ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart55d11 |
|---|---|
| Clone Library Name | barley_pub |
>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb| chitinase-1) (TBC-1) Length = 314 Score = 181 bits (459), Expect = 1e-45 Identities = 94/173 (54%), Positives = 120/173 (69%) Frame = +3 Query: 54 IAMTNGYLFREYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFS 233 + +T+ +FREYIG+QF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F Sbjct: 21 LPLTSALVFREYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYT---SGSSPTPTNGNFK 77 Query: 234 AFWDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSR 413 FWDT +LS + VAA+K H NV V + LGGDSV V F+P+SV SWV NAV+SL+R Sbjct: 78 PFWDTNNLSPSQVAAVKRTHSNVKVSLSLGGDSVGG-KNVFFSPSSVSSWVENAVSSLTR 136 Query: 414 LINEYGLDGVDVDYERFATGVSVDTFVECAGRLLTQLKARFPNITTSIAPFED 572 +I +Y LDG+D+DYE F +TF EC G+L+T+LK SIAPF+D Sbjct: 137 IIKQYHLDGIDIDYEHFKG--DPNTFAECIGQLVTRLKKNEVVSFVSIAPFDD 187
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 176 bits (446), Expect = 4e-44 Identities = 94/166 (56%), Positives = 117/166 (70%) Frame = +3 Query: 75 LFREYIGAQFTGVRFSDVPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSAFWDTAS 254 LFREYIGAQF V+FSDVP+N V FH+ILAFAIDYT +PTPTNG F+ FWDT + Sbjct: 2 LFREYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYT---SGSSPTPTNGNFNPFWDTNN 58 Query: 255 LSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGL 434 LS + VAAIK + NV V V LGG+SV +V F P+SV SWV NAV+SL+++I +Y L Sbjct: 59 LSPSQVAAIKRTYNNVKVSVSLGGNSVGG-ERVFFNPSSVSSWVDNAVSSLTKIIKQYHL 117 Query: 435 DGVDVDYERFATGVSVDTFVECAGRLLTQLKARFPNITTSIAPFED 572 DG+D+DYE F +TF EC G+L+T+LK SIAPF+D Sbjct: 118 DGIDIDYEHFKG--DPNTFAECIGQLVTRLKKNGVVSFVSIAPFDD 161
>RUAP_SOYBN (P39657) RuBisCO-associated protein| Length = 283 Score = 59.7 bits (143), Expect = 6e-09 Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 4/138 (2%) Frame = +3 Query: 126 VPVNTGVSFHYILAFAIDYTPVAQKPTPTPTNGAFSAFWDTASLSRADVAAIKAAHP--- 296 +P N F L+ A DY TNG F +WDT ++ + K + Sbjct: 22 IPENI-TEFQVTLSLARDYDG------NNSTNGKFIPYWDTEKVTPEVIKKFKKKYEPTA 74 Query: 297 -NVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDVDYERFATG 473 V V+V +G + Q + NS ++WV+ A ASL +I Y LDG+DV YE A Sbjct: 75 LRVKVLVSIGNKNKQFPFTIGSDSNS-EAWVSEATASLKSIIKTYNLDGIDVSYEDIAAN 133 Query: 474 VSVDTFVECAGRLLTQLK 527 + FV G L+ LK Sbjct: 134 EA--DFVNSVGGLVRNLK 149
>CHIB_SERMA (P11797) Chitinase B precursor (EC 3.2.1.14)| Length = 499 Score = 42.7 bits (99), Expect = 7e-04 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Frame = +3 Query: 219 NGAFSAFWDTAS--LSRADVA----AIKAAHPNVSVMVGLGGDSVQDIVKVSFAP--NSV 374 N WD A+ DV A+KA +P++ +M +GG + + VS A N+V Sbjct: 55 NSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAV 114 Query: 375 DSWVANA--VASLSRLINEYGLDGVDVDYERFATGVSVDTFVECAGRLLTQL 524 + A S R++ +YG DGVD+D+E + VD F+ + T L Sbjct: 115 KTPAARTKFAQSCVRIMKDYGFDGVDIDWE-YPQAAEVDGFIAALQEIRTLL 165
