ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart55h08 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 158 bits (399), Expect = 1e-38 Identities = 81/153 (52%), Positives = 105/153 (68%), Gaps = 1/153 (0%) Frame = +2 Query: 104 VNKLVTILSIDGGGVRGIIPATILAFLEKELQKLDG-ADARIADYFDVIAGTSTGGLLTV 280 + ++VT+LSIDGGG++GIIPATIL FLE +LQ++D DAR+ADYFDVI GTSTGGLLT Sbjct: 25 LGEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTA 84 Query: 281 MLAAPNKDGKPLFNAENLAQFYINESPKIFPQKDSIFSKIGTALGMVTGPKYNGKYLQSL 460 M+ PN+ +P A+++ FY PKIF SIF GPKY+GKYL + Sbjct: 85 MITTPNETNRPFAAAKDIVPFYFEHGPKIFQSSGSIF-----------GPKYDGKYLMQV 133 Query: 461 LRERLGETRLDGALTSLVIPTFDIAHLXPTIFS 559 L+E+LGETR+ ALT + I +FDI P IF+ Sbjct: 134 LQEKLGETRVHQALTEVAISSFDIKTNKPVIFT 166
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 153 bits (386), Expect = 4e-37 Identities = 79/154 (51%), Positives = 105/154 (68%), Gaps = 1/154 (0%) Frame = +2 Query: 101 KVNKLVTILSIDGGGVRGIIPATILAFLEKELQKLDG-ADARIADYFDVIAGTSTGGLLT 277 K+ ++VT+LSIDGGG++GIIPA IL FLE +LQ++D DAR+ADYFDVI GTSTGGLLT Sbjct: 15 KLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLT 74 Query: 278 VMLAAPNKDGKPLFNAENLAQFYINESPKIFPQKDSIFSKIGTALGMVTGPKYNGKYLQS 457 M+ PN++ +P A+++ FY P IF SIF GP+Y+GKYL Sbjct: 75 AMITTPNENNRPFAAAKDIVPFYFEHGPHIFNYSGSIF-----------GPRYDGKYLLQ 123 Query: 458 LLRERLGETRLDGALTSLVIPTFDIAHLXPTIFS 559 +L+E+LGETR+ ALT + I +FDI P IF+ Sbjct: 124 VLQEKLGETRVHQALTEVAISSFDIKTNKPVIFT 157
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 151 bits (381), Expect = 1e-36 Identities = 78/153 (50%), Positives = 104/153 (67%), Gaps = 1/153 (0%) Frame = +2 Query: 104 VNKLVTILSIDGGGVRGIIPATILAFLEKELQKLDG-ADARIADYFDVIAGTSTGGLLTV 280 + ++VT+LSIDGGG++GIIPA IL FLE +LQ++D DAR+ADYFDVI GTSTGGLLT Sbjct: 25 LGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTA 84 Query: 281 MLAAPNKDGKPLFNAENLAQFYINESPKIFPQKDSIFSKIGTALGMVTGPKYNGKYLQSL 460 M+ PN++ +P A+++ FY P IF SIF GP+Y+GKYL + Sbjct: 85 MITTPNENNRPFAAAKDIVPFYFEHGPHIFNYSGSIF-----------GPRYDGKYLLQV 133 Query: 461 LRERLGETRLDGALTSLVIPTFDIAHLXPTIFS 559 L+E+LGETR+ ALT + I +FDI P IF+ Sbjct: 134 LQEKLGETRVHQALTEVAISSFDIKTNKPVIFT 166
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 149 bits (377), Expect = 4e-36 Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Frame = +2 Query: 101 KVNKLVTILSIDGGGVRGIIPATILAFLEKELQKLDG-ADARIADYFDVIAGTSTGGLLT 277 K+ ++VT+LSIDGGG++GIIPA IL FLE +LQ++D DAR+ADYFDVI GTSTGGLLT Sbjct: 24 KLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLT 83 Query: 278 VMLAAPNKDGKPLFNAENLAQFYINESPKIFPQKDSIFSKIGTALGMVTGPKYNGKYLQS 457 M+ PN++ +P A+++ FY P IF G + GP Y+GKYL Sbjct: 84 AMITTPNENNRPFAAAKDIVPFYFEHGPHIFNYS-----------GSIIGPMYDGKYLLQ 132 Query: 458 LLRERLGETRLDGALTSLVIPTFDIAHLXPTIFS 559 +L+E+LGETR+ ALT + I +FDI P IF+ Sbjct: 133 VLQEKLGETRVHQALTEVAISSFDIKTNKPVIFT 166
