ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart55d02 |
|---|---|
| Clone Library Name | barley_pub |
>RL25_CORGL (Q8NRV2) 50S ribosomal protein L25 (General stress protein CTC)| Length = 200 Score = 37.4 bits (85), Expect = 0.022 Identities = 30/128 (23%), Positives = 59/128 (46%) Frame = +1 Query: 97 HHTIQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLK 276 + TI+A R G +A R R G +PAV+ G V +T D + A +++ Sbjct: 4 YQTIEAAVRSEFGKGSARRARVAGQIPAVVY-------GADVESNLHVTIDHRTFAALVR 56 Query: 277 QSPYFLSTPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVN 456 Q ++ + L + ++ T + H + + T +I +L ++ G ++V+ Sbjct: 57 QEG--VNAVLELDIEGQKQLTMIKH--------IDQNVLTFHIDHLDLLAIKRGEKVEVD 106 Query: 457 LPVVFKGE 480 +PV+ +GE Sbjct: 107 VPVIVEGE 114
>RL25_RHOBA (Q7UKU9) 50S ribosomal protein L25 (General stress protein CTC)| Length = 212 Score = 37.4 bits (85), Expect = 0.022 Identities = 36/127 (28%), Positives = 55/127 (43%) Frame = +1 Query: 106 IQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLKQSP 285 IQ RE+ G A R RR+G+VPAVL G GE H L Q+ +L+ Sbjct: 12 IQVTKRESTGTAATRRLRRDGHVPAVLY-----GHGEANEH---LAVPSAQVKGLLRHH- 62 Query: 286 YFLSTPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNLPV 465 S V+L E T L +Q D +L++ ++ + +++ +P+ Sbjct: 63 ---SKTVQLSGDVDE---------TALVSDMQWDPLGIEVLHMDLIRVNLKEKVELGVPI 110 Query: 466 VFKGEDV 486 V GE V Sbjct: 111 VLHGEAV 117
>CAD26_HUMAN (Q8IXH8) Cadherin-like protein 26 precursor (Cadherin-like protein| VR20) Length = 847 Score = 35.4 bits (80), Expect = 0.085 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%) Frame = +1 Query: 67 PWRRAASASY---HHTIQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGV----- 222 P R S S H T+ E+ G A G PA+L+ A GP +GV Sbjct: 639 PKRHGCSVSNDEGHQTLVMYNAESKGTSAQTWSDVEGQRPALLICTAAAGPTQGVKAYPD 698 Query: 223 --AHRKLLTTDKKQLAEMLKQS 282 HR+LL + ++AE L QS Sbjct: 699 ATMHRQLLAPVEGRMAETLNQS 720
>RL25_WOLTR (Q5GTJ0) 50S ribosomal protein L25 (General stress protein CTC)| Length = 204 Score = 33.5 bits (75), Expect = 0.32 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 1/133 (0%) Frame = +1 Query: 103 TIQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKL-LTTDKKQLAEMLKQ 279 TI A R+ +A R+ GN+PAV+ G H + LT K+ + K Sbjct: 8 TINAELRDVTKTKAIRSLRKKGNIPAVVY---------GKGHNNVNLTLSAKEFTKQYKL 58 Query: 280 SPYFLSTPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNL 459 FLS V +G++ A+V +Q I ++ D+G+ +K+++ Sbjct: 59 G--FLSAHVIELDISGKKEYALVRD-------IQWHVVKDTIQHVDFQFVDKGSEIKIDI 109 Query: 460 PVVFKGEDVCPXL 498 P+ F E P + Sbjct: 110 PLSFVNESKSPGI 122
>RL25_RHIME (Q92N68) 50S ribosomal protein L25 (General stress protein CTC)| Length = 204 Score = 33.1 bits (74), Expect = 0.42 Identities = 33/133 (24%), Positives = 57/133 (42%) Frame = +1 Query: 100 HTIQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLKQ 279 + ++A R+ G ++ RRNG +PAV+ G + L T D M Sbjct: 5 YELKAETRDRVGKGSSRELRRNGLIPAVIY-----GDKQPPLSIALSTKD----VTMKIH 55 Query: 280 SPYFLSTPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNL 459 + F++T + V GE+ VLP Q D +++ + +G+ + V + Sbjct: 56 AGGFMTTVATIDVN-GEKIR-------VLPKDYQLDPVRDFTMHVDFLRVSKGSQVSVQV 107 Query: 460 PVVFKGEDVCPXL 498 PV F+ E+ P L Sbjct: 108 PVHFENEEKSPGL 120
