ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IAA13_ORYSA (Q7Y1Y5) Auxin-responsive protein IAA13 (Indoleaceti... 44 3e-04
2VP3_ARMV (P24820) P3 protein 32 1.6
3PA2C_PSEAU (P20256) Phospholipase A2 isozyme PA-12C (EC 3.1.1.4)... 30 4.6
4B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.... 30 6.0
5GLYA2_RHILO (Q98A81) Serine hydroxymethyltransferase 2 (EC 2.1.2... 29 7.9

>IAA13_ORYSA (Q7Y1Y5) Auxin-responsive protein IAA13 (Indoleacetic acid-induced|
           protein 13)
          Length = 236

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 313 MAGADVDVGTXXXXXX----XXXXXXXXXXXXXXYEDTIDLKLTLPTGGMQEDSAG 468
           MAGADVDVGT                        +E+TIDLKL LPT GM+E +AG
Sbjct: 1   MAGADVDVGTELRLGLPGGGGGAAEAAAKAAKRGFEETIDLKLKLPTAGMEEAAAG 56



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>VP3_ARMV (P24820) P3 protein|
          Length = 360

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 465 GGVFLHAAGGQRQLQ-VNGVLIAPLPGLGRLGAASRQPEPELRPDVDIG 322
           GG  +HA+ GQ+Q   ++ +L  P     R+GA S+ P+ +  PD   G
Sbjct: 125 GGHCVHASKGQKQATYLSSLLSNPSGAKSRMGAVSKPPQTKNAPDASKG 173



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>PA2C_PSEAU (P20256) Phospholipase A2 isozyme PA-12C (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 118

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 547 WEQVASRGQRPRPLPASWPCRLPAPACRRSLPACRRWAASASS 419
           +EQ   +G  P+    SW C   AP C  S P C+R+  +  +
Sbjct: 52  YEQAGKKGCFPKLTLYSWKCTGNAPTC-NSKPGCKRFVCACDA 93



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>B4GT1_HUMAN (P15291) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 1) (Beta4Gal-T1) (b4Gal-T1)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 1) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 1) [Includes: L
          Length = 397

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -3

Query: 549 LGSRWLLGVSGRGLCRPLGLVGCRLRLAGGVFLHAAGGQRQLQVNGVLIAPLPGLGRLGA 370
           LG   +  ++GR L R   LVG    L GG    AA GQ   ++      P P LG    
Sbjct: 33  LGVTLVYYLAGRDLSRLPQLVGVSTPLQGGSNSAAAIGQSSGELRTGGARPPPPLG---- 88

Query: 369 ASRQPEP--ELRPDVDIG 322
           AS QP P  +  P VD G
Sbjct: 89  ASSQPRPGGDSSPVVDSG 106



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>GLYA2_RHILO (Q98A81) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine|
           methylase 2) (SHMT 2)
          Length = 437

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 459 VFLHAAGGQRQLQVNGVLIAPLPGLGRLGAASRQPEPELRPDVDIGASHR 310
           VF +AA  +  L+ N  L+A +  +  L  A   P P +  DV    SH+
Sbjct: 185 VFDYAAMAEIALEANSYLVADIAHISGLIVAGAHPNPVVHCDVVTSTSHK 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,398,871
Number of Sequences: 219361
Number of extensions: 793015
Number of successful extensions: 2642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2633
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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