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 149 bits (377), Expect = 4e-36 Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Frame = +2 Query: 101 KVNKLVTILSIDGGGVRGIIPATILAFLEKELQKLDG-ADARIADYFDVIAGTSTGGLLT 277 K+ ++VT+LSIDGGG++GIIPA IL FLE +LQ++D DAR+ADYFDVI GTSTGGLLT Sbjct: 24 KLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLT 83 Query: 278 VMLAAPNKDGKPLFNAENLAQFYINESPKIFPQKDSIFSKIGTALGMVTGPKYNGKYLQS 457 M+ PN++ +P A+++ FY P IF G + GP Y+GKYL Sbjct: 84 AMITTPNENNRPFAAAKDIVPFYFEHGPHIFNYS-----------GSILGPMYDGKYLLQ 132 Query: 458 LLRERLGETRLDGALTSLVIPTFDIAHLXPTIFS 559 +L+E+LGETR+ ALT + I +FDI P IF+ Sbjct: 133 VLQEKLGETRVHQALTEVAISSFDIKTNKPVIFT 166
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/55 (40%), Positives = 33/55 (60%) Frame = +2 Query: 122 ILSIDGGGVRGIIPATILAFLEKELQKLDGADARIADYFDVIAGTSTGGLLTVML 286 +L +DGGGV+G+I +L +EK + D FD +AGTSTGG+L + + Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILALAI 528
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/55 (38%), Positives = 33/55 (60%) Frame = +2 Query: 122 ILSIDGGGVRGIIPATILAFLEKELQKLDGADARIADYFDVIAGTSTGGLLTVML 286 +L +DGGGV+G++ +L +EK + D FD +AGTSTGG+L + + Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILALAI 474
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/55 (38%), Positives = 33/55 (60%) Frame = +2 Query: 122 ILSIDGGGVRGIIPATILAFLEKELQKLDGADARIADYFDVIAGTSTGGLLTVML 286 +L +DGGGV+G++ +L +EK + D FD +AGTSTGG+L + + Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILALAI 473
>FLID_HELPJ (Q9ZL91) Flagellar hook-associated protein 2 (HAP2) (Filament cap| protein) (Flagellar cap protein) Length = 684 Score = 35.4 bits (80), Expect = 0.11 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Frame = +2 Query: 194 LQKLDGADARIADYFDVIAGTS--TGGLLTVMLAA--PNKDGKPLFNAENLAQFYINESP 361 L L G ++DY I+ S TG L+ + A P +D K + +NLAQ INE Sbjct: 56 LSSLKGPVKTLSDYSTYISRKSNVTGDALSASVGAGVPIQDIK--VDVQNLAQGDINELG 113 Query: 362 KIFPQKDSIFSKIGTALGMVTGPK 433 F +D IFS++ T L T K Sbjct: 114 AKFSSRDDIFSQVDTTLKFYTQNK 137
>FLID_HELPY (P96786) Flagellar hook-associated protein 2 (HAP2) (Filament cap| protein) (Flagellar cap protein) Length = 684 Score = 34.3 bits (77), Expect = 0.25 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Frame = +2 Query: 194 LQKLDGADARIADYFDVIAGTS--TGGLLT--VMLAAPNKDGKPLFNAENLAQFYINESP 361 L L G ++DY I+ S TG L+ V + P +D K + +NLAQ INE Sbjct: 56 LSALKGPVKTLSDYSTYISRKSNVTGDALSASVGVGVPIQDIK--VDVQNLAQGDINELG 113 Query: 362 KIFPQKDSIFSKIGTALGMVTGPK 433 F +D IFS++ T L T K Sbjct: 114 AKFSSRDDIFSQVDTTLKFYTQNK 137
>GCSP_HUMAN (P23378) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1020 Score = 33.5 bits (75), Expect = 0.43 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = -1 Query: 377 SVGRSWATR*CRTVPDSRR*TAASHPCWAPRASPS 273 S R+W R R V RR S PCWAPR+ S Sbjct: 3 SCARAWGLRLGRGVGGGRRLAGGSGPCWAPRSRDS 37
>BEM46_SCHPO (P54069) Protein bem46| Length = 299 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +2 Query: 242 VIAGTSTGGLLTVMLAAPNKDGKPLFNAENLAQFYINESPKIFPQKDSIFSKIGTAL 412 V+ G S GG + + L A N+D EN + P +FP SI S+ T + Sbjct: 163 VVYGQSIGGAVAIALTAKNQDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEI 219