>ADRB1_HUMAN (P08588) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 477 Score = 33.1 bits (74), Expect = 0.42 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 218 PSPGPGPARVSSTAGTLPLRRSRAAARGPA 129 P+P PGP R ++ A T PL RA R P+ Sbjct: 283 PAPPPGPPRPAAAAATAPLANGRAGKRRPS 312
>RL25_EHRRW (Q5HC84) 50S ribosomal protein L25 (General stress protein CTC)| Length = 208 Score = 32.7 bits (73), Expect = 0.55 Identities = 32/123 (26%), Positives = 50/123 (40%) Frame = +1 Query: 121 RETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLKQSPYFLST 300 R + G + RRNG +PAV+ HR L+ + K LST Sbjct: 14 RNSVGTGPSRTLRRNGAIPAVVYG----------KHRSPLSIYLSDREFLSKYRSAALST 63 Query: 301 PVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNLPVVFKGE 480 + +++ GE+ V L +Q T I ++ D GT +K+ +P+VF E Sbjct: 64 HL-IELEIGEKKEYV------LMRDIQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNE 116 Query: 481 DVC 489 C Sbjct: 117 QRC 119
>RL25_EHRRG (Q5FFA2) 50S ribosomal protein L25 (General stress protein CTC)| Length = 208 Score = 32.7 bits (73), Expect = 0.55 Identities = 32/123 (26%), Positives = 50/123 (40%) Frame = +1 Query: 121 RETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLKQSPYFLST 300 R + G + RRNG +PAV+ HR L+ + K LST Sbjct: 14 RNSVGTGPSRTLRRNGAIPAVVYG----------KHRSPLSIYLSDREFLSKYRSAALST 63 Query: 301 PVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNLPVVFKGE 480 + +++ GE+ V L +Q T I ++ D GT +K+ +P+VF E Sbjct: 64 HL-IELEIGEKKEYV------LMRDIQKHPVTDRIQHVDFQFIDHGTEIKIEVPLVFVNE 116 Query: 481 DVC 489 C Sbjct: 117 QRC 119
>SPON1_BOVIN (Q9GLX9) Spondin-1 precursor (F-spondin) (Vascular smooth muscle| cell growth-promoting factor) Length = 807 Score = 32.3 bits (72), Expect = 0.72 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = -3 Query: 401 FPVDSSVCTLMGSTVPECTTAVDRSPARTWRRTGVERK*GDCFSISASCFLSVVRSFRWA 222 FP D SVCTL +CT + SP+ + + + G+ SA+C + + + R Sbjct: 531 FPEDGSVCTLPTEETEKCTVNEECSPS-----SCLTTEWGEWDECSATCGMGMKKRHRMV 585 Query: 221 TPSPGPG 201 SP G Sbjct: 586 KMSPADG 592
>RL252_SYMTH (Q67M16) 50S ribosomal protein L25 2 (General stress protein CTC 2)| Length = 194 Score = 31.6 bits (70), Expect = 1.2 Identities = 32/126 (25%), Positives = 57/126 (45%) Frame = +1 Query: 106 IQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLKQSP 285 ++A PR T G RA+ R R+ G VP ++ GPG + +T ++L E +Q Sbjct: 3 LEATPRGT-GSRASRRLRQAGFVPGIIY-----GPGVEPLAVSVRSTQLERLVE--RQGR 54 Query: 286 YFLSTPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNLPV 465 L + +QV VV ++Q D T + ++ ++ D + + +P+ Sbjct: 55 GHL---IHVQVEGEANPRQVVIK------QLQRDILTQQVTHVDFLQVDMNRTITLTVPI 105 Query: 466 VFKGED 483 V GE+ Sbjct: 106 VVVGEE 111