>CHIX_STROI (Q05638) Exochitinase 1 precursor (EC 3.2.1.14)| Length = 597 Score = 42.0 bits (97), Expect = 0.001 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 28/182 (15%) Frame = +3 Query: 24 LTPRPAPARSIAMTNGY------LFREYIGAQFTGVRFSDVPVNTGVSF-HYILAFAIDY 182 LTP A A +A NG A TG +D+P + V + H A Y Sbjct: 221 LTPDTAYAFQVAAVNGAGESAKSATVTATTAPGTGGGSADLPPHALVGYLHASFANGSGY 280 Query: 183 TPVAQKPTPTPTNGAFSAFWDTASLSRADV--------------------AAIKAAHP-N 299 T +A P AF + S++ D+ AAIKA Sbjct: 281 TRLADVPDSWDVIDL--AFGEPTSVTSGDIRFDRCPATECPNVESDAEFKAAIKAKQAAG 338 Query: 300 VSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDVDYERFATGVS 479 V++ +GG + Q + + A ++ V+S+S++I+EYGLDG+D+D+E + ++ Sbjct: 339 KKVLISIGGQNGQVQLTTTAARDTF-------VSSVSKIIDEYGLDGLDIDFEGHSLSLN 391 Query: 480 VD 485 D Sbjct: 392 AD 393
>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,| arginine/serine-rich 2-interacting protein) (SC35-interacting protein 1) (CTD-associated SR protein 11) (Splicing regulatory protein 129) (SRrp129) (NY-REN-40 antigen) Length = 1148 Score = 37.0 bits (84), Expect = 0.040 Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 16/125 (12%) Frame = +3 Query: 6 SGVPLI-----------LTPRPAPARSIAMTNGYLFREYIGAQFTGVRFSDVPVNTGVSF 152 +GVPL+ L P P P N YI +Q G + +P ++ VS Sbjct: 944 TGVPLMQVATPTSVSQGLPPPPPPPPPSQQVN------YIASQPDGKQLQGIPSSSHVSN 997 Query: 153 HYILAFAIDYTPVAQKPTPTPTN-----GAFSAFWDTASLSRADVAAIKAAHPNVSVMVG 317 + TPV PT P N G S ++S S+A AA+K A VSV V Sbjct: 998 NMS-------TPVLPAPTAAPGNTGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVE 1050 Query: 318 LGGDS 332 DS Sbjct: 1051 ASADS 1055
>CHIT_CAEEL (Q11174) Probable endochitinase (EC 3.2.1.14)| Length = 617 Score = 35.4 bits (80), Expect = 0.12 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 10/172 (5%) Frame = +3 Query: 45 ARSIAM---TNGYLFREYIG--AQFTGVRFSDVPVN--TGVSFHYILAFA---IDYTPVA 194 +RS+A TN Y+ Y AQ+ R VP + G+ H + AF DYT A Sbjct: 41 SRSVARSEPTNSYIRPCYFTNWAQYRQGRAKFVPEDYTPGLCTHILFAFGWMNADYTVRA 100 Query: 195 QKPTPTPTNGAFSAFWDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSV 374 P P + W + R V +K + ++ GG S + A +S Sbjct: 101 YDPADLPND------WAGEGMYRR-VNKLKVTDTQLKTLLSFGGWSFGTALFQGMAASSA 153 Query: 375 DSWVANAVASLSRLINEYGLDGVDVDYERFATGVSVDTFVECAGRLLTQLKA 530 V + S + +G DG+D+D+E + + +V L+ +LKA Sbjct: 154 SRKVF--IDSAITFVRTWGFDGIDIDWEYPSGATDMANYV----ALVKELKA 199
