 gene cluster, complete sequence Length = 11332 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gacatcgccagcgccgccgt 132 |||||||||||||||||||| Sbjct: 2382 gacatcgccagcgccgccgt 2401
>ref|XM_369144.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00100.4) partial mRNA Length = 606 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cgccgccgtcaccgccgtca 143 |||||||||||||||||||| Sbjct: 279 cgccgccgtcaccgccgtca 260
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 cgcggccgcggcgctcgcggtcgccgcg 370 |||| |||||||||| |||||||||||| Sbjct: 3328521 cgcgcccgcggcgcttgcggtcgccgcg 3328548
>ref|XM_587009.2| PREDICTED: Bos taurus similar to collagen, type VIII, alpha 2 (LOC539415), mRNA Length = 2380 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 cgtgctcaccgccttctggttcac 450 ||||| |||||||||||||||||| Sbjct: 327 cgtgcccaccgccttctggttcac 304
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 1106847 ccgccgtcaccgccgtcacc 1106866
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0082F22, complete sequence Length = 176038 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gcgccgccgtcaccgccgtc 142 |||||||||||||||||||| Sbjct: 127427 gcgccgccgtcaccgccgtc 127446
>ref|XM_001000601.1| PREDICTED: Mus musculus RIKEN cDNA 2310061I04 gene (2310061I04Rik), mRNA Length = 1253 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 168 gccctgcctccgcgcctacc 187
>ref|XM_001002280.1| PREDICTED: Mus musculus RIKEN cDNA 2310061I04 gene (2310061I04Rik), mRNA Length = 1253 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 168 gccctgcctccgcgcctacc 187
>ref|XM_128627.9| PREDICTED: Mus musculus RIKEN cDNA 2310061I04 gene, transcript variant 1 (2310061I04Rik), mRNA Length = 1253 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 168 gccctgcctccgcgcctacc 187
>ref|XM_533104.2| PREDICTED: Canis familiaris similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52) (LOC475897), mRNA Length = 1650 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 33 ccgccgtcaccgccgtcacc 14
>gb|AE004327.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 235 of 251 of the complete chromosome Length = 16140 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 atcgtcacggccgccacctt 174 |||||||||||||||||||| Sbjct: 15210 atcgtcacggccgccacctt 15229
>ref|XM_541565.2| PREDICTED: Canis familiaris similar to protein 7 transactivated by hepatitis B virus X antigen (LOC484450), mRNA Length = 1441 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 cggcctccgtccccatcgcg 397 |||||||||||||||||||| Sbjct: 1393 cggcctccgtccccatcgcg 1412
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cagcgccgccgtcaccgccg 140 |||||||||||||||||||| Sbjct: 4488263 cagcgccgccgtcaccgccg 4488244
>ref|XM_795256.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC585658 (LOC585658), mRNA Length = 1323 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 362 ccgccgtcaccgccgtcacc 343
>emb|Y13383.2|BPHYPLCRD Bordetella pertussis DNA for putative pathogenicity island coding for type III secretion system and flanking house keeping genes Length = 35026 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 gcggcgctcgcggtcgccgcgatc 373 |||||| ||||||||||||||||| Sbjct: 16426 gcggcgatcgcggtcgccgcgatc 16449
>emb|X56336.1|OSRAMY3A O.sativa RAmy3A gene for alpha-amylase Length = 2625 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 cgacatcgccagcgccgccgtcac 135 ||||||||||||||||| |||||| Sbjct: 743 cgacatcgccagcgccggcgtcac 766
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cagcgccgccgtcaccgccg 140 |||||||||||||||||||| Sbjct: 2345974 cagcgccgccgtcaccgccg 2345993
>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 7/11 Length = 349943 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 116476 gccctgcctccgcgcctacc 116457
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 gcggcgctcgcggtcgccgcgatc 373 |||||| ||||||||||||||||| Sbjct: 334742 gcggcgatcgcggtcgccgcgatc 334765
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 gcggcgctcgcggtcgccgcgatc 373 |||||| ||||||||||||||||| Sbjct: 280212 gcggcgatcgcggtcgccgcgatc 280235
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 gcggcgctcgcggtcgccgcgatc 373 |||||| ||||||||||||||||| Sbjct: 293121 gcggcgatcgcggtcgccgcgatc 293098
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ccgccgtcaccttcgtcgcc 154 |||||||||||||||||||| Sbjct: 260806 ccgccgtcaccttcgtcgcc 260787
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 cggtcgccgcgatctcgccggcct 383 ||||||||||||||| |||||||| Sbjct: 25391 cggtcgccgcgatctggccggcct 25414
>ref|NM_204527.1| Gallus gallus interleukin 2 receptor, gamma (severe combined immunodeficiency) (IL2RG), mRNA Length = 1537 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 gctcctcgccatcgccgtgctcac 435 |||||||||||| ||||||||||| Sbjct: 1236 gctcctcgccatggccgtgctcac 1259
