>UBP47_HUMAN (Q96K76) Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 47)
           (Ubiquitin-specific-processing protease 47)
           (Deubiquitinating enzyme 47)
          Length = 1375

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +1

Query: 313 SLKKLKAALEEARELVKS----QQQQGGFGDRVKEVATS 417
           SLK ++A LEE+ E +KS    QQQ G  GD  K   TS
Sbjct: 865 SLKSVEAILEESTEKLKSLSLQQQQDGDNGDSSKSTETS 903

>YE59_HELPJ (Q9ZJG0) Hypothetical RNA pseudouridine synthase jhp_1352 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 262

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  RHSRSSIMEAVLTGIIKVVREIAKAARTARENRKRCLD 201
           +HSR    + VL G +K+  E AK A   +EN K  LD
Sbjct: 17  KHSRREAEKLVLEGRVKINHEHAKLASVVKENDKVFLD 54

>Y1459_HELPY (P55986) Hypothetical RNA pseudouridine synthase HP1459 (EC|
           5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate
           synthase)
          Length = 262

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  RHSRSSIMEAVLTGIIKVVREIAKAARTARENRKRCLD 201
           +HSR    + VL G +K+  E AK A   +EN +  LD
Sbjct: 17  KHSRREAEKLVLEGRVKINHEHAKLASVVKENDRVFLD 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,508,919
Number of Sequences: 219361
Number of extensions: 642798
Number of successful extensions: 2300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2299
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)