ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart55h03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 101 bits (51), Expect = 2e-18 Identities = 232/288 (80%), Gaps = 7/288 (2%) Strand = Plus / Plus Query: 114 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 173 ||||||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||| Sbjct: 73 gatggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggc 132 Query: 174 acgagggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 233 || ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 133 acaagggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 192 Query: 234 gtcgagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcg 293 || ||||||| | || ||| |||||| |||| | ||| ||||||| ||||||||| Sbjct: 193 atctcgtccggg-caga--agcagggcga---catgctgctgacggtgccagagggcgcg 246 Query: 294 cacgccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggc 353 ||||||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 247 cacgccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggc 306 Query: 354 gcctgctactccgtcaccttcaacgccgcgcgccacctgcggccagtc 401 | ||||||| |||| |||| ||||||||| |||||||| |||||| Sbjct: 307 atgtactactccatcacattcagcgccgcgcg-cacctgcgcccagtc 353
>dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence Length = 1499 Score = 101 bits (51), Expect = 2e-18 Identities = 232/288 (80%), Gaps = 7/288 (2%) Strand = Plus / Plus Query: 114 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 173 ||||||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||| Sbjct: 204 gatggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggc 263 Query: 174 acgagggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 233 || ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 264 acaagggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 323 Query: 234 gtcgagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcg 293 || ||||||| | || ||| |||||| |||| | ||| ||||||| ||||||||| Sbjct: 324 atctcgtccggg-caga--agcagggcga---catgctgctgacggtgccagagggcgcg 377 Query: 294 cacgccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggc 353 ||||||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 378 cacgccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggc 437 Query: 354 gcctgctactccgtcaccttcaacgccgcgcgccacctgcggccagtc 401 | ||||||| |||| |||| ||||||||| |||||||| |||||| Sbjct: 438 atgtactactccatcacattcagcgccgcgcg-cacctgcgcccagtc 484
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 95.6 bits (48), Expect = 1e-16 Identities = 229/285 (80%), Gaps = 7/285 (2%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||||| Sbjct: 24702564 ggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggcaca 24702623 Query: 177 agggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtacgtc 236 ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| || Sbjct: 24702624 agggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtacatc 24702683 Query: 237 gagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcgcac 296 ||||||| | || ||| |||||| |||| | ||| ||||||| |||||||||||| Sbjct: 24702684 tcgtccggg-caga--agcagggcga---catgctgctgacggtgccagagggcgcgcac 24702737 Query: 297 gccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggcgcc 356 |||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 24702738 gccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggcatg 24702797 Query: 357 tgctactccgtcaccttcaacgccgcgcgccacctgcggccagtc 401 | ||||||| |||| |||| ||||||||| |||||||| |||||| Sbjct: 24702798 tactactccatcacattcagcgccgcgcg-cacctgcgcccagtc 24702841 Score = 73.8 bits (37), Expect = 4e-10 Identities = 116/141 (82%), Gaps = 1/141 (0%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 24720449 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 24720508 Query: 326 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcg 385 || ||||| ||||| ||| || || || ||||||||||||||||| ||| ||||| Sbjct: 24720509 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 24720568 Query: 386 ccacctgcggccagtcggagc 406 |||||||| |||||| |||| Sbjct: 24720569 -cacctgcgcccagtccgagc 24720588 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||| ||||||||||||||||| ||||||||||||| |||| || ||| || | Sbjct: 24727302 catgatcctggcggtgccggagggcgcgtacgccgtgcgcctgggcaacgacgcaaccat 24727361 Query: 326 ccggcagcagctcagcctcacccg 349 |||||||| | ||||| ||||||| Sbjct: 24727362 ccggcagcggatcagcgtcacccg 24727385 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| ||||| ||| |||||||||||| | |||| ||| ||||||||||||||||||| Sbjct: 24716590 ggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggcacg 24716649 Query: 177 agggtgacggg 187 ||||||||||| Sbjct: 24716650 agggtgacggg 24716660 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 24716733 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 24716792 Query: 326 ccggcagc 333 || ||||| Sbjct: 24716793 ccagcagc 24716800 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcg 304 |||| ||||| |||||||||||||||||| ||||||||| Sbjct: 24722654 catgatcctggcggtgccggagggcgcgcgcgccgtgcg 24722692 Score = 46.1 bits (23), Expect = 0.088 Identities = 56/67 (83%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 24720306 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 24720365 Query: 177 agggtga 183 ||||||| Sbjct: 24720366 agggtga 24720372 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 290 cgcgcacgccgtgcgcctcggc 311 |||||||||||||||||||||| Sbjct: 4612817 cgcgcacgccgtgcgcctcggc 4612796