>gb|AY648960.2| Rubrivivax gelatinosus strain 1 superoxide dismutase (sodA) gene, partial cds; hypothetical protein (orf158), CtpA (ctpA), CcoS (ccoS), Cbb3-type cytochrome oxidase subunit 1 (ccoN), Cbb3-type cytochrome oxidase subunit 2 (ccoO), CcoQ (ccoQ), Cbb3-type cytochrome oxidase subunit 3 (ccoP), ferredoxin (ccoG), hypothetical protein (orf86), global transcriptional regulator (fnrL), and anaerobic coproporphyrinogen III oxidase (hemN2) genes, complete cds; and hypothetical protein gene, partial cds Length = 11731 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cgccgtcaccttcgtcgcca 155 |||||||||||||||||||| Sbjct: 1629 cgccgtcaccttcgtcgcca 1648
>gb|AY065570.1|AY065570S1 Zea mays clone tac 907.49 5' Ac insertion site sequence Length = 636 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tcctcctgctcctcggcggc 268 |||||||||||||||||||| Sbjct: 418 tcctcctgctcctcggcggc 399
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cgccgtcaccttcgtcgcca 155 |||||||||||||||||||| Sbjct: 1133 cgccgtcaccttcgtcgcca 1152
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 3636131 ccgccgtcaccgccgtcacc 3636150 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 3636122 ccgccgtcaccgccgtcacc 3636141 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 2602846 ccgccgtcaccgccgtcacc 2602827
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cgacgacatcgccagcgccg 128 |||||||||||||||||||| Sbjct: 1107931 cgacgacatcgccagcgccg 1107912
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 tcggagccgtcctcatcccc 526 |||||||||||||||||||| Sbjct: 232810 tcggagccgtcctcatcccc 232791
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ccgccgtcaccttcgtcgcc 154 |||||||||||||||||||| Sbjct: 4373548 ccgccgtcaccttcgtcgcc 4373567 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 gcggcgctcgcggtcgccgcgatc 373 ||||||||||||| |||||||||| Sbjct: 3998232 gcggcgctcgcggccgccgcgatc 3998209
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 gccgcggcgctcgcggtcgccgcg 370 ||||||||||||||| |||||||| Sbjct: 2709560 gccgcggcgctcgcgttcgccgcg 2709583
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tcgccggcctccgtccccat 393 |||||||||||||||||||| Sbjct: 29981556 tcgccggcctccgtccccat 29981537
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cgccgtcaccttcgtcgcca 155 |||||||||||||||||||| Sbjct: 405 cgccgtcaccttcgtcgcca 424
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tcgccggcctccgtccccat 393 |||||||||||||||||||| Sbjct: 126114 tcgccggcctccgtccccat 126095
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 gcggcgctcctcgccatcgc 426 |||||||||||||||||||| Sbjct: 3471291 gcggcgctcctcgccatcgc 3471272 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 acgcggccgcggcgctcgcg 361 |||||||||||||||||||| Sbjct: 2018234 acgcggccgcggcgctcgcg 2018215 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cgcggccgcggcgctcgcgg 362 |||||||||||||||||||| Sbjct: 98952 cgcggccgcggcgctcgcgg 98933
>ref|XM_231763.3| PREDICTED: Rattus norvegicus nuclear factor, erythroid derived 2, like 3 (predicted) (Nfe2l3_predicted), mRNA Length = 3024 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 tcctcctgctcctcggcggccaga 272 ||||||| |||||||||||||||| Sbjct: 1118 tcctcctcctcctcggcggccaga 1095
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 cgccgcgatctcgccggcct 383 |||||||||||||||||||| Sbjct: 1157492 cgccgcgatctcgccggcct 1157511
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ccgccgtcaccgccgtcacc 145 |||||||||||||||||||| Sbjct: 621305 ccgccgtcaccgccgtcacc 621286
>gb|AF207789.1|AF207789 Bordetella bronchiseptica outer protein B (bopB) gene, complete cds Length = 1203 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 gcggcgctcgcggtcgccgcgatc 373 |||||| ||||||||||||||||| Sbjct: 826 gcggcgatcgcggtcgccgcgatc 849
>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710H01 Length = 187107 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 gccgcggcgctcgcggtcgccgcg 370 ||||||||||||||| |||||||| Sbjct: 164901 gccgcggcgctcgcgttcgccgcg 164924
>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529C07 Length = 174011 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 gccgcggcgctcgcggtcgccgcg 370 ||||||||||||||| |||||||| Sbjct: 121307 gccgcggcgctcgcgttcgccgcg 121330
>dbj|AP005891.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1045B05 Length = 140992 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctgcgcgctgctcctcccc 340 |||||||||||||||||||| Sbjct: 87331 cctgcgcgctgctcctcccc 87350 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 cgacatcgccagcgccgccgtcac 135 ||||||||||||||||| |||||| Sbjct: 21647 cgacatcgccagcgccggcgtcac 21670
>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0054F02 Length = 180651 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctgcgcgctgctcctcccc 340 |||||||||||||||||||| Sbjct: 24372 cctgcgcgctgctcctcccc 24391
