Clone Name | bart55h11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | IAA13_ORYSA (Q7Y1Y5) Auxin-responsive protein IAA13 (Indoleaceti... | 44 | 3e-04 | 2 | VP3_ARMV (P24820) P3 protein | 32 | 1.6 | 3 | PA2C_PSEAU (P20256) Phospholipase A2 isozyme PA-12C (EC 3.1.1.4)... | 30 | 4.6 | 4 | B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.... | 30 | 6.0 | 5 | GLYA2_RHILO (Q98A81) Serine hydroxymethyltransferase 2 (EC 2.1.2... | 29 | 7.9 |
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>IAA13_ORYSA (Q7Y1Y5) Auxin-responsive protein IAA13 (Indoleacetic acid-induced| protein 13) Length = 236 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +1 Query: 313 MAGADVDVGTXXXXXX----XXXXXXXXXXXXXXYEDTIDLKLTLPTGGMQEDSAG 468 MAGADVDVGT +E+TIDLKL LPT GM+E +AG Sbjct: 1 MAGADVDVGTELRLGLPGGGGGAAEAAAKAAKRGFEETIDLKLKLPTAGMEEAAAG 56
>VP3_ARMV (P24820) P3 protein| Length = 360 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 465 GGVFLHAAGGQRQLQ-VNGVLIAPLPGLGRLGAASRQPEPELRPDVDIG 322 GG +HA+ GQ+Q ++ +L P R+GA S+ P+ + PD G Sbjct: 125 GGHCVHASKGQKQATYLSSLLSNPSGAKSRMGAVSKPPQTKNAPDASKG 173
>PA2C_PSEAU (P20256) Phospholipase A2 isozyme PA-12C (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 118 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -2 Query: 547 WEQVASRGQRPRPLPASWPCRLPAPACRRSLPACRRWAASASS 419 +EQ +G P+ SW C AP C S P C+R+ + + Sbjct: 52 YEQAGKKGCFPKLTLYSWKCTGNAPTC-NSKPGCKRFVCACDA 93
>B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,4-GalTase 1) (Beta4Gal-T1) (b4Gal-T1) (UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 1) (UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 1) [Includes: L Length = 397 Score = 29.6 bits (65), Expect = 6.0 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = -3 Query: 549 LGSRWLLGVSGRGLCRPLGLVGCRLRLAGGVFLHAAGGQRQLQVNGVLIAPLPGLGRLGA 370 LG + ++GR L R LVG L GG AA GQ ++ P P LG Sbjct: 33 LGVTLVYYLAGRDLSRLPQLVGVSTPLQGGSNSAAAIGQSSGELRTGGARPPPPLG---- 88 Query: 369 ASRQPEP--ELRPDVDIG 322 AS QP P + P VD G Sbjct: 89 ASSQPRPGGDSSPVVDSG 106
>GLYA2_RHILO (Q98A81) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 437 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -3 Query: 459 VFLHAAGGQRQLQVNGVLIAPLPGLGRLGAASRQPEPELRPDVDIGASHR 310 VF +AA + L+ N L+A + + L A P P + DV SH+ Sbjct: 185 VFDYAAMAEIALEANSYLVADIAHISGLIVAGAHPNPVVHCDVVTSTSHK 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,398,871 Number of Sequences: 219361 Number of extensions: 793015 Number of successful extensions: 2642 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2472 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2633 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)