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 95.6 bits (48), Expect = 1e-16 Identities = 229/285 (80%), Gaps = 7/285 (2%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||||| Sbjct: 92087 ggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggcaca 92146 Query: 177 agggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtacgtc 236 ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| || Sbjct: 92147 agggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtacatc 92206 Query: 237 gagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcgcac 296 ||||||| | || ||| |||||| |||| | ||| ||||||| |||||||||||| Sbjct: 92207 tcgtccggg-caga--agcagggcga---catgctgctgacggtgccagagggcgcgcac 92260 Query: 297 gccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggcgcc 356 |||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 92261 gccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggcatg 92320 Query: 357 tgctactccgtcaccttcaacgccgcgcgccacctgcggccagtc 401 | ||||||| |||| |||| ||||||||| |||||||| |||||| Sbjct: 92321 tactactccatcacattcagcgccgcgcg-cacctgcgcccagtc 92364 Score = 73.8 bits (37), Expect = 4e-10 Identities = 116/141 (82%), Gaps = 1/141 (0%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 109972 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 110031 Query: 326 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcg 385 || ||||| ||||| ||| || || || ||||||||||||||||| ||| ||||| Sbjct: 110032 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 110091 Query: 386 ccacctgcggccagtcggagc 406 |||||||| |||||| |||| Sbjct: 110092 -cacctgcgcccagtccgagc 110111 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||| ||||||||||||||||| ||||||||||||| |||| || ||| || | Sbjct: 116825 catgatcctggcggtgccggagggcgcgtacgccgtgcgcctgggcaacgacgcaaccat 116884 Query: 326 ccggcagcagctcagcctcacccg 349 |||||||| | ||||| ||||||| Sbjct: 116885 ccggcagcggatcagcgtcacccg 116908 Score = 69.9 bits (35), Expect = 6e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| ||||| ||| |||||||||||| | |||| ||| ||||||||||||||||||| Sbjct: 106113 ggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggcacg 106172 Query: 177 agggtgacggg 187 ||||||||||| Sbjct: 106173 agggtgacggg 106183 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 106256 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 106315 Query: 326 ccggcagc 333 || ||||| Sbjct: 106316 ccagcagc 106323 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcg 304 |||| ||||| |||||||||||||||||| ||||||||| Sbjct: 112177 catgatcctggcggtgccggagggcgcgcgcgccgtgcg 112215 Score = 46.1 bits (23), Expect = 0.088 Identities = 56/67 (83%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 109829 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 109888 Query: 177 agggtga 183 ||||||| Sbjct: 109889 agggtga 109895
>ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 114 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 173 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 82 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 141 Query: 174 acgagggtgacggg 187 |||||||||||||| Sbjct: 142 acgagggtgacggg 155 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 228 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 287 Query: 326 ccggcagc 333 || ||||| Sbjct: 288 ccagcagc 295
>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence Length = 1588 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 114 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 173 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 486 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 545 Query: 174 acgagggtgacggg 187 |||||||||||||| Sbjct: 546 acgagggtgacggg 559 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 632 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 691 Query: 326 ccggcagc 333 || ||||| Sbjct: 692 ccagcagc 699