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 31.6 bits (70), Expect = 1.2 Identities = 25/72 (34%), Positives = 28/72 (38%) Frame = +1 Query: 16 RGKGGAAAVGEALRKVAPWRRAASASYHHTIQAVPRETAGPRAAARERRNGNVPAVLLTL 195 +G GG AA RK AP + A + A PR A AAA PA Sbjct: 52 QGNGGKAAP----RKAAPAKPGAPSPAQAARPAAPRPPAPKPAAAERPAAAERPAAAPAA 107 Query: 196 AGPGPGEGVAHR 231 GP PG A R Sbjct: 108 PGPRPGPKPAPR 119
>RL25_BARQU (Q6G0F8) 50S ribosomal protein L25 (General stress protein CTC)| Length = 208 Score = 31.6 bits (70), Expect = 1.2 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 6/142 (4%) Frame = +1 Query: 91 SYHHTIQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEM 270 S +T++A RE G ++ RRNG +PAV+ P V+++++ Sbjct: 2 SKSYTLKAELRERVGKGSSRELRRNGFIPAVIYGDKQPPLAIAVSYKEIF---------- 51 Query: 271 LKQSPYFLSTPVRLQVRAGERSTAVVHSGT------VLPIKVQTDESTGNILNLVMVEAD 432 ++ AG T V VLP Q D +++ + Sbjct: 52 -------------YKIYAGGFRTTVATIAVGQQKIMVLPKDYQLDPVRDFPIHVDFLRVS 98 Query: 433 EGTMLKVNLPVVFKGEDVCPXL 498 ++++V++PV F ED P L Sbjct: 99 AQSVVEVSIPVHFFNEDTAPGL 120
>ENAM_MOUSE (O55196) Enamelin precursor| Length = 1274 Score = 27.7 bits (60), Expect(2) = 1.6 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -3 Query: 218 PSPGPGPARVSSTAGTLPLRRSRAAARGPAVSRGTAWIVWWYDAEAARRHG 66 P P R T GT R++ R P V RG W + ++ + A R G Sbjct: 325 PYPNYPSERQWQTTGTQGPRQNGPGYRNPQVERGPQWNSFAWEGKQATRPG 375 Score = 21.9 bits (45), Expect(2) = 1.6 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = -2 Query: 246 GGKELPVGDPFPGPGAG 196 G P+G+ PGP AG Sbjct: 268 GNDTSPIGNTGPGPNAG 284
>RL25_COXBU (Q83AP1) 50S ribosomal protein L25 (General stress protein CTC)| Length = 244 Score = 30.8 bits (68), Expect = 2.1 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Frame = +1 Query: 121 RETAGPRAAARERR-NGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLKQSPYFLS 297 RE G AA R RR VP + AG P + +T +K L + L+ F S Sbjct: 13 REFTGKSAARRMRRFEDKVPGTVYG-AGKAP-------QSITLLQKDLLKALESESTFSS 64 Query: 298 TPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNLPVVFKG 477 L ++ G++ V+ +Q + I+++ L +N+P+ F G Sbjct: 65 I---LTLKVGDKKQKVILKA------LQRHHTKPKIVHIDFQRIKASEKLIMNVPLHFLG 115 Query: 478 EDVCP 492 ED CP Sbjct: 116 EDDCP 120
>GBX1_MOUSE (P82976) Homeobox protein GBX-1 (Gastrulation and brain-specific| homeobox protein 1) Length = 418 Score = 30.8 bits (68), Expect = 2.1 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Frame = +1 Query: 55 RKVAPWRRAASASYHHTIQAVPRETAGPRA------AARERRNGNVPAVLLTLAGPGPG 213 R + P+ R ++A H + PR GPRA +AR R G A+ G PG Sbjct: 13 RPLPPYERESAAPEPHCAEPAPRRHLGPRARSEPCVSARGARRGPGSAMQRAAGGGAPG 71
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -3 Query: 485 TSSPLNTTGKFTFSIVPSSASTITKFNIFPVDSSVCTLMGSTVPECTTAVDRSPARTWRR 306 T++P +TT + VP++AST T ++ T +T TTA + A T Sbjct: 159 TTTPTSTTTTTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATTTAATTTAATTTAA 218 Query: 305 T 303 T Sbjct: 219 T 219
