ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ223629.1|DGAJ3629 Desulfovibrio gigas hynC, hynD genes 44 0.47
2gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 44 0.47
3dbj|AB189955.1| Rattus norvegicus GP9 gene for platelet glycopro... 44 0.47
4dbj|AB189954.1| Rattus norvegicus GP9 gene for platelet glycopro... 44 0.47
5gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
6gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
7gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.9
8ref|XM_687109.1| PREDICTED: Danio rerio similar to Matrin 3 (LOC... 42 1.9
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
10emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in ... 42 1.9
11dbj|AK072943.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
12dbj|AK067284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
13gb|AE010323.1| Methanopyrus kandleri AV19 section 22 of 157 of t... 40 7.3
14ref|XM_481817.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.3
15gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 7.3
16ref|XM_878227.1| PREDICTED: Bos taurus similar to F-box protein ... 40 7.3
17gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence 40 7.3
18gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.3
19ref|XM_676847.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.3
20gb|BC068397.1| Danio rerio wu:fc04c01, mRNA (cDNA clone IMAGE:69... 40 7.3
21gb|AF099924.2| Caenorhabditis elegans cosmid K07A9, complete seq... 40 7.3
22gb|BC056281.1| Danio rerio wu:fc04c01, mRNA (cDNA clone IMAGE:67... 40 7.3
23gb|AY224566.1| Oryza sativa (japonica cultivar-group) isolate 29... 40 7.3
24ref|XM_793381.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.3
25ref|XM_790629.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.3
26gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.3
27ref|XM_680456.1| PREDICTED: Danio rerio wu:fc04c01, transcript v... 40 7.3
28ref|NM_171278.2| Caenorhabditis elegans K07A9.4 (K07A9.4) mRNA, ... 40 7.3
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
31gb|AE009478.1| Brucella melitensis 16M chromosome I, section 35 ... 40 7.3
32dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.3
33dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.3
34gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 7.3
35dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.3
36gb|AE005050.1| Halobacterium sp. NRC-1 section 81 of 170 of the ... 40 7.3
37emb|BX294661.14| Zebrafish DNA sequence from clone CH211-199I18 ... 40 7.3
38dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
39dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
40emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 7.3
41dbj|AK066694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
42dbj|AP001086.7| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.3
43gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.3
44gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 7.3
45gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
46emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.3
47emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A... 40 7.3
48gb|AC131699.4| Mus musculus BAC clone RP23-440F17 from 1, comple... 40 7.3
49emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 40 7.3
50gb|AC167197.6| Mus musculus chromosome 1, clone RP23-62B14, comp... 40 7.3 
>emb|AJ223629.1|DGAJ3629 Desulfovibrio gigas hynC, hynD genes
          Length = 879

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 367 cagcagcagcagggaggctttg 388
           ||||||||||||||||||||||
Sbjct: 700 cagcagcagcagggaggctttg 679
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 203    tcgccgaccgcgcgcgcatcatcggc 228
              |||||||||||||||||| |||||||
Sbjct: 224009 tcgccgaccgcgcgcgcaccatcggc 223984
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>dbj|AB189955.1| Rattus norvegicus GP9 gene for platelet glycoprotein IX, partial cds,
            strain: LEC/Crj
          Length = 1159

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 26   aggtaaccagtcctcctcctttcagc 51
            |||||| |||||||||||||||||||
Sbjct: 1134 aggtaagcagtcctcctcctttcagc 1159
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>dbj|AB189954.1| Rattus norvegicus GP9 gene for platelet glycoprotein IX, partial cds,
            strain: F344/DuCrj
          Length = 1155

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 26   aggtaaccagtcctcctcctttcagc 51
            |||||| |||||||||||||||||||
Sbjct: 1130 aggtaagcagtcctcctcctttcagc 1155
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>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14,
              complete sequence
          Length = 185623

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    gcgaaggcggcgaggacggcc 174
              |||||||||||||||||||||
Sbjct: 110991 gcgaaggcggcgaggacggcc 111011
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>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
              complete sequence
          Length = 160142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    gcgaaggcggcgaggacggcc 174
              |||||||||||||||||||||
Sbjct: 150218 gcgaaggcggcgaggacggcc 150238
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 196     ctcgacctcgccgaccgcgcg 216
               |||||||||||||||||||||
Sbjct: 3324139 ctcgacctcgccgaccgcgcg 3324119
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>ref|XM_687109.1| PREDICTED: Danio rerio similar to Matrin 3 (LOC563749), mRNA
          Length = 3962

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 361  aagtctcagcagcagcagggaggct 385
            |||||||||||||||||||| ||||
Sbjct: 3757 aagtctcagcagcagcagggtggct 3781
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 154      gcgaaggcggcgaggacggcc 174
                |||||||||||||||||||||
Sbjct: 21557135 gcgaaggcggcgaggacggcc 21557155
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>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7, complete
              sequence
          Length = 199752