>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full insert sequence Length = 1517 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 114 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 173 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 195 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 254 Query: 174 acgagggtgacggg 187 |||||||||||||| Sbjct: 255 acgagggtgacggg 268 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 341 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 400 Query: 326 ccggcagc 333 || ||||| Sbjct: 401 ccagcagc 408
>ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 234 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 293 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 294 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 352 Query: 398 agtcggagc 406 || |||||| Sbjct: 353 aggcggagc 361
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 73.8 bits (37), Expect = 4e-10 Identities = 116/141 (82%), Gaps = 1/141 (0%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 222 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 281 Query: 326 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcg 385 || ||||| ||||| ||| || || || ||||||||||||||||| ||| ||||| Sbjct: 282 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 341 Query: 386 ccacctgcggccagtcggagc 406 |||||||| |||||| |||| Sbjct: 342 -cacctgcgcccagtccgagc 361 Score = 46.1 bits (23), Expect = 0.088 Identities = 56/67 (83%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 79 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 138 Query: 177 agggtga 183 ||||||| Sbjct: 139 agggtga 145
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 24178753 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 24178812 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 24178813 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 24178871 Query: 398 agtcggagc 406 || |||||| Sbjct: 24178872 aggcggagc 24178880
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 154575 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 154634 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 154635 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 154693 Query: 398 agtcggagc 406 || |||||| Sbjct: 154694 aggcggagc 154702
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 3317 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 3376 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 3377 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 3435 Query: 398 agtcggagc 406 || |||||| Sbjct: 3436 aggcggagc 3444
>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full insert sequence Length = 1474 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 222 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 281 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 282 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 340 Query: 398 agtcggagc 406 || |||||| Sbjct: 341 aggcggagc 349
>dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full insert sequence Length = 3062 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 351 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 410 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 411 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 469 Query: 398 agtcggagc 406 || |||||| Sbjct: 470 aggcggagc 478
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 73.8 bits (37), Expect = 4e-10 Identities = 116/141 (82%), Gaps = 1/141 (0%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 325 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 343 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 402 Query: 326 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcg 385 || ||||| ||||| ||| || || || ||||||||||||||||| ||| ||||| Sbjct: 403 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 462 Query: 386 ccacctgcggccagtcggagc 406 |||||||| |||||| |||| Sbjct: 463 -cacctgcgcccagtccgagc 482 Score = 46.1 bits (23), Expect = 0.088 Identities = 56/67 (83%) Strand = Plus / Plus Query: 117 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 176 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 200 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 259 Query: 177 agggtga 183 ||||||| Sbjct: 260 agggtga 266
>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full insert sequence Length = 1690 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 351 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 410 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 411 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 469 Query: 398 agtcggagc 406 || |||||| Sbjct: 470 aggcggagc 478