>E13F_TOBAC (P27666) Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform| GLB precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase, basic) (Glucanase GLB) Length = 370 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 263 GGLLTVMLAAPNKDGKPLFNAENLAQFYINESPKIF-PQKDSIFSKIGTALGMVTGPKYN 439 G + VML PN D K + + A++++ ++ K F P + +G + VTG Y Sbjct: 79 GSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYL 138 Query: 440 GKYL 451 +L Sbjct: 139 TSFL 142
>E13E_TOBAC (P23546) Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform| GGIB50 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase, basic) (Glucanase GLA) Length = 370 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 263 GGLLTVMLAAPNKDGKPLFNAENLAQFYINESPKIF-PQKDSIFSKIGTALGMVTGPKYN 439 G + VML PN D K + + A++++ ++ K F P + +G + VTG Y Sbjct: 79 GSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYL 138 Query: 440 GKYL 451 +L Sbjct: 139 TSFL 142
>E13B_TOBAC (P15797) Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform| precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase, basic) Length = 371 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 263 GGLLTVMLAAPNKDGKPLFNAENLAQFYINESPKIF-PQKDSIFSKIGTALGMVTGPKYN 439 G + VML PN D K + + A++++ ++ K F P + +G + VTG Y Sbjct: 80 GSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYL 139 Query: 440 GKYL 451 +L Sbjct: 140 TSFL 143
>MURD_GLUOX (Q5FUJ7) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 448 Score = 30.8 bits (68), Expect = 2.8 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 532 DVEGWDDQAGEGPVQPRLAEALTEQRLEVLAIVLGPG 422 +V+ WDD+ + P QP L A + A++L PG Sbjct: 36 EVQAWDDRNADLPAQPNLTVAPLTDLSGMTALILSPG 72
>E13B_NICPL (P23431) Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform| precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase, basic) Length = 365 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 263 GGLLTVMLAAPNKDGKPLFNAENLAQFYINESPKIF-PQKDSIFSKIGTALGMVTGPKYN 439 G + VML PN D K + + A++++ ++ K F P + +G + VTG Y Sbjct: 79 GSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYL 138 Query: 440 GKYL 451 +L Sbjct: 139 TSFL 142
>RPOB_COREF (Q8FS97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1171 Score = 30.0 bits (66), Expect = 4.8 Identities = 21/75 (28%), Positives = 31/75 (41%) Frame = +2 Query: 164 ATILAFLEKELQKLDGADARIADYFDVIAGTSTGGLLTVMLAAPNKDGKPLFNAENLAQF 343 A ++ L KEL + FD + GLL + PN+DG + NA+ A Sbjct: 948 AELIKTLPKELYDVPAGSLTATPVFDGASNEELAGLLAN--SRPNRDGDVMVNADGKATL 1005 Query: 344 YINESPKIFPQKDSI 388 S + +P SI Sbjct: 1006 IDGRSGEPYPYPVSI 1020
>REQUA_XENLA (Q9W638) Zinc-finger protein ubi-d4 A (Requiem A) (xReq A)| (Apoptosis response zinc finger protein A) Length = 388 Score = 29.6 bits (65), Expect = 6.2 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 121 HPEHRWRRRERDHPGHHPRL 180 +P RWR++ R HP PRL Sbjct: 71 YPSRRWRKKRRAHPPEDPRL 90
>REQUB_XENLA (Q9W636) Zinc-finger protein ubi-d4 B (Requiem B) (xReq B)| (Apoptosis response zinc finger protein B) (Fragment) Length = 366 Score = 29.6 bits (65), Expect = 6.2 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 121 HPEHRWRRRERDHPGHHPRL 180 +P RWR++ R HP PRL Sbjct: 50 YPSRRWRKKRRAHPPEDPRL 69