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 361    aagtctcagcagcagcagggaggct 385
              |||||||||||||||||||| ||||
Sbjct: 191677 aagtctcagcagcagcagggtggct 191701
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>dbj|AK072943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148N05, full
           insert sequence
          Length = 2634

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 154 gcgaaggcggcgaggacggcc 174
           |||||||||||||||||||||
Sbjct: 347 gcgaaggcggcgaggacggcc 327
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>dbj|AK067284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100P21, full
           insert sequence
          Length = 2768

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 154 gcgaaggcggcgaggacggcc 174
           |||||||||||||||||||||
Sbjct: 293 gcgaaggcggcgaggacggcc 273
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>gb|AE010323.1| Methanopyrus kandleri AV19 section 22 of 157 of the complete genome
          Length = 11978

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 393 cagggtcaaggaggtcgcca 412
           ||||||||||||||||||||
Sbjct: 912 cagggtcaaggaggtcgcca 893
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>ref|XM_481817.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cgaggaagcgcgcgagctcg 358
           ||||||||||||||||||||
Sbjct: 915 cgaggaagcgcgcgagctcg 934
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 106     atcatggaggcggtgctgaccggg 129
               ||||||||||||||||||| ||||
Sbjct: 1603111 atcatggaggcggtgctgagcggg 1603134
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>ref|XM_878227.1| PREDICTED: Bos taurus similar to F-box protein 38 isoform a,
           transcript variant 2 (LOC533554), mRNA
          Length = 2679

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 367 cagcagcagcagggaggctttggc 390
           ||||||||||||| ||||||||||
Sbjct: 74  cagcagcagcaggcaggctttggc 97
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>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    ggcggcgaggacggcccggg 178
              ||||||||||||||||||||
Sbjct: 179829 ggcggcgaggacggcccggg 179848
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     cgcgcgcgcatcatcggcga 230
               ||||||||||||||||||||
Sbjct: 2977527 cgcgcgcgcatcatcggcga 2977508
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>ref|XM_676847.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8670.2), mRNA
          Length = 2676

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 158  aggcggcgaggacggcccgggaga 181
            |||||||||||| |||||||||||
Sbjct: 1770 aggcggcgaggaaggcccgggaga 1747
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>gb|BC068397.1| Danio rerio wu:fc04c01, mRNA (cDNA clone IMAGE:6962027), partial
           cds
          Length = 2489

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 tctcagcagcagcagggagg 383
           ||||||||||||||||||||
Sbjct: 524 tctcagcagcagcagggagg 543
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>gb|AF099924.2| Caenorhabditis elegans cosmid K07A9, complete sequence
          Length = 33460

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 225   cggcgacatcctccaattcgactc 248
             ||||||||| ||||||||||||||
Sbjct: 22510 cggcgacatgctccaattcgactc 22533
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>gb|BC056281.1| Danio rerio wu:fc04c01, mRNA (cDNA clone IMAGE:6789697), partial
           cds
          Length = 2448

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 tctcagcagcagcagggagg 383
           ||||||||||||||||||||
Sbjct: 532 tctcagcagcagcagggagg 551
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>gb|AY224566.1| Oryza sativa (japonica cultivar-group) isolate 29941 putative
           myosin heavy chain mRNA, partial cds
          Length = 1365

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 320 agaagctcaaggccgcgctcgagg 343
           ||||||||||| ||||||||||||
Sbjct: 50  agaagctcaagcccgcgctcgagg 73
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>ref|XM_793381.1| PREDICTED: Strongylocentrotus purpuratus similar to CCR4-NOT
           transcription complex, subunit 1 isoform a (LOC593926),
           partial mRNA
          Length = 1229

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tcatcaaggtggtgagggag 150
           ||||||||||||||||||||
Sbjct: 503 tcatcaaggtggtgagggag 522
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>ref|XM_790629.1| PREDICTED: Strongylocentrotus purpuratus similar to CCR4-NOT
           transcription complex, subunit 1 isoform a (LOC591046),
           partial mRNA
          Length = 963

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 tcatcaaggtggtgagggag 150
           ||||||||||||||||||||
Sbjct: 401 tcatcaaggtggtgagggag 420
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     gcagcgccggcggctacacc 288
               ||||||||||||||||||||
Sbjct: 1938304 gcagcgccggcggctacacc 1938323
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>ref|XM_680456.1| PREDICTED: Danio rerio wu:fc04c01, transcript variant 1
           (wu:fc04c01), mRNA
          Length = 2444

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 364 tctcagcagcagcagggagg 383
           ||||||||||||||||||||
Sbjct: 554 tctcagcagcagcagggagg 573
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>ref|NM_171278.2| Caenorhabditis elegans K07A9.4 (K07A9.4) mRNA, complete cds
          Length = 654