>CHIT3_DROME (Q9W5U2) Probable chitinase 3 (EC 3.2.1.14)| Length = 458 Score = 34.7 bits (78), Expect = 0.20 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 2/134 (1%) Frame = +3 Query: 63 TNGYLFREYIGAQFTGVRFSDVPVNTGVSFHYILAFAI-DYTPVAQKPTPTPTNGAFSAF 239 TN +R+ IG RF+ +NT + H I FA+ DY+ + + ++ Sbjct: 180 TNWAWYRKGIG------RFTPDDINTELCTHVIYGFAVLDYSELVLR--------THDSW 225 Query: 240 WDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQD-IVKVSFAPNSVDSWVANAVASLSRL 416 D + V ++K+ VS+ +G DS D ++ +P + +V +A+ Sbjct: 226 ADVENNFYTRVTSLKSKGIKVSLALGGWNDSQGDKYSRLVRSPMARSRFVRHAL----EF 281 Query: 417 INEYGLDGVDVDYE 458 I +YG +G+D+D+E Sbjct: 282 IEKYGFEGLDLDWE 295
>RS15_YEAST (Q01855) 40S ribosomal protein S15 (S21) (YS21) (RP52) (RIG| protein) Length = 142 Score = 32.7 bits (73), Expect = 0.76 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +3 Query: 33 RPAPARSIAMTNGYLFREYIGAQ---FTGVRFSDVPVNTGVSFHYILAFAIDYTPV 191 +PAP R+ M N + E IG+ + G F+ V + + HY+ F+I YTPV Sbjct: 72 KPAPVRT-HMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPV 126
>Y2598_MYCBO (P65010) Hypothetical protein Mb2598c| Length = 341 Score = 32.7 bits (73), Expect = 0.76 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = -2 Query: 376 STELGAKETLTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 212 S +LG L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 62 SDQLGG---LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>Y2568_MYCTU (P65009) Hypothetical protein Rv2568c/MT2644| Length = 341 Score = 32.7 bits (73), Expect = 0.76 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = -2 Query: 376 STELGAKETLTMSCTLSPPRPTMTLTFGCAALMAATSARDRLAVSQNALNAPLVG 212 S +LG L SC L+ RP+ T T G A A A+ RL + L P+VG Sbjct: 62 SDQLGG---LCSSCVLTIERPSDTNTAGLAEFARAEGAKRRLIAELHELKLPIVG 113
>EBAG_FLASP (P80036) Endo-beta-N-acetylglucosaminidase (EC 3.2.1.96)| (Mannosyl-glycoprotein endo-beta-N-acetyl-glucosaminidase) (DI-N-acetylchitobiosyl beta-N-acetylglucosaminidase) Length = 267 Score = 32.3 bits (72), Expect = 0.99 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +3 Query: 399 ASLSRLINEYGLDGVDVD--YERFATGVSVDTFVECAGRLLTQLKARFP 539 A +S +++YGLDGVD+D Y + T + + G L++ L+A P Sbjct: 109 AQVSATVSKYGLDGVDLDDEYSDYGTNGTPQPNQQSIGGLISALRADVP 157
>CH47_DROME (Q23997) Chitinase-like protein DS47 precursor| Length = 452 Score = 31.6 bits (70), Expect = 1.7 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Frame = +3 Query: 270 VAAIKAAHPNVSVMVGLGGDSVQDIVK-VSFAPNSVDSWVANA------VASLSRLINEY 428 V +K +PNV +++ +GGD ++ K PN + + V ++ L+ Y Sbjct: 96 VTRLKRKYPNVKILLSVGGDKDIELDKDAKELPNKYLELLESPTGRTRFVNTVYSLVKTY 155 Query: 429 GLDGVDVDYE 458 G DG+DV ++ Sbjct: 156 GFDGLDVAWQ 165
