ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K1279_HUMAN (Q96EK5) Protein KIAA1279 32 1.6
2GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GA... 31 2.7

>K1279_HUMAN (Q96EK5) Protein KIAA1279|
          Length = 621

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
 Frame = -1

Query: 260 RKPYDCSHSSAAAVAGEEELRRMAAEDRGDARMEEDG------VAGMPSEMRRP*AATAR 99
           ++PY   +S+ A +   + L   A ED  +    EDG        G+P+E+  P    A+
Sbjct: 30  KEPYKSKYSARALLEEVKALLGPAPEDEDERPEAEDGPGAGDHALGLPAEVVEPEGPVAQ 89

Query: 98  REMRKGTSGKERRCRRIAIATEEVGAGRRALV 3
           R +R      E       I TEE+ AG   LV
Sbjct: 90  RAVRLAVI--EFHLGVNHIDTEELSAGEEHLV 119



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>GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GABAB-related|
           G-protein coupled receptor) (G-protein coupled receptor
           PGR28)
          Length = 814

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +3

Query: 258 PSVHHHRVRKHVPGAHLRLPHVQGGHVP 341
           PS   HR  + VPGAH RL HVQ G  P
Sbjct: 617 PSSVGHRANRTVPGAHSRL-HVQNGDSP 643


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,958,187
Number of Sequences: 219361
Number of extensions: 741569
Number of successful extensions: 2879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2875
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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