>SPON1_HUMAN (Q9HCB6) Spondin-1 precursor (F-spondin) (Vascular smooth muscle| cell growth-promoting factor) Length = 807 Score = 30.4 bits (67), Expect = 2.7 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = -3 Query: 401 FPVDSSVCTLMGSTVPECTTAVDRSPARTWRRTGVERK*GDCFSISASCFLSVVRSFRWA 222 FP D SVCTL +CT + SP+ + + + G+ SA+C + + + R Sbjct: 531 FPEDGSVCTLPTEETEKCTVNEECSPS-----SCLMTEWGEWDECSATCGMGMKKRHRMI 585 Query: 221 TPSPGPG 201 +P G Sbjct: 586 KMNPADG 592
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -3 Query: 485 TSSPLNTTGKFTFSIVPSSASTITKFNIFPVDSSVCTLMGSTVPECTTAVDRSPARTWRR 306 T++P +TT + VP++AST T ++ T +T TTA + A T Sbjct: 159 TTTPTSTTTTTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATTTAATTTAATTTAA 218 Query: 305 T 303 T Sbjct: 219 T 219
>HEMH_MOUSE (P22315) Ferrochelatase, mitochondrial precursor (EC 4.99.1.1)| (Protoheme ferro-lyase) (Heme synthetase) Length = 420 Score = 30.0 bits (66), Expect = 3.6 Identities = 37/147 (25%), Positives = 53/147 (36%), Gaps = 8/147 (5%) Frame = +1 Query: 1 MAQCLRGKGGAAA---VGEALRKVAPWRRAASASYHHTIQAVPRETAGPRAAARERRNGN 171 MA LR G V + R PWR + A+ T + V A ERR Sbjct: 8 MAAALRAAGALLREPLVHGSSRACQPWRCQSGAAVAATTEKVHHAKTTKPQAQPERRKPK 67 Query: 172 VPAVLLTLAGP---GPGEGVAHRKLLTTDKKQLAEMLKQSPYFLS--TPVRLQVRAGERS 336 ++L + GP G + R L D L K +P+ TP + R G S Sbjct: 68 TGILMLNMGGPETLGEVQDFLQRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQERRIGGGS 127 Query: 337 TAVVHSGTVLPIKVQTDESTGNILNLV 417 PIK+ T + ++ L+ Sbjct: 128 ----------PIKMWTSKQGEGMVKLL 144
>ARRC_HUMAN (P36575) Arrestin-C (Cone arrestin) (Retinal cone arrestin-3)| (X-arrestin) (C-arrestin) Length = 388 Score = 30.0 bits (66), Expect = 3.6 Identities = 18/71 (25%), Positives = 30/71 (42%) Frame = +1 Query: 196 AGPGPGEGVAHRKLLTTDKKQLAEMLKQSPYFLSTPVRLQVRAGERSTAVVHSGTVLPIK 375 AGPGP R LL+ QL + + ++ P+ + V + V+ IK Sbjct: 175 AGPGPSAQTIRRFLLSAQPLQLQAWMDREVHYHGEPISVNVSINNCTNKVIKK-----IK 229 Query: 376 VQTDESTGNIL 408 + D+ T +L Sbjct: 230 ISVDQITDVVL 240
>RS11_LEGPL (Q5WZI9) 30S ribosomal protein S11| Length = 132 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +1 Query: 70 WRRAASASYHHTIQAVP--RETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLT 243 W + + + + ++ P + A RAAA + G + +V + + GPGPG R+L+T Sbjct: 47 WATSGGSGFRGSRKSTPYAAQVATERAAAVAKEYG-MKSVAVFVHGPGPGRESTIRELIT 105 Query: 244 TDKK 255 D K Sbjct: 106 QDFK 109
>RS11_LEGPH (Q5ZYM0) 30S ribosomal protein S11| Length = 132 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +1 Query: 70 WRRAASASYHHTIQAVP--RETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLT 243 W + + + + ++ P + A RAAA + G + +V + + GPGPG R+L+T Sbjct: 47 WATSGGSGFRGSRKSTPYAAQVATERAAAVAKEYG-MKSVAVFVHGPGPGRESTIRELIT 105 Query: 244 TDKK 255 D K Sbjct: 106 QDFK 109