>gb|AE005095.1| Halobacterium sp. NRC-1 section 126 of 170 of the complete genome Length = 9920 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 113 gacatcgccagcgccgccgtcaccgccg 140 |||| |||||||||||||| |||||||| Sbjct: 9394 gacaccgccagcgccgccgacaccgccg 9421
>emb|AJ419898.1|GGA419898 Gallus gallus gene for putative common cytokine receptor gamma chain a Length = 2908 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 gctcctcgccatcgccgtgctcac 435 |||||||||||| ||||||||||| Sbjct: 2607 gctcctcgccatggccgtgctcac 2630
>emb|AJ419897.1|GGA419897 Gallus gallus mRNA for putative common cytokine receptor gamma chain a Length = 1459 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 gctcctcgccatcgccgtgctcac 435 |||||||||||| ||||||||||| Sbjct: 1158 gctcctcgccatggccgtgctcac 1181
>emb|AJ419896.1|GGA419896 Gallus gallus mRNA for putative common cytokine receptor gamma chain b Length = 1537 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 gctcctcgccatcgccgtgctcac 435 |||||||||||| ||||||||||| Sbjct: 1236 gctcctcgccatggccgtgctcac 1259
>dbj|AK121195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M22, full insert sequence Length = 2808 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tcgccggcctccgtccccat 393 |||||||||||||||||||| Sbjct: 390 tcgccggcctccgtccccat 371
>ref|XM_306113.2| Anopheles gambiae str. PEST ENSANGP00000015546 (ENSANGG00000013057), partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 caccgccgtcaccttcgtcg 152 |||||||||||||||||||| Sbjct: 897 caccgccgtcaccttcgtcg 916
>dbj|AK099392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075P18, full insert sequence Length = 1582 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 cgacatcgccagcgccgccgtcac 135 ||||||||||||||||| |||||| Sbjct: 305 cgacatcgccagcgccggcgtcac 328
>dbj|AK099330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011L07, full insert sequence Length = 1586 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 cgacatcgccagcgccgccgtcac 135 ||||||||||||||||| |||||| Sbjct: 309 cgacatcgccagcgccggcgtcac 332
>ref|NM_211479.1| Eremothecium gossypii AGL250Wp (AGL250W), mRNA Length = 2190 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 tcggagccgtcctcatcccc 526 |||||||||||||||||||| Sbjct: 731 tcggagccgtcctcatcccc 712
>dbj|AK063988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D12, full insert sequence Length = 1636 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 cgacatcgccagcgccgccgtcac 135 ||||||||||||||||| |||||| Sbjct: 308 cgacatcgccagcgccggcgtcac 331
>gb|AY107565.1| Zea mays PCO081097 mRNA sequence Length = 916 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 211 ctgcctccgcgcctacctcggcctctcc 238 |||||||||||||||| |||||||||| Sbjct: 237 ctgcctccgcgcctacaacggcctctcc 264
>gb|BC088194.1| Rattus norvegicus hypothetical protein MGC:15854, mRNA (cDNA clone MGC:108866 IMAGE:7373688), complete cds Length = 1202 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 109 gccctgcctccgcgcctacc 128
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 cgccttctggttcacgctgc 455 |||||||||||||||||||| Sbjct: 1255772 cgccttctggttcacgctgc 1255753
>emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene cluster, strain DSM 40063 Length = 50466 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ccgcgatctcgccggcctcc 385 |||||||||||||||||||| Sbjct: 46705 ccgcgatctcgccggcctcc 46686
>ref|NM_213610.1| Rattus norvegicus hypothetical protein MGC:15854 (RGD1302996), mRNA Length = 2306 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 124 gccctgcctccgcgcctacc 143
>emb|CR974451.9| Mouse DNA sequence from clone RP24-180B11 on chromosome 17, complete sequence Length = 188873 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gccctgcctccgcgcctacc 227 |||||||||||||||||||| Sbjct: 121619 gccctgcctccgcgcctacc 121600
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tccaccaggcggcgctcctc 418 |||||||||||||||||||| Sbjct: 1610104 tccaccaggcggcgctcctc 1610085
>dbj|D14499.1|STMHSP70 S.griseus hsp70 gene for HSP70, complete cds Length = 2113 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ccgcgatctcgccggcctcc 385 |||||||||||||||||||| Sbjct: 534 ccgcgatctcgccggcctcc 515
>dbj|AB006976.1| Rhodospirillum rubrum gene for aldehyde dehydrogenase, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 cgacgacatcgccagcgccg 128 |||||||||||||||||||| Sbjct: 816 cgacgacatcgccagcgccg 835 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,877,685 Number of Sequences: 3902068 Number of extensions: 2877685 Number of successful extensions: 89166 Number of sequences better than 10.0: 123 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83051 Number of HSP's gapped (non-prelim): 6115 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