>EBA2_FLAME (P36912) Endo-beta-N-acetylglucosaminidase F2 precursor (EC| 3.2.1.96) (Mannosyl-glycoprotein endo-beta-N-acetyl-glucosaminidase F2) (Di-N-acetylchitobiosyl beta-N-acetylglucosaminidase F2) (Endoglycosidase F2) Length = 335 Score = 31.2 bits (69), Expect = 2.2 Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 7/113 (6%) Frame = +3 Query: 177 DYTPVAQKPTPTPTNGAFSAFWDTASLS-------RADVAAIKAAHPNVSVMVGLGGDSV 335 DYTP P N A+W+T + R I N + G G DS+ Sbjct: 98 DYTP--------PEN----AYWNTLKTNYVPYLHKRGTKVIITLGDLNSATTTG-GQDSI 144 Query: 336 QDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDVDYERFATGVSVDTFV 494 S+A D WV EY LDG+D+D E +G ++ FV Sbjct: 145 G---YSSWAKGIYDKWVG-----------EYNLDGIDIDIESSPSGATLTKFV 183
>CHIT2_DROME (Q9W092) Probable chitinase 2 precursor (EC 3.2.1.14)| Length = 484 Score = 30.8 bits (68), Expect = 2.9 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +3 Query: 270 VAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASLSRLINEYGLDGVDV 449 + +K +HP++ V + +GG + + N++ V +S I +Y DG+D+ Sbjct: 108 MTGLKRSHPHLKVSLAIGGWNEGSANYSTLVANNLLR--GRFVKQVSSFIRKYNFDGLDL 165 Query: 450 DYE 458 D+E Sbjct: 166 DWE 168
>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1| Length = 1906 Score = 29.6 bits (65), Expect = 6.4 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +3 Query: 186 PVAQKPTPTPTNGAFSAFWDTASLSRADVA 275 P P P PT AF F DT + S AD A Sbjct: 712 PTLGVPAPDPTTAAFDCFPDTTAASSADSA 741
>MTRC_METKA (O32865) Tetrahydromethanopterin S-methyltransferase subunit C (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit C) Length = 270 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +3 Query: 240 WDTASLSRADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWVANAVASL 407 W ++ R + P++ M GLGG SV I+ + + N+V +W A + ++ Sbjct: 63 WGADAVRRVAGYGLGTGVPSIGFM-GLGGGSVAAILAAALSGNTVPAWAAAIIGTV 117
>IDGF2_DROME (Q9V3D4) Chitinase-like protein Idgf2 precursor (Imaginal disk| growth factor protein 2) Length = 440 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 10/75 (13%) Frame = +3 Query: 264 ADVAAIKAAHPNVSVMVGLGGDSVQDIVKVSFAPNSVDSWV----------ANAVASLSR 413 ++V ++K +P++ V++ +GGD D P+ + ++ + S Sbjct: 85 SEVTSLKRKYPHLKVLLSVGGDHDID-------PDHPNKYIDLLEGEKVRQIGFIRSAYD 137 Query: 414 LINEYGLDGVDVDYE 458 L+ YG DG+D+ Y+ Sbjct: 138 LVKTYGFDGLDLAYQ 152
>CHIT1_HUMAN (Q13231) Chitotriosidase-1 precursor (EC 3.2.1.14) (Chitinase-1)| Length = 466 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +3 Query: 240 WDTASLSRADVAAIKAAHPNVSVMVGLGGDS--VQDIVKVSFAPNSVDSWVANAVASLSR 413 W+ +L + + +K +P + ++ +GG + Q + N+ ++V +A+ R Sbjct: 71 WNDETLYQ-EFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAI----R 125 Query: 414 LINEYGLDGVDVDYE 458 + +Y DG+D+D+E Sbjct: 126 FLRKYSFDGLDLDWE 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,608,679 Number of Sequences: 219361 Number of extensions: 1019587 Number of successful extensions: 4497 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4487 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