>RS11_LEGPA (Q5X836) 30S ribosomal protein S11| Length = 132 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Frame = +1 Query: 70 WRRAASASYHHTIQAVP--RETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLT 243 W + + + + ++ P + A RAAA + G + +V + + GPGPG R+L+T Sbjct: 47 WATSGGSGFRGSRKSTPYAAQVATERAAAVAKEYG-MKSVAVFVHGPGPGRESTIRELIT 105 Query: 244 TDKK 255 D K Sbjct: 106 QDFK 109
>UVRA_MICLU (P13567) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 992 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 319 RAGERSTAVVHSGTVLPIKVQTDESTGNILN 411 RAGE VVHSG++ +K T TG+ L+ Sbjct: 615 RAGEYGGEVVHSGSLADLKANTRSVTGDYLS 645
>SPON1_RAT (P35446) Spondin-1 precursor (F-spondin)| Length = 807 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = -3 Query: 401 FPVDSSVCTLMGSTVPECTTAVDRSPARTWRRTGVERK*GDCFSISASCFLSVVRSFRWA 222 FP D SVC L +CT + SP+ + + + G+ SA+C + + + R Sbjct: 531 FPEDGSVCMLPTEETEKCTVNEECSPS-----SCLVTEWGEWDDCSATCGMGMKKRHRMV 585 Query: 221 TPSPGPG 201 SP G Sbjct: 586 KMSPADG 592
>SPON1_MOUSE (Q8VCC9) Spondin-1 precursor (F-spondin)| Length = 807 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = -3 Query: 401 FPVDSSVCTLMGSTVPECTTAVDRSPARTWRRTGVERK*GDCFSISASCFLSVVRSFRWA 222 FP D SVC L +CT + SP+ + + + G+ SA+C + + + R Sbjct: 531 FPEDGSVCMLPTEETEKCTVNEECSPS-----SCLVTEWGEWDDCSATCGMGMKKRHRMV 585 Query: 221 TPSPGPG 201 SP G Sbjct: 586 KMSPADG 592
>YMO1_RHIME (P49305) Hypothetical 36.4 kDa protein in mocC-mocA intergenic| region (ORF334) Length = 334 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +1 Query: 328 ERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEG 438 ER +A + SG+ LPI+++ T +LN + A+ G Sbjct: 293 ERFSAAIRSGSPLPIELEWSLGTMKVLNAIQRSAERG 329
>MADCA_MOUSE (Q61826) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (mMAdCAM-1) Length = 405 Score = 29.6 bits (65), Expect = 4.7 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = -3 Query: 446 SIVPSSASTITKFNIFPVDSSVCTLMGSTVP-ECTTAVDRSPART-WRRTGVERK*GDCF 273 ++VP S F + P +S V MG+++ C+ + D AR WR G++ G Sbjct: 12 ALVPYQLSRGQSFQVNPPESEVAVAMGTSLQITCSMSCDEGVARVHWR--GLDTSLGSVQ 69 Query: 272 SISASCFLSV 243 ++ S LSV Sbjct: 70 TLPGSSILSV 79
>Y2573_YERPE (Q8ZDJ2) Hypothetical UPF0192 protein YPO2573/y1143/YP1141 precursor| Length = 2004 Score = 29.3 bits (64), Expect = 6.1 Identities = 20/54 (37%), Positives = 27/54 (50%) Frame = +1 Query: 283 PYFLSTPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTM 444 P+ +ST R Q S +V+ G VLPIKV TD +V+ DEG + Sbjct: 1190 PFKISTKAR-QAAIELASPSVIKPGEVLPIKVTTDSPQ----RVVVFAVDEGIL 1238
>KCNQ4_HUMAN (P56696) Potassium voltage-gated channel subfamily KQT member 4| (Voltage-gated potassium channel subunit Kv7.4) (Potassium channel alpha subunit KvLQT4) (KQT-like 4) Length = 695 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = -2 Query: 243 GKELPVGDPFPGPGAGEG 190 G LP G P PGPG+G G Sbjct: 49 GSPLPPGAPLPGPGSGSG 66
>EXON_HHV11 (P04294) Alkaline exonuclease (EC 3.1.11.-)| Length = 626 Score = 29.3 bits (64), Expect = 6.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -3 Query: 227 WATPSPGPGPARVSSTAGTLPLRRS 153 WA+ SPGPGPA +T+ + RS Sbjct: 600 WASRSPGPGPAAAETTSSSPTTGRS 624