>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full insert sequence Length = 1597 Score = 73.8 bits (37), Expect = 4e-10 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 278 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 337 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 347 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 406 Query: 338 cagcctcacccgcggcgcctgctactccgtcaccttcaacgccgcgcgccacctgcggcc 397 | | | ||| | ||||||| |||| ||||||| || | ||| ||||| |||||||| || Sbjct: 407 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcg-cacctgcgccc 465 Query: 398 agtcggagc 406 || |||||| Sbjct: 466 aggcggagc 474
>ref|XM_473020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 266 catggtcctgccggtgccggagggcgcgcacgccgtgcg 304 |||| ||||| |||||||||||||||||| ||||||||| Sbjct: 228 catgatcctggcggtgccggagggcgcgcgcgccgtgcg 266
>ref|XM_474601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1014 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 290 cgcgcacgccgtgcgcctcggc 311 |||||||||||||||||||||| Sbjct: 153 cgcgcacgccgtgcgcctcggc 174
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 290 cgcgcacgccgtgcgcctcggc 311 |||||||||||||||||||||| Sbjct: 3111 cgcgcacgccgtgcgcctcggc 3090
>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21, complete sequence Length = 127162 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 290 cgcgcacgccgtgcgcctcggc 311 |||||||||||||||||||||| Sbjct: 4661 cgcgcacgccgtgcgcctcggc 4682
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 gcgcgcgctgcgtcgccgcgct 70 |||||||||||||||||||||| Sbjct: 2830369 gcgcgcgctgcgtcgccgcgct 2830348
>dbj|AK108398.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F12, full insert sequence Length = 1181 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 290 cgcgcacgccgtgcgcctcggc 311 |||||||||||||||||||||| Sbjct: 197 cgcgcacgccgtgcgcctcggc 218
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 cggcgcctccgtccggcagcagct 337 ||||||| |||||||||||||||| Sbjct: 1818641 cggcgccgccgtccggcagcagct 1818618
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 gcgcgcgctgcgtcgccgcgctgc 72 |||||||||||| ||||||||||| Sbjct: 2483670 gcgcgcgctgcggcgccgcgctgc 2483647
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 acgccgcgcgccacctgcggccag 399 ||||||||| |||||||||||||| Sbjct: 615825 acgccgcgcaccacctgcggccag 615802
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 gcgcgcgctgcgtcgccgcgctgc 72 |||||||||||| ||||||||||| Sbjct: 3701944 gcgcgcgctgcggcgccgcgctgc 3701967
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tcgatcgccagaagcggaga 24 |||||||||||||||||||| Sbjct: 4107056 tcgatcgccagaagcggaga 4107037
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 cgccacctgcggccagtcgg 403 |||||||||||||||||||| Sbjct: 629435 cgccacctgcggccagtcgg 629416
>gb|BT009135.1| Triticum aestivum clone wl1n.pk0038.e3:fis, full insert mRNA sequence Length = 659 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 295 acgccgtgcgcctcggcagcggcgcctc 322 ||||||| ||||||||||||| |||||| Sbjct: 460 acgccgtccgcctcggcagcgtcgcctc 487
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gtgccggagggcgcgcacgc 298 |||||||||||||||||||| Sbjct: 107009 gtgccggagggcgcgcacgc 107028
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gtgccggagggcgcgcacgc 298 |||||||||||||||||||| Sbjct: 26246 gtgccggagggcgcgcacgc 26265
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gtgccggagggcgcgcacgc 298 |||||||||||||||||||| Sbjct: 13245 gtgccggagggcgcgcacgc 13264
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 gcgcgcgctgcgtcgccgcgctgc 72 |||||||||||| ||||||||||| Sbjct: 3442257 gcgcgcgctgcggcgccgcgctgc 3442280
>dbj|AB187026.1| Triticum aestivum CHI gene for chalcone isomerase, partial cds Length = 394 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cctactggaaggccaccggc 221 |||||||||||||||||||| Sbjct: 36 cctactggaaggccaccggc 55
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gggtgacgggcgcgcacgcc 197 |||||||||||||||||||| Sbjct: 2566383 gggtgacgggcgcgcacgcc 2566364
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 caccttcaacgccgcgcgcc 387 |||||||||||||||||||| Sbjct: 8260218 caccttcaacgccgcgcgcc 8260237
>gb|AY104432.1| Zea mays PCO120449 mRNA sequence Length = 2218 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 295 acgccgtgcgcctcggcagcggcgcctc 322 ||||||| ||||||||||||| |||||| Sbjct: 1898 acgccgtccgcctcggcagcgtcgcctc 1925
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 gcgcgcgctgcgtcgccgcgctgc 72 |||||||||||| ||||||||||| Sbjct: 1419171 gcgcgcgctgcggcgccgcgctgc 1419148 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,020,519 Number of Sequences: 3902068 Number of extensions: 2020519 Number of successful extensions: 52494 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50756 Number of HSP's gapped (non-prelim): 1738 length of query: 406 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 384 effective length of database: 17,147,199,772 effective search space: 6584524712448 effective search space used: 6584524712448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