>NCPR_CANMA (P50126) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)| (P450R) Length = 680 Score = 29.6 bits (65), Expect = 6.2 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 5/109 (4%) Frame = +2 Query: 182 LEKELQKLDGADARIADYFDVI---AGTSTGGLLTVMLAAPNKDGKPLFNAENLAQFYIN 352 L +E+ G +AD+ D G +L + A +G+P NA+ + + Sbjct: 78 LSREIHSRFGLKTMVADFADYDWDNFGDIPNDILVFFIVATYGEGEPTDNADEFHTWLTD 137 Query: 353 ESPKIFPQKDSIFSKIGTALGMVTGPKYN--GKYLQSLLRERLGETRLD 493 E+ + + ++F LG T YN G+ LL E+ GE D Sbjct: 138 EADTLSTLRYTVF-----GLGNSTYEFYNAIGRKFDRLLEEKGGERFAD 181
>EMF2_ARATH (Q8L6Y4) Polycomb protein EMBRYONIC FLOWER 2| Length = 631 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -1 Query: 467 HGAAIGGTCHCTWARSPSPELCRSWRKW-NLSVGR 366 H IGG HC W++ P L SW+K N+ +G+ Sbjct: 188 HSGNIGG--HCLWSKIPLQSLYASWQKSPNMDLGQ 220
>REQU_MOUSE (Q61103) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response| zinc finger protein) (D4, zinc and double PHD fingers family 2) Length = 391 Score = 29.3 bits (64), Expect = 8.1 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 121 HPEHRWRRRERDHPGHHPRL 180 +P RWR++ R HP PRL Sbjct: 74 YPARRWRKKRRAHPPEDPRL 93
>REQU_HUMAN (Q92785) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response| zinc finger protein) (D4, zinc and double PHD fingers family 2) Length = 391 Score = 29.3 bits (64), Expect = 8.1 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 121 HPEHRWRRRERDHPGHHPRL 180 +P RWR++ R HP PRL Sbjct: 74 YPARRWRKKRRAHPPEDPRL 93
>DRL26_ARATH (Q84WD3) Probable disease resistance protein At4g19060| Length = 383 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +2 Query: 311 PLFNAENLAQFYINESPKIFPQK------DSIFSKIGTALGMVTGPKYNGKYLQSLLRER 472 P +AE+L + YI+ P D++ + G A+ P+Y G+Y Q L+ + Sbjct: 294 PRSDAESLWEIYIDAVPTKVDDAAATNLGDAVATNAGDAVAPKVNPRYPGRYKQELMDKS 353 Query: 473 LG 478 G Sbjct: 354 CG 355
>REQU_CHICK (P58268) Zinc-finger protein ubi-d4 (Requiem) (Apoptosis response| zinc finger protein) Length = 405 Score = 29.3 bits (64), Expect = 8.1 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 121 HPEHRWRRRERDHPGHHPRL 180 +P RWR++ R HP PRL Sbjct: 74 YPARRWRKKRRAHPPEDPRL 93
>RPA3_YEAST (Q01080) DNA-directed RNA polymerase I 49 kDa polypeptide (EC| 2.7.7.6) (A49) Length = 415 Score = 29.3 bits (64), Expect = 8.1 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Frame = +2 Query: 185 EKELQKLDGADARIADYFDVIAGTSTGGLLTVMLAAPNKDGKPLFNAENLAQFYINES-- 358 EK+ L G + R+ + + V L P K L+ A L +++S Sbjct: 47 EKDEFVLHGENERLEYEGYTDSSSQASNQYVVGLFNPEKKSIQLYKAPVLVSKVVSKSSK 106 Query: 359 ----PKIFPQKDSIFSKIGTALGMVTGPKYNGKYLQSLLRERLGETRLDGALTSLV 514 PKI + D+ S + ALG G K K + L R R+ +L + +V Sbjct: 107 NLRGPKIKSKSDTRPSALRNALGEAFGTKKAKKAIADLERNRIDSDKLTDSAIDIV 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,802,275 Number of Sequences: 219361 Number of extensions: 1633326 Number of successful extensions: 5524 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5359 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5511 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