>INSL3_RAT (Q9WUK0) Insulin-like 3 precursor (Leydig insulin-like peptide)| (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like 3 B chain; Insulin-like 3 A chain] Length = 128 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +1 Query: 37 AVGEALRKVAPWRRAASASYHHTIQAVPRETAGPR 141 A+G ALR P A HH ++A+ R GPR Sbjct: 11 ALGSALRSPQPPEARAKLCGHHLVRALVRVCGGPR 45
>RL25_IDILO (Q5QV04) 50S ribosomal protein L25 (General stress protein CTC)| Length = 221 Score = 28.9 bits (63), Expect = 7.9 Identities = 35/131 (26%), Positives = 53/131 (40%) Frame = +1 Query: 88 ASYHHTIQAVPRETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAE 267 A IQA R G A+ R R VPA+L G GE +A L D ++ Sbjct: 2 AELDFNIQATVRTDKGKGASRRLRHEDKVPAILY----GGQGEPIA----LALDHNKVNN 53 Query: 268 MLKQSPYFLSTPVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTML 447 M ++ S V L+ G++ A++ P K + + +L ++G L Sbjct: 54 MADYEAFY-SHIVTLEF-DGKKHQAILKDMQRHPYKPK-------LTHLDFQRVEKGHKL 104 Query: 448 KVNLPVVFKGE 480 NLP+ F E Sbjct: 105 HTNLPLHFLNE 115
>RL25_DESPS (Q6AJL8) 50S ribosomal protein L25 (General stress protein CTC)| Length = 183 Score = 28.9 bits (63), Expect = 7.9 Identities = 30/119 (25%), Positives = 50/119 (42%) Frame = +1 Query: 121 RETAGPRAAARERRNGNVPAVLLTLAGPGPGEGVAHRKLLTTDKKQLAEMLKQSPYFLST 300 RE G R R+ G PAV+ G G A L K + ++L+ S ++T Sbjct: 11 REAFGKGPMRRLRQQGITPAVVY-------GAGKAALPLQMDAKILMTQLLEFSR--VNT 61 Query: 301 PVRLQVRAGERSTAVVHSGTVLPIKVQTDESTGNILNLVMVEADEGTMLKVNLPVVFKG 477 V L V + V+ ++Q+D T ++++ E D + +PV F+G Sbjct: 62 VVSLSVDGQDAKNVVI-------AEIQSDPVTDALVHVDFCEIDLDQAREFTVPVTFEG 113
>SMAD6_MOUSE (O35182) Mothers against decapentaplegic homolog 6 (SMAD 6)| (Mothers against DPP homolog 6) (Smad6) (Mad homolog 7) Length = 495 Score = 28.9 bits (63), Expect = 7.9 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 12/77 (15%) Frame = +1 Query: 19 GKGGAAAVGE-----ALRKVAPWRRAASASYHHTIQAV----PRETAGPRAAA---RERR 162 G GG V E + + AP R +++V PR+ GPR AA R RR Sbjct: 25 GSGGGGGVDEDGSLGSRAEPAPRAREGGGCSRSEVRSVAPRRPRDAVGPRGAAIAGRRRR 84 Query: 163 NGNVPAVLLTLAGPGPG 213 G +P ++ +G G G Sbjct: 85 TGGLPRP-VSESGAGAG 100
>GRP2_PHAVU (P10496) Glycine-rich cell wall structural protein 1.8 precursor| (GRP 1.8) Length = 465 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/60 (35%), Positives = 24/60 (40%) Frame = -2 Query: 369 GEHGARVHDGGGSLAGADLEADRGGEEVGRXXXXXXXXXLVGGKELPVGDPFPGPGAGEG 190 GEHG GGGS AG + GG + G GG GD G G G+G Sbjct: 135 GEHGIGYGGGGGSGAGGGGGYNAGGAQGGGYGTGGGAGGGGGGG----GDHGGGYGGGQG 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,354,919 Number of Sequences: 219361 Number of extensions: 1004125 Number of successful extensions: 4860 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4484 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4832 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