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 225 cggcgacatcctccaattcgactc 248
           ||||||||| ||||||||||||||
Sbjct: 504 cggcgacatgctccaattcgactc 527
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 320      agaagctcaaggccgcgctcgagg 343
                ||||||||||| ||||||||||||
Sbjct: 27523460 agaagctcaagcccgcgctcgagg 27523483
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 339      cgaggaagcgcgcgagctcg 358
                ||||||||||||||||||||
Sbjct: 15711748 cgaggaagcgcgcgagctcg 15711767
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>gb|AE009478.1| Brucella melitensis 16M chromosome I, section 35 of 195 of the
            complete sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 314  cgctgaagaagctcaaggccgcgc 337
            |||||||||||||||| |||||||
Sbjct: 4072 cgctgaagaagctcaatgccgcgc 4095
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     acctcgccgaccgcgcgcgc 219
               ||||||||||||||||||||
Sbjct: 5155957 acctcgccgaccgcgcgcgc 5155938
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 320    agaagctcaaggccgcgctcgagg 343
              |||||||||| |||||||||||||
Sbjct: 624864 agaagctcaacgccgcgctcgagg 624887
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 314     cgctgaagaagctcaaggccgcgc 337
               |||||||||||||||| |||||||
Sbjct: 1635400 cgctgaagaagctcaatgccgcgc 1635377
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 194     gcctcgacctcgccgaccgcgcgc 217
               ||||||||||||||||||| ||||
Sbjct: 1558062 gcctcgacctcgccgaccgggcgc 1558039
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>gb|AE005050.1| Halobacterium sp. NRC-1 section 81 of 170 of the complete genome
          Length = 16905

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  gggcacgaccagcagcgccg 277
            ||||||||||||||||||||
Sbjct: 6478 gggcacgaccagcagcgccg 6497
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>emb|BX294661.14| Zebrafish DNA sequence from clone CH211-199I18 in linkage group 20,
             complete sequence
          Length = 197237

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   tctcagcagcagcagggagg 383
             ||||||||||||||||||||
Sbjct: 44815 tctcagcagcagcagggagg 44834
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>dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0404D10
          Length = 155069

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   cgaggaagcgcgcgagctcg 358
             ||||||||||||||||||||
Sbjct: 26204 cgaggaagcgcgcgagctcg 26223
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>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0410E11
          Length = 150200

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    cgaggaagcgcgcgagctcg 358
              ||||||||||||||||||||
Sbjct: 145903 cgaggaagcgcgcgagctcg 145922
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     cgaccgcgcgcgcatcatcg 226
               ||||||||||||||||||||
Sbjct: 2066088 cgaccgcgcgcgcatcatcg 2066107
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>dbj|AK066694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074D12, full
           insert sequence
          Length = 2319

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 320 agaagctcaaggccgcgctcgagg 343
           ||||||||||| ||||||||||||
Sbjct: 208 agaagctcaagcccgcgctcgagg 231
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>dbj|AP001086.7| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681N23, complete
              sequence
          Length = 185603

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    aagtctcagcagcagcaggg 380
              ||||||||||||||||||||
Sbjct: 169910 aagtctcagcagcagcaggg 169891
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 114     ggcggtgctgaccgggatca 133
               ||||||||||||||||||||
Sbjct: 3672299 ggcggtgctgaccgggatca 3672318



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 330     ggccgcgctcgaggaagcgc 349
               ||||||||||||||||||||
Sbjct: 1630380 ggccgcgctcgaggaagcgc 1630361
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     cacggcgggcacgaccagca 271
               ||||||||||||||||||||
Sbjct: 1433382 cacggcgggcacgaccagca 1433363
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 320      agaagctcaaggccgcgctcgagg 343
                ||||||||||| ||||||||||||
Sbjct: 27449018 agaagctcaagcccgcgctcgagg 27449041
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>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109222

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   agaagctcaaggccgcgctcgagg 343
             ||||||||||| ||||||||||||
Sbjct: 99374 agaagctcaagcccgcgctcgagg 99397
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>emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 78611

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 320   agaagctcaaggccgcgctcgagg 343
             ||||||||||| ||||||||||||
Sbjct: 43534 agaagctcaagcccgcgctcgagg 43511
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>gb|AC131699.4| Mus musculus BAC clone RP23-440F17 from 1, complete sequence
          Length = 200544

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    gcagcagcagggaggctttg 388
              ||||||||||||||||||||
Sbjct: 162364 gcagcagcagggaggctttg 162383
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 314     cgctgaagaagctcaaggccgcgc 337
               |||||||||||||||| |||||||
Sbjct: 1632569 cgctgaagaagctcaatgccgcgc 1632546
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>gb|AC167197.6| Mus musculus chromosome 1, clone RP23-62B14, complete sequence
          Length = 220763

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    gcagcagcagggaggctttg 388
              ||||||||||||||||||||
Sbjct: 144886 gcagcagcagggaggctttg 144905


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,832,880
Number of Sequences: 3902068
Number of extensions: 3832880
Number of successful extensions: 78625
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76737
Number of HSP's gapped (non-prelim): 1888
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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